data_3EJM
#
_model_server_result.job_id            4sQ-9x0ImLi2k-6GmwQSXA 
_model_server_result.datetime_utc      '2024-11-16 21:33:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ejm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    3EJM 
#
_exptl.entry_id    3EJM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3EJM 
_cell.length_a            70.153 
_cell.length_b            70.153 
_cell.length_c            104.937 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3EJM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
? hexameric 6 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H 1 1 
A,B,C,D,E,F,G,H 2 1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 70.153 0 0 
3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 35.0765 60.75428 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C O1B GDP . A GDP 201 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? 
metalc ? metalc2 C O1A GDP . A GDP 201 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc3 D MG MG . A MG 203 1_555 G O HOH . A HOH 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? 
metalc ? metalc4 D MG MG . A MG 203 1_555 G O HOH . A HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? 
metalc ? metalc5 E O1B GDP . B GDP 202 1_555 F MG MG . B MG 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? 
metalc ? metalc6 E O1A GDP . B GDP 202 1_555 F MG MG . B MG 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc7 F MG MG . B MG 204 1_555 H O HOH . B HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? 
metalc ? metalc8 F MG MG . B MG 204 1_555 H O HOH . B HOH 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3EJM 
_atom_sites.fract_transf_matrix[1][1]    0.014255 
_atom_sites.fract_transf_matrix[1][2]    0.00823 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01646 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00953 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GDP A 1 201 201 GDP GDP . 
D 3 MG A 1 203 203 MG MG . 
E 2 GDP B 1 202 202 GDP GDP . 
F 3 MG B 1 204 204 MG MG . 
G 4 HOH A 1 204 204 HOH HOH . 
G 4 HOH A 2 205 205 HOH HOH . 
G 4 HOH A 3 206 206 HOH HOH . 
G 4 HOH A 4 207 207 HOH HOH . 
G 4 HOH A 5 208 208 HOH HOH . 
G 4 HOH A 6 209 209 HOH HOH . 
G 4 HOH A 7 210 210 HOH HOH . 
G 4 HOH A 8 211 211 HOH HOH . 
G 4 HOH A 9 212 212 HOH HOH . 
G 4 HOH A 10 213 213 HOH HOH . 
G 4 HOH A 11 214 214 HOH HOH . 
G 4 HOH A 12 215 215 HOH HOH . 
G 4 HOH A 13 216 216 HOH HOH . 
G 4 HOH A 14 217 217 HOH HOH . 
G 4 HOH A 15 218 218 HOH HOH . 
G 4 HOH A 16 219 219 HOH HOH . 
G 4 HOH A 17 220 220 HOH HOH . 
G 4 HOH A 18 221 221 HOH HOH . 
G 4 HOH A 19 222 222 HOH HOH . 
G 4 HOH A 20 223 223 HOH HOH . 
G 4 HOH A 21 224 224 HOH HOH . 
G 4 HOH A 22 225 225 HOH HOH . 
G 4 HOH A 23 226 226 HOH HOH . 
G 4 HOH A 24 227 227 HOH HOH . 
G 4 HOH A 25 228 228 HOH HOH . 
G 4 HOH A 26 229 229 HOH HOH . 
G 4 HOH A 27 230 230 HOH HOH . 
G 4 HOH A 28 231 231 HOH HOH . 
G 4 HOH A 29 232 232 HOH HOH . 
G 4 HOH A 30 233 233 HOH HOH . 
G 4 HOH A 31 234 234 HOH HOH . 
G 4 HOH A 32 235 235 HOH HOH . 
G 4 HOH A 33 236 236 HOH HOH . 
G 4 HOH A 34 237 237 HOH HOH . 
G 4 HOH A 35 238 238 HOH HOH . 
G 4 HOH A 36 239 239 HOH HOH . 
G 4 HOH A 37 240 240 HOH HOH . 
G 4 HOH A 38 241 241 HOH HOH . 
G 4 HOH A 39 242 242 HOH HOH . 
G 4 HOH A 40 243 243 HOH HOH . 
G 4 HOH A 41 244 244 HOH HOH . 
G 4 HOH A 42 245 245 HOH HOH . 
G 4 HOH A 43 246 246 HOH HOH . 
G 4 HOH A 44 247 247 HOH HOH . 
