data_3EJ5 # _model_server_result.job_id HHtjrMIxuFyFCxaxlBpHMQ _model_server_result.datetime_utc '2025-03-05 19:15:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ej5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 3EJ5 # _exptl.entry_id 3EJ5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 289.287 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-[3-(2-amino-4-hydroxy-6-oxo-1,6-dihydropyrimidin-5-yl)propyl]benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.97 _cell.angle_gamma 90 _cell.entry_id 3EJ5 _cell.length_a 42.642 _cell.length_b 68.006 _cell.length_c 49.675 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EJ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H15 N3 O4' _chem_comp.formula_weight 289.287 _chem_comp.id EJ5 _chem_comp.mon_nstd_flag . _chem_comp.name '4-[3-(2-amino-4-hydroxy-6-oxo-1,6-dihydropyrimidin-5-yl)propyl]benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAF CAH EJ5 sing 83 n y CAF HAF EJ5 sing 84 n n CAH CAR EJ5 doub 85 n y CAH HAH EJ5 sing 86 n n CAR CAO EJ5 sing 87 n n CAO OAD EJ5 sing 88 n n OAD HOAD EJ5 sing 89 n n OAB CAO EJ5 doub 90 n n CAI CAR EJ5 sing 91 n y CAG CAI EJ5 doub 92 n y CAG HAG EJ5 sing 93 n n CAQ CAF EJ5 doub 94 n y CAQ CAG EJ5 sing 95 n y CAK CAQ EJ5 sing 96 n n CAK CAJ EJ5 sing 97 n n CAK HAK EJ5 sing 98 n n CAK HAKA EJ5 sing 99 n n CAJ CAL EJ5 sing 100 n n CAJ HAJ EJ5 sing 101 n n CAJ HAJA EJ5 sing 102 n n CAL CAT EJ5 sing 103 n n CAL HAL EJ5 sing 104 n n CAT CAU EJ5 sing 105 n n CAS CAT EJ5 doub 106 n n CAS NAM EJ5 sing 107 n n OAE CAS EJ5 sing 108 n n NAM CAP EJ5 doub 109 n n CAP NAN EJ5 sing 110 n n CAP NAA EJ5 sing 111 n n NAA HNAA EJ5 sing 112 n n NAA HNAB EJ5 sing 113 n n CAU NAN EJ5 sing 114 n n CAU OAC EJ5 doub 115 n n CAI HAI EJ5 sing 116 n n CAL H13 EJ5 sing 117 n n OAE H14 EJ5 sing 118 n n NAN HNAN EJ5 sing 119 n n # _atom_sites.entry_id 3EJ5 _atom_sites.fract_transf_matrix[1][1] 0.023451 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009941 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014705 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021865 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EJ5 X 1 300 300 EJ5 EJ5 . C 3 HOH X 1 301 1 HOH HOH . C 3 HOH X 2 302 2 HOH HOH . C 3 HOH X 3 303 3 HOH HOH . C 3 HOH X 4 304 4 HOH HOH . C 3 HOH X 5 305 5 HOH HOH . C 3 HOH X 6 306 6 HOH HOH . C 3 HOH X 7 307 7 HOH HOH . C 3 HOH X 8 308 8 HOH HOH . C 3 HOH X 9 309 9 HOH HOH . C 3 HOH X 10 310 10 HOH HOH . C 3 HOH X 11 311 11 HOH HOH . C 3 HOH X 12 312 12 HOH HOH . C 3 HOH X 13 313 13 HOH HOH . C 3 HOH X 14 314 14 HOH HOH . C 3 HOH X 15 315 15 HOH HOH . C 3 HOH X 16 316 16 HOH HOH . C 3 HOH X 17 317 17 HOH HOH . C 3 HOH X 18 318 18 HOH HOH . C 3 HOH X 19 319 19 HOH HOH . C 3 HOH X 20 320 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAF EJ5 . . . B 2 -2.067 9.453 5.168 1 59.55 ? CAF EJ5 300 X 1 HETATM 2 C CAH EJ5 . . . B 2 -1.594 10.504 5.971 1 62.39 ? CAH EJ5 300 X 1 HETATM 3 C CAR EJ5 . . . B 2 -0.438 10.347 6.759 1 64.42 ? CAR EJ5 300 X 1 HETATM 4 C CAO EJ5 . . . B 2 0.129 11.479 7.657 1 62.92 ? CAO EJ5 300 X 1 HETATM 5 O OAD EJ5 . . . B 2 0.258 11.249 8.89 1 65.14 ? OAD EJ5 300 X 1 HETATM 6 O OAB EJ5 . . . B 2 0.448 12.562 7.1 1 62.91 ? OAB EJ5 300 X 1 HETATM 7 C CAI EJ5 . . . B 2 0.233 9.128 6.728 1 60.97 ? CAI EJ5 300 X 1 HETATM 8 C CAG EJ5 . . . B 2 -0.237 8.098 5.923 1 57.79 ? CAG EJ5 300 X 1 HETATM 9 C CAQ EJ5 . . . B 2 -1.389 8.238 5.142 1 53.96 ? CAQ EJ5 300 X 1 HETATM 10 C CAK EJ5 . . . B 2 -1.88 7.061 4.268 1 53.42 ? CAK EJ5 300 X 1 HETATM 11 C CAJ EJ5 . . . B 2 -0.859 5.901 4.29 1 37.06 ? CAJ EJ5 300 X 1 HETATM 12 C CAL EJ5 . . . B 2 -0.948 5.107 5.627 1 28.97 ? CAL EJ5 300 X 1 HETATM 13 C CAT EJ5 . . . B 2 0.343 4.698 6.393 1 25.22 ? CAT EJ5 300 X 1 HETATM 14 C CAS EJ5 . . . B 2 0.286 4.032 7.649 1 29.86 ? CAS EJ5 300 X 1 HETATM 15 O OAE EJ5 . . . B 2 -0.876 3.715 8.249 1 29.49 ? OAE EJ5 300 X 1 HETATM 16 N NAM EJ5 . . . B 2 1.356 3.638 8.353 1 28.77 ? NAM EJ5 300 X 1 HETATM 17 C CAP EJ5 . . . B 2 2.583 3.856 7.898 1 29.13 ? CAP EJ5 300 X 1 HETATM 18 N NAA EJ5 . . . B 2 3.617 3.445 8.641 1 25.85 ? NAA EJ5 300 X 1 HETATM 19 N NAN EJ5 . . . B 2 2.733 4.509 6.648 1 25.1 ? NAN EJ5 300 X 1 HETATM 20 C CAU EJ5 . . . B 2 1.629 4.929 5.898 1 29.94 ? CAU EJ5 300 X 1 HETATM 21 O OAC EJ5 . . . B 2 1.826 5.498 4.813 1 32.28 ? OAC EJ5 300 X 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 361 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 21 #