data_3EIY # _model_server_result.job_id 7GrOHtL0q2VWF8yShRmduQ _model_server_result.datetime_utc '2024-11-07 21:34:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3eiy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":177}' # _entry.id 3EIY # _exptl.entry_id 3EIY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3EIY _cell.length_a 100.952 _cell.length_b 100.952 _cell.length_c 111.233 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EIY _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 software_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1,2,3,4,5,6 A,B,C,D,E,F,G,H,I 2 1,2,3 A,B,C,D,E,F,G,H,I 3 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 50.476 87.426997 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -50.476 87.426997 0 4 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/2 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 50.476 87.426997 55.6165 5 'crystal symmetry operation' 11_555 -x+y,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 55.6165 6 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -50.476 87.426997 55.6165 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 32 A ASP 11 1_555 B K K . A K 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? metalc ? metalc2 A O LEU 33 A LEU 12 1_555 B K K . A K 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc3 A OE1 GLN 35 A GLN 14 1_555 B K K . A K 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.922 ? metalc ? metalc4 A OD2 ASP 92 A ASP 71 1_555 D NA NA . A NA 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.808 ? metalc ? metalc5 A OD2 ASP 119 A ASP 98 1_555 C NA NA . A NA 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? metalc ? metalc6 A OD2 ASP 124 A ASP 103 1_555 C NA NA . A NA 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc7 A OD1 ASP 124 A ASP 103 1_555 D NA NA . A NA 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc8 A O ALA 125 A ALA 104 1_555 D NA NA . A NA 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? metalc ? metalc9 C NA NA . A NA 177 1_555 E O6 POP . A POP 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc10 C NA NA . A NA 177 1_555 E O3 POP . A POP 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc11 C NA NA . A NA 177 1_555 I O HOH . A HOH 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc12 C NA NA . A NA 177 1_555 I O HOH . A HOH 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? metalc ? metalc13 D NA NA . A NA 178 1_555 I O HOH . A HOH 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? metalc ? metalc14 D NA NA . A NA 178 1_555 I O HOH . A HOH 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.855 ? metalc ? metalc15 D NA NA . A NA 178 1_555 I O HOH . A HOH 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3EIY _atom_sites.fract_transf_matrix[1][1] 0.009906 _atom_sites.fract_transf_matrix[1][2] 0.005719 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011438 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00899 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K A 1 176 4 K K . C 3 NA A 1 177 5 NA NA . D 3 NA A 1 178 6 NA NA . E 4 POP A 1 179 1 POP POP . F 5 PG4 A 1 180 1 PG4 PG4 . G 6 PEG A 1 181 2 PEG PEG . H 6 PEG A 1 182 3 PEG PEG . I 7 HOH A 1 183 1 HOH HOH . I 7 HOH A 2 184 2 HOH HOH . I 7 HOH A 3 185 3 HOH HOH . I 7 HOH A 4 186 4 HOH HOH . I 7 HOH A 5 187 5 HOH HOH . I 7 HOH A 6 188 6 HOH HOH . I 7 HOH A 7 189 7 HOH HOH . I 7 HOH A 8 190 8 HOH HOH . I 7 HOH A 9 191 9 HOH HOH . I 7 HOH A 10 192 10 HOH HOH . I 7 HOH A 11 193 11 HOH HOH . I 7 HOH A 12 194 12 HOH HOH . I 7 HOH A 13 195 13 HOH HOH . I 7 HOH A 14 196 14 HOH HOH . I 7 HOH A 15 197 15 HOH HOH . I 7 HOH A 16 198 16 HOH HOH . I 7 HOH A 17 199 17 HOH HOH . I 7 HOH A 18 200 18 HOH HOH . I 7 HOH A 19 201 19 HOH HOH . I 7 HOH A 20 202 20 HOH HOH . I 7 HOH A 21 203 21 HOH HOH . I 7 HOH A 22 204 22 HOH HOH . I 7 HOH A 23 205 23 HOH HOH . I 7 HOH A 24 206 24 HOH HOH . I 7 HOH A 25 207 25 HOH HOH . I 7 HOH A 26 208 26 HOH HOH . I 7 HOH A 27 209 27 HOH HOH . I 7 HOH A 28 210 28 HOH HOH . I 7 HOH A 29 211 29 HOH HOH . I 7 HOH A 30 212 30 HOH HOH . I 7 HOH A 31 213 31 HOH HOH . I 7 HOH A 32 214 32 HOH HOH . I 7 HOH A 33 215 33 HOH HOH . I 7 HOH A 34 216 34 HOH HOH . I 7 HOH A 35 217 35 HOH HOH . I 7 HOH A 36 218 36 HOH HOH . I 7 HOH A 37 219 37 HOH HOH . I 7 HOH A 38 220 38 HOH HOH . I 7 HOH A 39 221 39 HOH HOH . I 7 HOH A 40 222 40 HOH HOH . I 7 HOH A 41 223 41 HOH HOH . I 7 HOH A 42 224 42 HOH HOH . I 7 HOH A 43 225 43 HOH HOH . I 7 HOH A 44 226 44 HOH HOH . I 7 HOH A 45 227 45 HOH HOH . I 7 HOH A 46 228 46 HOH HOH . I 7 HOH A 47 229 47 HOH HOH . I 7 HOH A 48 230 48 HOH HOH . I 7 HOH A 49 231 49 HOH HOH . I 7 HOH A 50 232 51 HOH HOH . I 7 HOH A 51 233 52 HOH HOH . I 7 HOH A 52 234 53 HOH HOH . I 7 HOH A 53 235 54 HOH HOH . I 7 HOH A 54 236 55 HOH HOH . I 7 HOH A 55 237 56 HOH HOH . I 7 HOH A 56 238 58 HOH HOH . I 7 HOH A 57 239 59 HOH HOH . I 7 HOH A 58 240 60 HOH HOH . I 7 HOH A 59 241 61 HOH HOH . I 7 HOH A 60 242 62 HOH HOH . I 7 HOH A 61 243 63 HOH HOH . I 7 HOH A 62 244 64 HOH HOH . I 7 HOH A 63 245 65 HOH HOH . I 7 HOH A 64 246 66 HOH HOH . I 7 HOH A 65 247 67 HOH HOH . I 7 HOH A 66 248 68 HOH HOH . I 7 HOH A 67 249 69 HOH HOH . I 7 HOH A 68 250 70 HOH HOH . I 7 HOH A 69 251 71 HOH HOH . I 7 HOH A 70 252 72 HOH HOH . I 7 HOH A 71 253 73 HOH HOH . I 7 HOH A 72 254 74 HOH HOH . I 7 HOH A 73 255 75 HOH HOH . I 7 HOH A 74 256 76 HOH HOH . I 7 HOH A 75 257 77 HOH HOH . I 7 HOH A 76 258 78 HOH HOH . I 7 HOH A 77 259 79 HOH HOH . I 7 HOH A 78 260 80 HOH HOH . I 7 HOH A 79 261 81 HOH HOH . I 7 HOH A 80 262 82 HOH HOH . I 7 HOH A 81 263 83 HOH HOH . I 7 HOH A 82 264 84 HOH HOH . I 7 HOH A 83 265 85 HOH HOH . I 7 HOH A 84 266 86 HOH HOH . I 7 HOH A 85 267 87 HOH HOH . I 7 HOH A 86 268 88 HOH HOH . I 7 HOH A 87 269 89 HOH HOH . I 7 HOH A 88 270 91 HOH HOH . I 7 HOH A 89 271 92 HOH HOH . I 7 HOH A 90 272 93 HOH HOH . I 7 HOH A 91 273 95 HOH HOH . I 7 HOH A 92 274 96 HOH HOH . I 7 HOH A 93 275 97 HOH HOH . I 7 HOH A 94 276 98 HOH HOH . I 7 HOH A 95 277 99 HOH HOH . I 7 HOH A 96 278 100 HOH HOH . I 7 HOH A 97 279 101 HOH HOH . I 7 HOH A 98 280 102 HOH HOH . I 7 HOH A 99 281 103 HOH HOH . I 7 HOH A 100 282 104 HOH HOH . I 7 HOH A 101 283 105 HOH HOH . I 7 HOH A 102 284 106 HOH HOH . I 7 HOH A 103 285 108 HOH HOH . I 7 HOH A 104 286 109 HOH HOH . I 7 HOH A 105 287 111 HOH HOH . I 7 HOH A 106 288 112 HOH HOH . I 7 HOH A 107 289 117 HOH HOH . I 7 HOH A 108 290 118 HOH HOH . I 7 HOH A 109 291 119 HOH HOH . I 7 HOH A 110 292 121 HOH HOH . I 7 HOH A 111 293 122 HOH HOH . I 7 HOH A 112 294 123 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 1.633 _atom_site.Cartn_y 34.181 _atom_site.Cartn_z 11.897 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 26.73 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 177 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #