data_3EIU # _model_server_result.job_id 2QgzdAG96X8BM21yNyv1xQ _model_server_result.datetime_utc '2025-02-27 16:54:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3eiu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":461}' # _entry.id 3EIU # _exptl.entry_id 3EIU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3EIU _cell.length_a 75.693 _cell.length_b 96.867 _cell.length_c 129.631 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EIU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 93 n n PG O2G ATP sing 94 n n PG O3G ATP sing 95 n n PG O3B ATP sing 96 n n O2G HOG2 ATP sing 97 n n O3G HOG3 ATP sing 98 n n PB O1B ATP doub 99 n n PB O2B ATP sing 100 n n PB O3B ATP sing 101 n n PB O3A ATP sing 102 n n O2B HOB2 ATP sing 103 n n PA O1A ATP doub 104 n n PA O2A ATP sing 105 n n PA O3A ATP sing 106 n n PA O5' ATP sing 107 n n O2A HOA2 ATP sing 108 n n O5' C5' ATP sing 109 n n C5' C4' ATP sing 110 n n C5' "H5'1" ATP sing 111 n n C5' "H5'2" ATP sing 112 n n C4' O4' ATP sing 113 n n C4' C3' ATP sing 114 n n C4' H4' ATP sing 115 n n O4' C1' ATP sing 116 n n C3' O3' ATP sing 117 n n C3' C2' ATP sing 118 n n C3' H3' ATP sing 119 n n O3' HO3' ATP sing 120 n n C2' O2' ATP sing 121 n n C2' C1' ATP sing 122 n n C2' H2' ATP sing 123 n n O2' HO2' ATP sing 124 n n C1' N9 ATP sing 125 n n C1' H1' ATP sing 126 n n N9 C8 ATP sing 127 n y N9 C4 ATP sing 128 n y C8 N7 ATP doub 129 n y C8 H8 ATP sing 130 n n N7 C5 ATP sing 131 n y C5 C6 ATP sing 132 n y C5 C4 ATP doub 133 n y C6 N6 ATP sing 134 n n C6 N1 ATP doub 135 n y N6 HN61 ATP sing 136 n n N6 HN62 ATP sing 137 n n N1 C2 ATP sing 138 n y C2 N3 ATP doub 139 n y C2 H2 ATP sing 140 n n N3 C4 ATP sing 141 n y # _atom_sites.entry_id 3EIU _atom_sites.fract_transf_matrix[1][1] 0.013211 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010323 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007714 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP A 1 461 1 ATP ATP . D 3 AES B 1 461 1 AES AES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 2 -21.756 -1.368 2.667 0.5 80.47 ? PG ATP 461 A 1 HETATM 2 O O1G ATP . . . C 2 -22.947 -0.438 2.655 0.5 80.52 ? O1G ATP 461 A 1 HETATM 3 O O2G ATP . . . C 2 -22.121 -2.831 2.622 0.5 80.44 ? O2G ATP 461 A 1 HETATM 4 O O3G ATP . . . C 2 -20.662 -0.978 1.702 0.5 80.47 ? O3G ATP 461 A 1 HETATM 5 P PB ATP . . . C 2 -21.921 -0.874 5.453 0.5 80.1 ? PB ATP 461 A 1 HETATM 6 O O1B ATP . . . C 2 -20.983 -1.018 6.629 0.5 79.86 ? O1B ATP 461 A 1 HETATM 7 O O2B ATP . . . C 2 -23.196 -1.682 5.388 0.5 79.96 ? O2B ATP 461 A 1 HETATM 8 O O3B ATP . . . C 2 -21.069 -1.175 4.116 0.5 80.23 ? O3B ATP 461 A 1 HETATM 9 P PA ATP . . . C 2 -23.305 1.499 6.265 0.5 80.01 ? PA ATP 461 A 1 HETATM 10 O O1A ATP . . . C 2 -24.193 0.526 7.007 0.5 79.93 ? O1A ATP 461 A 1 HETATM 11 O O2A ATP . . . C 2 -23.936 2.606 5.454 0.5 79.93 ? O2A ATP 461 A 1 HETATM 12 O O3A ATP . . . C 2 -22.294 0.691 5.29 0.5 80.2 ? O3A ATP 461 A 1 HETATM 13 O O5' ATP . . . C 2 -22.315 2.187 7.334 0.5 79.48 ? O5' ATP 461 A 1 HETATM 14 C C5' ATP . . . C 2 -21.125 2.842 6.904 0.5 78.98 ? C5' ATP 461 A 1 HETATM 15 C C4' ATP . . . C 2 -19.961 2.356 7.758 0.5 78.76 ? C4' ATP 461 A 1 HETATM 16 O O4' ATP . . . C 2 -18.824 2.081 6.934 0.5 78.69 ? O4' ATP 461 A 1 HETATM 17 C C3' ATP . . . C 2 -19.558 3.415 8.77 0.5 78.63 ? C3' ATP 461 A 1 HETATM 18 O O3' ATP . . . C 2 -19.567 2.84 10.08 0.5 78.43 ? O3' ATP 461 A 1 HETATM 19 C C2' ATP . . . C 2 -18.165 3.87 8.365 0.5 78.67 ? C2' ATP 461 A 1 HETATM 20 O O2' ATP . . . C 2 -17.269 3.9 9.482 0.5 78.64 ? O2' ATP 461 A 1 HETATM 21 C C1' ATP . . . C 2 -17.69 2.864 7.325 0.5 78.6 ? C1' ATP 461 A 1 HETATM 22 N N9 ATP . . . C 2 -17.117 3.564 6.144 0.5 78.56 ? N9 ATP 461 A 1 HETATM 23 C C8 ATP . . . C 2 -17.794 3.925 5.036 0.5 78.52 ? C8 ATP 461 A 1 HETATM 24 N N7 ATP . . . C 2 -16.981 4.542 4.143 0.5 78.57 ? N7 ATP 461 A 1 HETATM 25 C C5 ATP . . . C 2 -15.748 4.583 4.68 0.5 78.56 ? C5 ATP 461 A 1 HETATM 26 C C6 ATP . . . C 2 -14.416 5.096 4.269 0.5 78.53 ? C6 ATP 461 A 1 HETATM 27 N N6 ATP . . . C 2 -14.243 5.704 3.07 0.5 78.48 ? N6 ATP 461 A 1 HETATM 28 N N1 ATP . . . C 2 -13.381 4.937 5.13 0.5 78.49 ? N1 ATP 461 A 1 HETATM 29 C C2 ATP . . . C 2 -13.538 4.334 6.327 0.5 78.48 ? C2 ATP 461 A 1 HETATM 30 N N3 ATP . . . C 2 -14.717 3.846 6.762 0.5 78.43 ? N3 ATP 461 A 1 HETATM 31 C C4 ATP . . . C 2 -15.84 3.937 6 0.5 78.51 ? C4 ATP 461 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 31 #