data_3EHI # _model_server_result.job_id R1y6P6cfwERq1pzdpe2qpQ _model_server_result.datetime_utc '2024-11-30 02:56:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ehi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":318}' # _entry.id 3EHI # _exptl.entry_id 3EHI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3EHI _cell.length_a 96.053 _cell.length_b 96.053 _cell.length_c 80.064 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EHI _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1,2 A,B,C,D,E 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 26.688 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MET 179 X MET 179 1_555 A N CME 180 X CME 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale2 A C CME 180 X CME 180 1_555 A N ALA 181 X ALA 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.29 ? covale ? covale3 A C LEU 198 X LEU 198 1_555 A N CME 199 X CME 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C CME 199 X CME 199 1_555 A N GLN 200 X GLN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 104 n n C1 C2 EDO sing 105 n n C1 H11 EDO sing 106 n n C1 H12 EDO sing 107 n n O1 HO1 EDO sing 108 n n C2 O2 EDO sing 109 n n C2 H21 EDO sing 110 n n C2 H22 EDO sing 111 n n O2 HO2 EDO sing 112 n n # _atom_sites.entry_id 3EHI _atom_sites.fract_transf_matrix[1][1] 0.010411 _atom_sites.fract_transf_matrix[1][2] 0.006011 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012021 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01249 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 X 1 316 316 SO4 SO4 . C 2 SO4 X 1 317 317 SO4 SO4 . D 3 EDO X 1 318 318 EDO EDO . E 4 HOH X 1 314 2 HOH HOH . E 4 HOH X 2 315 3 HOH HOH . E 4 HOH X 3 319 4 HOH HOH . E 4 HOH X 4 320 5 HOH HOH . E 4 HOH X 5 321 6 HOH HOH . E 4 HOH X 6 322 7 HOH HOH . E 4 HOH X 7 323 8 HOH HOH . E 4 HOH X 8 324 9 HOH HOH . E 4 HOH X 9 325 11 HOH HOH . E 4 HOH X 10 326 12 HOH HOH . E 4 HOH X 11 327 13 HOH HOH . E 4 HOH X 12 328 14 HOH HOH . E 4 HOH X 13 329 16 HOH HOH . E 4 HOH X 14 330 17 HOH HOH . E 4 HOH X 15 331 18 HOH HOH . E 4 HOH X 16 332 19 HOH HOH . E 4 HOH X 17 333 20 HOH HOH . E 4 HOH X 18 334 22 HOH HOH . E 4 HOH X 19 335 23 HOH HOH . E 4 HOH X 20 336 24 HOH HOH . E 4 HOH X 21 337 25 HOH HOH . E 4 HOH X 22 338 26 HOH HOH . E 4 HOH X 23 339 27 HOH HOH . E 4 HOH X 24 340 28 HOH HOH . E 4 HOH X 25 341 30 HOH HOH . E 4 HOH X 26 342 31 HOH HOH . E 4 HOH X 27 343 32 HOH HOH . E 4 HOH X 28 344 33 HOH HOH . E 4 HOH X 29 345 34 HOH HOH . E 4 HOH X 30 346 36 HOH HOH . E 4 HOH X 31 347 37 HOH HOH . E 4 HOH X 32 348 38 HOH HOH . E 4 HOH X 33 349 39 HOH HOH . E 4 HOH X 34 350 40 HOH HOH . E 4 HOH X 35 351 41 HOH HOH . E 4 HOH X 36 352 42 HOH HOH . E 4 HOH X 37 353 43 HOH HOH . E 4 HOH X 38 354 44 HOH HOH . E 4 HOH X 39 355 46 HOH HOH . E 4 HOH X 40 356 47 HOH HOH . E 4 HOH X 41 357 48 HOH HOH . E 4 HOH X 42 358 50 HOH HOH . E 4 HOH X 43 359 51 HOH HOH . E 4 HOH X 44 360 52 HOH HOH . E 4 HOH X 45 361 53 HOH HOH . E 4 HOH X 46 362 55 HOH HOH . E 4 HOH X 47 363 56 HOH HOH . E 4 HOH X 48 364 57 HOH HOH . E 4 HOH X 49 365 58 HOH HOH . E 4 HOH X 50 366 59 HOH HOH . E 4 HOH X 51 367 60 HOH HOH . E 4 HOH X 52 368 61 HOH HOH . E 4 HOH X 53 369 62 HOH HOH . E 4 HOH X 54 370 63 HOH HOH . E 4 HOH X 55 371 64 HOH HOH . E 4 HOH X 56 372 65 HOH HOH . E 4 HOH X 57 373 67 HOH HOH . E 4 HOH X 58 374 68 HOH HOH . E 4 HOH X 59 375 69 HOH HOH . E 4 HOH X 60 376 71 HOH HOH . E 4 HOH X 61 377 72 HOH HOH . E 4 HOH X 62 378 74 HOH HOH . E 4 HOH X 63 379 75 HOH HOH . E 4 HOH X 64 380 76 HOH HOH . E 4 HOH X 65 381 77 HOH HOH . E 4 HOH X 66 382 78 HOH HOH . E 4 HOH X 67 383 79 HOH HOH . E 4 HOH X 68 384 81 HOH HOH . E 4 HOH X 69 385 82 HOH HOH . E 4 HOH X 70 386 83 HOH HOH . E 4 HOH X 71 387 84 HOH HOH . E 4 HOH X 72 388 85 HOH HOH . E 4 HOH X 73 389 86 HOH HOH . E 4 HOH X 74 390 89 HOH HOH . E 4 HOH X 75 391 92 HOH HOH . E 4 HOH X 76 392 94 HOH HOH . E 4 HOH X 77 393 95 HOH HOH . E 4 HOH X 78 394 96 HOH HOH . E 4 HOH X 79 395 97 HOH HOH . E 4 HOH X 80 396 98 HOH HOH . E 4 HOH X 81 397 100 HOH HOH . E 4 HOH X 82 398 101 HOH HOH . E 4 HOH X 83 399 103 HOH HOH . E 4 HOH X 84 400 105 HOH HOH . E 4 HOH X 85 401 106 HOH HOH . E 4 HOH X 86 402 108 HOH HOH . E 4 HOH X 87 403 109 HOH HOH . E 4 HOH X 88 404 111 HOH HOH . E 4 HOH X 89 405 113 HOH HOH . E 4 HOH X 90 406 114 HOH HOH . E 4 HOH X 91 407 116 HOH HOH . E 4 HOH X 92 408 117 HOH HOH . E 4 HOH X 93 409 118 HOH HOH . E 4 HOH X 94 410 119 HOH HOH . E 4 HOH X 95 411 120 HOH HOH . E 4 HOH X 96 412 121 HOH HOH . E 4 HOH X 97 413 122 HOH HOH . E 4 HOH X 98 414 125 HOH HOH . E 4 HOH X 99 415 128 HOH HOH . E 4 HOH X 100 416 129 HOH HOH . E 4 HOH X 101 417 130 HOH HOH . E 4 HOH X 102 418 133 HOH HOH . E 4 HOH X 103 419 134 HOH HOH . E 4 HOH X 104 420 136 HOH HOH . E 4 HOH X 105 421 138 HOH HOH . E 4 HOH X 106 422 139 HOH HOH . E 4 HOH X 107 423 140 HOH HOH . E 4 HOH X 108 424 141 HOH HOH . E 4 HOH X 109 425 142 HOH HOH . E 4 HOH X 110 426 143 HOH HOH . E 4 HOH X 111 427 144 HOH HOH . E 4 HOH X 112 428 145 HOH HOH . E 4 HOH X 113 429 148 HOH HOH . E 4 HOH X 114 430 149 HOH HOH . E 4 HOH X 115 431 151 HOH HOH . E 4 HOH X 116 432 152 HOH HOH . E 4 HOH X 117 433 155 HOH HOH . E 4 HOH X 118 434 156 HOH HOH . E 4 HOH X 119 435 157 HOH HOH . E 4 HOH X 120 436 159 HOH HOH . E 4 HOH X 121 437 160 HOH HOH . E 4 HOH X 122 438 161 HOH HOH . E 4 HOH X 123 439 162 HOH HOH . E 4 HOH X 124 440 163 HOH HOH . E 4 HOH X 125 441 164 HOH HOH . E 4 HOH X 126 442 165 HOH HOH . E 4 HOH X 127 443 168 HOH HOH . E 4 HOH X 128 444 169 HOH HOH . E 4 HOH X 129 445 170 HOH HOH . E 4 HOH X 130 446 171 HOH HOH . E 4 HOH X 131 447 176 HOH HOH . E 4 HOH X 132 448 177 HOH HOH . E 4 HOH X 133 449 178 HOH HOH . E 4 HOH X 134 450 180 HOH HOH . E 4 HOH X 135 451 181 HOH HOH . E 4 HOH X 136 452 182 HOH HOH . E 4 HOH X 137 453 183 HOH HOH . E 4 HOH X 138 454 184 HOH HOH . E 4 HOH X 139 455 185 HOH HOH . E 4 HOH X 140 456 186 HOH HOH . E 4 HOH X 141 457 187 HOH HOH . E 4 HOH X 142 458 191 HOH HOH . E 4 HOH X 143 459 192 HOH HOH . E 4 HOH X 144 460 193 HOH HOH . E 4 HOH X 145 461 195 HOH HOH . E 4 HOH X 146 462 197 HOH HOH . E 4 HOH X 147 463 198 HOH HOH . E 4 HOH X 148 464 199 HOH HOH . E 4 HOH X 149 465 200 HOH HOH . E 4 HOH X 150 466 201 HOH HOH . E 4 HOH X 151 467 202 HOH HOH . E 4 HOH X 152 468 203 HOH HOH . E 4 HOH X 153 469 204 HOH HOH . E 4 HOH X 154 470 205 HOH HOH . E 4 HOH X 155 471 207 HOH HOH . E 4 HOH X 156 472 209 HOH HOH . E 4 HOH X 157 473 210 HOH HOH . E 4 HOH X 158 474 211 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 3 25.697 -30.443 9.582 1 58.57 ? C1 EDO 318 X 1 HETATM 2 O O1 EDO . . . D 3 24.449 -30.101 10.22 1 48.48 ? O1 EDO 318 X 1 HETATM 3 C C2 EDO . . . D 3 26.305 -29.265 8.775 1 56.64 ? C2 EDO 318 X 1 HETATM 4 O O2 EDO . . . D 3 25.892 -29.335 7.389 1 52.99 ? O2 EDO 318 X 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 359 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #