data_3EJH
#
_model_server_result.job_id            EQRooBoTC-vacsh3TQum8Q 
_model_server_result.datetime_utc      '2024-12-22 08:21:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ejh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1}' 
#
_entry.id    3EJH 
#
_exptl.entry_id    3EJH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3EJH 
_cell.length_a            56.84 
_cell.length_b            56.84 
_cell.length_c            150.22 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3EJH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,H,I 1 1 
C,D,F,G,J,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 3 A CYS 518 1_555 A SG CYS 30 A CYS 545 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 A SG CYS 28 A CYS 543 1_555 A SG CYS 40 A CYS 555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
disulf ? disulf3 A SG CYS 46 A CYS 561 1_555 A SG CYS 74 A CYS 589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 A SG CYS 72 A CYS 587 1_555 A SG CYS 84 A CYS 599 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
disulf ? disulf5 C SG CYS 3 B CYS 518 1_555 C SG CYS 30 B CYS 545 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf6 C SG CYS 28 B CYS 543 1_555 C SG CYS 40 B CYS 555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
disulf ? disulf7 C SG CYS 46 B CYS 561 1_555 C SG CYS 74 B CYS 589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf8 C SG CYS 72 B CYS 587 1_555 C SG CYS 84 B CYS 599 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
covale ? covale1 E C1 NAG . A NAG 1 1_555 A ND2 ASN 27 A ASN 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale2 B C LEU 8 E LEU 963 1_555 B N HYP 9 E HYP 964 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? 
covale ? covale3 B C HYP 9 E HYP 964 1_555 B N GLY 10 E GLY 965 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale4 B C PHE 17 E PHE 972 1_555 B N HYP 18 E HYP 973 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale5 B C HYP 18 E HYP 973 1_555 B N GLY 19 E GLY 974 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale6 F C1 NAG . B NAG 1 1_555 C ND2 ASN 27 B ASN 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
covale ? covale7 D C LEU 8 F LEU 963 1_555 D N HYP 9 F HYP 964 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale8 D C HYP 9 F HYP 964 1_555 D N GLY 10 F GLY 965 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale9 D C PHE 17 F PHE 972 1_555 D N HYP 18 F HYP 973 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale10 D C HYP 18 F HYP 973 1_555 D N GLY 19 F GLY 974 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale11 D C LEU 20 F LEU 975 1_555 D N HYP 21 F HYP 976 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale12 D C HYP 21 F HYP 976 1_555 D N GLY 22 F GLY 977 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 256 n n 
C1 O1 NAG sing 257 n n 
C1 O5 NAG sing 258 n n 
C1 H1 NAG sing 259 n n 
C2 C3 NAG sing 260 n n 
C2 N2 NAG sing 261 n n 
C2 H2 NAG sing 262 n n 
C3 C4 NAG sing 263 n n 
C3 O3 NAG sing 264 n n 
C3 H3 NAG sing 265 n n 
C4 C5 NAG sing 266 n n 
C4 O4 NAG sing 267 n n 
C4 H4 NAG sing 268 n n 
C5 C6 NAG sing 269 n n 
C5 O5 NAG sing 270 n n 
C5 H5 NAG sing 271 n n 
C6 O6 NAG sing 272 n n 
C6 H61 NAG sing 273 n n 
C6 H62 NAG sing 274 n n 
C7 C8 NAG sing 275 n n 
C7 N2 NAG sing 276 n n 
C7 O7 NAG doub 277 n n 
C8 H81 NAG sing 278 n n 
C8 H82 NAG sing 279 n n 
C8 H83 NAG sing 280 n n 
N2 HN2 NAG sing 281 n n 
O1 HO1 NAG sing 282 n n 
O3 HO3 NAG sing 283 n n 
O4 HO4 NAG sing 284 n n 
O6 HO6 NAG sing 285 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     3EJH 
_atom_sites.fract_transf_matrix[1][1]    0.017593 
_atom_sites.fract_transf_matrix[1][2]    0.010157 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020315 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006657 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 NAG A 1 1 1 NAG NAG . 
F 3 NAG B 1 1 1 NAG NAG . 
G 4 GOL B 1 609 1 GOL GOL . 
H 5 HOH A 1 76 76 HOH HOH . 
H 5 HOH A 2 80 80 HOH HOH . 
H 5 HOH A 3 609 1 HOH HOH . 
H 5 HOH A 4 610 3 HOH HOH . 
H 5 HOH A 5 611 5 HOH HOH . 
H 5 HOH A 6 612 10 HOH HOH . 
H 5 HOH A 7 613 12 HOH HOH . 
H 5 HOH A 8 614 13 HOH HOH . 
H 5 HOH A 9 615 14 HOH HOH . 
H 5 HOH A 10 616 15 HOH HOH . 
H 5 HOH A 11 617 16 HOH HOH . 
H 5 HOH A 12 618 19 HOH HOH . 
H 5 HOH A 13 619 21 HOH HOH . 
H 5 HOH A 14 620 22 HOH HOH . 
H 5 HOH A 15 621 25 HOH HOH . 
H 5 HOH A 16 622 27 HOH HOH . 
H 5 HOH A 17 623 29 HOH HOH . 
H 5 HOH A 18 624 30 HOH HOH . 
H 5 HOH A 19 625 31 HOH HOH . 
H 5 HOH A 20 626 35 HOH HOH . 
H 5 HOH A 21 627 39 HOH HOH . 
H 5 HOH A 22 628 45 HOH HOH . 
H 5 HOH A 23 629 46 HOH HOH . 
H 5 HOH A 24 630 48 HOH HOH . 
H 5 HOH A 25 631 49 HOH HOH . 
H 5 HOH A 26 632 50 HOH HOH . 
H 5 HOH A 27 633 52 HOH HOH . 
H 5 HOH A 28 634 53 HOH HOH . 
H 5 HOH A 29 635 61 HOH HOH . 
H 5 HOH A 30 636 62 HOH HOH . 
H 5 HOH A 31 637 64 HOH HOH . 
H 5 HOH A 32 638 65 HOH HOH . 
H 5 HOH A 33 639 66 HOH HOH . 
H 5 HOH A 34 640 68 HOH HOH . 
H 5 HOH A 35 641 70 HOH HOH . 
H 5 HOH A 36 642 72 HOH HOH . 
H 5 HOH A 37 643 73 HOH HOH . 
H 5 HOH A 38 644 75 HOH HOH . 
H 5 HOH A 39 645 78 HOH HOH . 
H 5 HOH A 40 646 79 HOH HOH . 
H 5 HOH A 41 647 81 HOH HOH . 
H 5 HOH A 42 648 83 HOH HOH . 
H 5 HOH A 43 649 87 HOH HOH . 
H 5 HOH A 44 650 89 HOH HOH . 
H 5 HOH A 45 651 94 HOH HOH . 
H 5 HOH A 46 652 96 HOH HOH . 
H 5 HOH A 47 653 97 HOH HOH . 
H 5 HOH A 48 654 99 HOH HOH . 
H 5 HOH A 49 655 101 HOH HOH . 
H 5 HOH A 50 656 103 HOH HOH . 
I 5 HOH E 1 26 26 HOH HOH . 
I 5 HOH E 2 32 32 HOH HOH . 
I 5 HOH E 3 41 41 HOH HOH . 
I 5 HOH E 4 44 44 HOH HOH . 
I 5 HOH E 5 67 67 HOH HOH . 
I 5 HOH E 6 71 71 HOH HOH . 
I 5 HOH E 7 84 84 HOH HOH . 
I 5 HOH E 8 91 91 HOH HOH . 
I 5 HOH E 9 92 92 HOH HOH . 
I 5 HOH E 10 105 105 HOH HOH . 
J 5 HOH B 1 2 2 HOH HOH . 
J 5 HOH B 2 4 4 HOH HOH . 
J 5 HOH B 3 6 6 HOH HOH . 
J 5 HOH B 4 7 7 HOH HOH . 
J 5 HOH B 5 8 8 HOH HOH . 
J 5 HOH B 6 9 9 HOH HOH . 
J 5 HOH B 7 11 11 HOH HOH . 
J 5 HOH B 8 17 17 HOH HOH . 
J 5 HOH B 9 20 20 HOH HOH . 
J 5 HOH B 10 23 23 HOH HOH . 
J 5 HOH B 11 24 24 HOH HOH . 
J 5 HOH B 12 33 33 HOH HOH . 
J 5 HOH B 13 34 34 HOH HOH . 
J 5 HOH B 14 37 37 HOH HOH . 
J 5 HOH B 15 38 38 HOH HOH . 
J 5 HOH B 16 43 43 HOH HOH . 
J 5 HOH B 17 47 47 HOH HOH . 
J 5 HOH B 18 51 51 HOH HOH . 
J 5 HOH B 19 54 54 HOH HOH . 
J 5 HOH B 20 55 55 HOH HOH . 
J 5 HOH B 21 56 56 HOH HOH . 
J 5 HOH B 22 57 57 HOH HOH . 
J 5 HOH B 23 58 58 HOH HOH . 
J 5 HOH B 24 59 59 HOH HOH . 
J 5 HOH B 25 60 60 HOH HOH . 
J 5 HOH B 26 63 63 HOH HOH . 
J 5 HOH B 27 82 82 HOH HOH . 
J 5 HOH B 28 85 85 HOH HOH . 
J 5 HOH B 29 86 86 HOH HOH . 
J 5 HOH B 30 88 88 HOH HOH . 
J 5 HOH B 31 90 90 HOH HOH . 
J 5 HOH B 32 93 93 HOH HOH . 
J 5 HOH B 33 95 95 HOH HOH . 
J 5 HOH B 34 98 98 HOH HOH . 
J 5 HOH B 35 102 102 HOH HOH . 
K 5 HOH F 1 18 18 HOH HOH . 
K 5 HOH F 2 28 28 HOH HOH . 
K 5 HOH F 3 36 36 HOH HOH . 
K 5 HOH F 4 40 40 HOH HOH . 
K 5 HOH F 5 42 42 HOH HOH . 
K 5 HOH F 6 69 69 HOH HOH . 
K 5 HOH F 7 74 74 HOH HOH . 
K 5 HOH F 8 77 77 HOH HOH . 
K 5 HOH F 9 100 100 HOH HOH . 
K 5 HOH F 10 104 104 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . E 3 -20.094 18.988 2.551 1 28.07 ? C1 NAG 1 A 1 
HETATM 2 C C2 NAG . . . E 3 -19.709 18.071 1.379 1 35.32 ? C2 NAG 1 A 1 
HETATM 3 C C3 NAG . . . E 3 -18.434 17.284 1.662 1 36.47 ? C3 NAG 1 A 1 
HETATM 4 C C4 NAG . . . E 3 -17.324 18.244 1.952 1 40.11 ? C4 NAG 1 A 1 
HETATM 5 C C5 NAG . . . E 3 -17.721 19.047 3.145 1 37.56 ? C5 NAG 1 A 1 
HETATM 6 C C6 NAG . . . E 3 -16.562 20.051 3.213 1 40.16 ? C6 NAG 1 A 1 
HETATM 7 C C7 NAG . . . E 3 -21.542 17.135 0.046 1 37.29 ? C7 NAG 1 A 1 
HETATM 8 C C8 NAG . . . E 3 -22.575 15.982 -0.042 1 27.71 ? C8 NAG 1 A 1 
HETATM 9 N N2 NAG . . . E 3 -20.749 17.078 1.111 1 32.63 ? N2 NAG 1 A 1 
HETATM 10 O O3 NAG . . . E 3 -18.06 16.581 0.474 1 36.64 ? O3 NAG 1 A 1 
HETATM 11 O O4 NAG . . . E 3 -16.152 17.497 2.278 1 52.83 ? O4 NAG 1 A 1 
HETATM 12 O O5 NAG . . . E 3 -18.931 19.757 2.868 1 36.05 ? O5 NAG 1 A 1 
HETATM 13 O O6 NAG . . . E 3 -16.802 20.928 4.303 1 55.6 ? O6 NAG 1 A 1 
HETATM 14 O O7 NAG . . . E 3 -21.501 18.012 -0.813 1 34.41 ? O7 NAG 1 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           30 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           14 
#