data_3EIG # _model_server_result.job_id GePTDZzIJirZI2Hy5VTo9w _model_server_result.datetime_utc '2024-11-21 22:43:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3eig # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":200}' # _entry.id 3EIG # _exptl.entry_id 3EIG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 454.439 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description METHOTREXATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3EIG _cell.length_a 42.348 _cell.length_b 47.868 _cell.length_c 90.715 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EIG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 183 A GLU 183 1_555 K CD CD . A CD 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc2 A OE2 GLU 183 A GLU 183 1_555 K CD CD . A CD 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc3 E O4 SO4 . A SO4 203 1_555 K CD CD . A CD 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? # _chem_comp.formula 'C20 H22 N8 O5' _chem_comp.formula_weight 454.439 _chem_comp.id MTX _chem_comp.mon_nstd_flag . _chem_comp.name METHOTREXATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 MTX doub 237 n y N1 C8A MTX sing 238 n y C2 NA2 MTX sing 239 n n C2 N3 MTX sing 240 n y NA2 HN21 MTX sing 241 n n NA2 HN22 MTX sing 242 n n N3 C4 MTX doub 243 n y C4 NA4 MTX sing 244 n n C4 C4A MTX sing 245 n y NA4 HN41 MTX sing 246 n n NA4 HN42 MTX sing 247 n n C4A N5 MTX sing 248 n y C4A C8A MTX doub 249 n y N5 C6 MTX doub 250 n y C6 C7 MTX sing 251 n y C6 C9 MTX sing 252 n n C7 N8 MTX doub 253 n y C7 H7 MTX sing 254 n n N8 C8A MTX sing 255 n y C9 N10 MTX sing 256 n n C9 H91 MTX sing 257 n n C9 H92 MTX sing 258 n n N10 CM MTX sing 259 n n N10 C14 MTX sing 260 n n CM HM1 MTX sing 261 n n CM HM2 MTX sing 262 n n CM HM3 MTX sing 263 n n C11 C12 MTX doub 264 n y C11 C16 MTX sing 265 n y C11 C MTX sing 266 n n C12 C13 MTX sing 267 n y C12 H12 MTX sing 268 n n C13 C14 MTX doub 269 n y C13 H13 MTX sing 270 n n C14 C15 MTX sing 271 n y C15 C16 MTX doub 272 n y C15 H15 MTX sing 273 n n C16 H16 MTX sing 274 n n C O MTX doub 275 n n C N MTX sing 276 n n N CA MTX sing 277 n n N HN MTX sing 278 n n CA CT MTX sing 279 n n CA CB MTX sing 280 n n CA HA MTX sing 281 n n CT O1 MTX doub 282 n n CT O2 MTX sing 283 n n O2 HO2 MTX sing 284 n n CB CG MTX sing 285 n n CB HB1 MTX sing 286 n n CB HB2 MTX sing 287 n n CG CD MTX sing 288 n n CG HG1 MTX sing 289 n n CG HG2 MTX sing 290 n n CD OE1 MTX doub 291 n n CD OE2 MTX sing 292 n n OE2 HOE2 MTX sing 293 n n # _atom_sites.entry_id 3EIG _atom_sites.fract_transf_matrix[1][1] 0.023614 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020891 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011024 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MTX A 1 200 200 MTX MTX . C 3 SO4 A 1 201 1 SO4 SO4 . D 3 SO4 A 1 202 2 SO4 SO4 . E 3 SO4 A 1 203 3 SO4 SO4 . F 3 SO4 A 1 204 4 SO4 SO4 . G 3 SO4 A 1 205 5 SO4 SO4 . H 3 SO4 A 1 206 6 SO4 SO4 . I 3 SO4 A 1 207 7 SO4 SO4 . J 3 SO4 A 1 208 8 SO4 SO4 . K 4 CD A 1 209 1 CD CD . L 5 HOH A 1 210 1 HOH HOH . L 5 HOH A 2 211 2 HOH HOH . L 5 HOH A 3 212 3 HOH HOH . L 5 HOH A 4 213 4 HOH HOH . L 5 HOH A 5 214 5 HOH HOH . L 5 HOH A 6 215 6 HOH HOH . L 5 HOH A 7 216 7 HOH HOH . L 5 HOH A 8 217 8 HOH HOH . L 5 HOH A 9 218 9 HOH HOH . L 5 HOH A 10 219 10 HOH HOH . L 5 HOH A 11 220 11 HOH HOH . L 5 HOH A 12 221 12 HOH HOH . L 5 HOH A 13 222 13 HOH HOH . L 5 HOH A 14 223 14 HOH HOH . L 5 HOH A 15 224 15 HOH HOH . L 5 HOH A 16 225 16 HOH HOH . L 5 HOH A 17 226 17 HOH HOH . L 5 HOH A 18 227 18 HOH HOH . L 5 HOH A 19 228 19 HOH HOH . L 5 HOH A 20 229 20 HOH HOH . L 5 HOH A 21 230 21 HOH HOH . L 5 HOH A 22 231 22 HOH HOH . L 5 HOH A 23 232 23 HOH HOH . L 5 HOH A 24 233 24 HOH HOH . L 5 HOH A 25 234 25 HOH HOH . L 5 HOH A 26 235 26 HOH HOH . L 5 HOH A 27 236 27 HOH HOH . L 5 HOH A 28 237 28 HOH HOH . L 5 HOH A 29 238 29 HOH HOH . L 5 HOH A 30 239 30 HOH HOH . L 5 HOH A 31 240 31 HOH HOH . L 5 HOH A 32 241 32 HOH HOH . L 5 HOH A 33 242 33 HOH HOH . L 5 HOH A 34 243 34 HOH HOH . L 5 HOH A 35 244 35 HOH HOH . L 5 HOH A 36 245 36 HOH HOH . L 5 HOH A 37 246 37 HOH HOH . L 5 HOH A 38 247 38 HOH HOH . L 5 HOH A 39 248 39 HOH HOH . L 5 HOH A 40 249 40 HOH HOH . L 5 HOH A 41 250 41 HOH HOH . L 5 HOH A 42 251 42 HOH HOH . L 5 HOH A 43 252 43 HOH HOH . L 5 HOH A 44 253 44 HOH HOH . L 5 HOH A 45 254 45 HOH HOH . L 5 HOH A 46 255 46 HOH HOH . L 5 HOH A 47 256 47 HOH HOH . L 5 HOH A 48 257 48 HOH HOH . L 5 HOH A 49 258 49 HOH HOH . L 5 HOH A 50 259 50 HOH HOH . L 5 HOH A 51 260 51 HOH HOH . L 5 HOH A 52 261 52 HOH HOH . L 5 HOH A 53 262 53 HOH HOH . L 5 HOH A 54 263 54 HOH HOH . L 5 HOH A 55 264 55 HOH HOH . L 5 HOH A 56 265 56 HOH HOH . L 5 HOH A 57 266 57 HOH HOH . L 5 HOH A 58 267 58 HOH HOH . L 5 HOH A 59 268 59 HOH HOH . L 5 HOH A 60 269 60 HOH HOH . L 5 HOH A 61 270 61 HOH HOH . L 5 HOH A 62 271 62 HOH HOH . L 5 HOH A 63 272 63 HOH HOH . L 5 HOH A 64 273 64 HOH HOH . L 5 HOH A 65 274 65 HOH HOH . L 5 HOH A 66 275 66 HOH HOH . L 5 HOH A 67 276 67 HOH HOH . L 5 HOH A 68 277 68 HOH HOH . L 5 HOH A 69 278 69 HOH HOH . L 5 HOH A 70 279 70 HOH HOH . L 5 HOH A 71 280 71 HOH HOH . L 5 HOH A 72 281 72 HOH HOH . L 5 HOH A 73 282 73 HOH HOH . L 5 HOH A 74 283 74 HOH HOH . L 5 HOH A 75 284 75 HOH HOH . L 5 HOH A 76 285 76 HOH HOH . L 5 HOH A 77 286 77 HOH HOH . L 5 HOH A 78 287 78 HOH HOH . L 5 HOH A 79 288 79 HOH HOH . L 5 HOH A 80 289 80 HOH HOH . L 5 HOH A 81 290 81 HOH HOH . L 5 HOH A 82 291 82 HOH HOH . L 5 HOH A 83 292 83 HOH HOH . L 5 HOH A 84 293 84 HOH HOH . L 5 HOH A 85 294 85 HOH HOH . L 5 HOH A 86 295 86 HOH HOH . L 5 HOH A 87 296 87 HOH HOH . L 5 HOH A 88 297 88 HOH HOH . L 5 HOH A 89 298 89 HOH HOH . L 5 HOH A 90 299 90 HOH HOH . L 5 HOH A 91 300 91 HOH HOH . L 5 HOH A 92 301 92 HOH HOH . L 5 HOH A 93 302 93 HOH HOH . L 5 HOH A 94 303 94 HOH HOH . L 5 HOH A 95 304 95 HOH HOH . L 5 HOH A 96 305 96 HOH HOH . L 5 HOH A 97 306 97 HOH HOH . L 5 HOH A 98 307 98 HOH HOH . L 5 HOH A 99 308 99 HOH HOH . L 5 HOH A 100 309 100 HOH HOH . L 5 HOH A 101 310 101 HOH HOH . L 5 HOH A 102 311 102 HOH HOH . L 5 HOH A 103 312 103 HOH HOH . L 5 HOH A 104 313 104 HOH HOH . L 5 HOH A 105 314 105 HOH HOH . L 5 HOH A 106 315 106 HOH HOH . L 5 HOH A 107 316 107 HOH HOH . L 5 HOH A 108 317 108 HOH HOH . L 5 HOH A 109 318 109 HOH HOH . L 5 HOH A 110 319 110 HOH HOH . L 5 HOH A 111 320 111 HOH HOH . L 5 HOH A 112 321 112 HOH HOH . L 5 HOH A 113 322 113 HOH HOH . L 5 HOH A 114 323 114 HOH HOH . L 5 HOH A 115 324 115 HOH HOH . L 5 HOH A 116 325 116 HOH HOH . L 5 HOH A 117 326 117 HOH HOH . L 5 HOH A 118 327 118 HOH HOH . L 5 HOH A 119 328 119 HOH HOH . L 5 HOH A 120 329 120 HOH HOH . L 5 HOH A 121 330 121 HOH HOH . L 5 HOH A 122 331 122 HOH HOH . L 5 HOH A 123 332 123 HOH HOH . L 5 HOH A 124 333 124 HOH HOH . L 5 HOH A 125 334 125 HOH HOH . L 5 HOH A 126 335 126 HOH HOH . L 5 HOH A 127 336 127 HOH HOH . L 5 HOH A 128 337 128 HOH HOH . L 5 HOH A 129 338 129 HOH HOH . L 5 HOH A 130 339 130 HOH HOH . L 5 HOH A 131 340 131 HOH HOH . L 5 HOH A 132 341 132 HOH HOH . L 5 HOH A 133 342 133 HOH HOH . L 5 HOH A 134 343 134 HOH HOH . L 5 HOH A 135 344 135 HOH HOH . L 5 HOH A 136 345 136 HOH HOH . L 5 HOH A 137 346 137 HOH HOH . L 5 HOH A 138 347 138 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 MTX . . . B 2 13.79 -8.071 -15.375 1 13.8 ? N1 MTX 200 A 1 HETATM 2 C C2 MTX . . . B 2 13.567 -8.102 -14.034 1 15.38 ? C2 MTX 200 A 1 HETATM 3 N NA2 MTX . . . B 2 13.322 -9.302 -13.438 1 13.66 ? NA2 MTX 200 A 1 HETATM 4 N N3 MTX . . . B 2 13.617 -6.946 -13.289 1 13.89 ? N3 MTX 200 A 1 HETATM 5 C C4 MTX . . . B 2 13.853 -5.739 -13.828 1 12.83 ? C4 MTX 200 A 1 HETATM 6 N NA4 MTX . . . B 2 13.875 -4.569 -13.101 1 13.96 ? NA4 MTX 200 A 1 HETATM 7 C C4A MTX . . . B 2 14.097 -5.666 -15.241 1 14.16 ? C4A MTX 200 A 1 HETATM 8 N N5 MTX . . . B 2 14.362 -4.45 -15.814 1 14.98 ? N5 MTX 200 A 1 HETATM 9 C C6 MTX . . . B 2 14.557 -4.434 -17.131 1 13.84 ? C6 MTX 200 A 1 HETATM 10 C C7 MTX . . . B 2 14.508 -5.655 -17.876 1 13.62 ? C7 MTX 200 A 1 HETATM 11 N N8 MTX . . . B 2 14.262 -6.853 -17.346 1 14.98 ? N8 MTX 200 A 1 HETATM 12 C C8A MTX . . . B 2 14.054 -6.869 -15.979 1 14.41 ? C8A MTX 200 A 1 HETATM 13 C C9 MTX . . . B 2 14.827 -3.062 -17.671 1 15.12 ? C9 MTX 200 A 1 HETATM 14 N N10 MTX . . . B 2 14.765 -3.004 -19.158 1 14.62 ? N10 MTX 200 A 1 HETATM 15 C CM MTX . . . B 2 15.953 -2.993 -20.018 1 16.39 ? CM MTX 200 A 1 HETATM 16 C C11 MTX . . . B 2 10.983 -3.632 -20.986 1 15.05 ? C11 MTX 200 A 1 HETATM 17 C C12 MTX . . . B 2 11.04 -3.514 -19.584 1 13.96 ? C12 MTX 200 A 1 HETATM 18 C C13 MTX . . . B 2 12.291 -3.295 -19.017 1 14.02 ? C13 MTX 200 A 1 HETATM 19 C C14 MTX . . . B 2 13.495 -3.214 -19.75 1 15.03 ? C14 MTX 200 A 1 HETATM 20 C C15 MTX . . . B 2 13.398 -3.346 -21.155 1 14.67 ? C15 MTX 200 A 1 HETATM 21 C C16 MTX . . . B 2 12.163 -3.541 -21.733 1 15.01 ? C16 MTX 200 A 1 HETATM 22 C C MTX . . . B 2 9.741 -3.857 -21.751 1 16 ? C MTX 200 A 1 HETATM 23 O O MTX . . . B 2 9.603 -3.505 -22.929 1 16.55 ? O MTX 200 A 1 HETATM 24 N N MTX . . . B 2 8.685 -4.255 -20.979 1 15.7 ? N MTX 200 A 1 HETATM 25 C CA MTX . . . B 2 7.335 -4.206 -21.526 1 16.18 ? CA MTX 200 A 1 HETATM 26 C CT MTX . . . B 2 6.342 -4.358 -20.394 1 16.31 ? CT MTX 200 A 1 HETATM 27 O O1 MTX . . . B 2 5.136 -4.255 -20.66 1 16.74 ? O1 MTX 200 A 1 HETATM 28 O O2 MTX . . . B 2 6.796 -4.533 -19.237 1 15.2 ? O2 MTX 200 A 1 HETATM 29 C CB MTX . . . B 2 7.101 -5.3 -22.574 1 16.98 ? CB MTX 200 A 1 HETATM 30 C CG MTX . . . B 2 7.244 -6.664 -21.912 1 17.62 ? CG MTX 200 A 1 HETATM 31 C CD MTX . . . B 2 7.341 -7.799 -22.915 1 23.15 ? CD MTX 200 A 1 HETATM 32 O OE1 MTX . . . B 2 7.316 -7.545 -24.145 1 26.29 ? OE1 MTX 200 A 1 HETATM 33 O OE2 MTX . . . B 2 7.45 -8.954 -22.465 1 20.73 ? OE2 MTX 200 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 33 #