G 4 HOH A 45 248 248 HOH HOH . 
G 4 HOH A 46 249 249 HOH HOH . 
G 4 HOH A 47 250 250 HOH HOH . 
G 4 HOH A 48 251 251 HOH HOH . 
G 4 HOH A 49 252 252 HOH HOH . 
G 4 HOH A 50 253 253 HOH HOH . 
G 4 HOH A 51 254 254 HOH HOH . 
G 4 HOH A 52 255 255 HOH HOH . 
G 4 HOH A 53 256 256 HOH HOH . 
G 4 HOH A 54 257 257 HOH HOH . 
G 4 HOH A 55 258 258 HOH HOH . 
G 4 HOH A 56 259 259 HOH HOH . 
G 4 HOH A 57 260 260 HOH HOH . 
G 4 HOH A 58 261 261 HOH HOH . 
G 4 HOH A 59 262 262 HOH HOH . 
G 4 HOH A 60 263 263 HOH HOH . 
G 4 HOH A 61 264 264 HOH HOH . 
G 4 HOH A 62 265 265 HOH HOH . 
G 4 HOH A 63 266 266 HOH HOH . 
G 4 HOH A 64 267 267 HOH HOH . 
G 4 HOH A 65 268 268 HOH HOH . 
G 4 HOH A 66 269 269 HOH HOH . 
G 4 HOH A 67 270 270 HOH HOH . 
G 4 HOH A 68 271 271 HOH HOH . 
G 4 HOH A 69 272 272 HOH HOH . 
G 4 HOH A 70 273 273 HOH HOH . 
G 4 HOH A 71 274 274 HOH HOH . 
G 4 HOH A 72 275 275 HOH HOH . 
G 4 HOH A 73 276 276 HOH HOH . 
G 4 HOH A 74 277 277 HOH HOH . 
G 4 HOH A 75 278 278 HOH HOH . 
G 4 HOH A 76 279 279 HOH HOH . 
G 4 HOH A 77 280 280 HOH HOH . 
G 4 HOH A 78 281 281 HOH HOH . 
G 4 HOH A 79 282 282 HOH HOH . 
G 4 HOH A 80 283 283 HOH HOH . 
G 4 HOH A 81 284 284 HOH HOH . 
G 4 HOH A 82 285 285 HOH HOH . 
G 4 HOH A 83 286 286 HOH HOH . 
G 4 HOH A 84 287 287 HOH HOH . 
G 4 HOH A 85 288 288 HOH HOH . 
G 4 HOH A 86 289 289 HOH HOH . 
G 4 HOH A 87 290 290 HOH HOH . 
G 4 HOH A 88 291 291 HOH HOH . 
G 4 HOH A 89 292 292 HOH HOH . 
G 4 HOH A 90 293 293 HOH HOH . 
G 4 HOH A 91 294 294 HOH HOH . 
G 4 HOH A 92 295 295 HOH HOH . 
G 4 HOH A 93 296 296 HOH HOH . 
G 4 HOH A 94 297 297 HOH HOH . 
G 4 HOH A 95 298 298 HOH HOH . 
G 4 HOH A 96 299 299 HOH HOH . 
G 4 HOH A 97 300 300 HOH HOH . 
G 4 HOH A 98 301 301 HOH HOH . 
G 4 HOH A 99 302 302 HOH HOH . 
G 4 HOH A 100 303 303 HOH HOH . 
G 4 HOH A 101 304 304 HOH HOH . 
G 4 HOH A 102 305 305 HOH HOH . 
G 4 HOH A 103 306 306 HOH HOH . 
G 4 HOH A 104 307 307 HOH HOH . 
G 4 HOH A 105 308 308 HOH HOH . 
G 4 HOH A 106 309 309 HOH HOH . 
G 4 HOH A 107 310 310 HOH HOH . 
G 4 HOH A 108 311 311 HOH HOH . 
G 4 HOH A 109 312 312 HOH HOH . 
G 4 HOH A 110 313 313 HOH HOH . 
G 4 HOH A 111 314 314 HOH HOH . 
G 4 HOH A 112 315 315 HOH HOH . 
H 4 HOH B 1 205 205 HOH HOH . 
H 4 HOH B 2 206 206 HOH HOH . 
H 4 HOH B 3 207 207 HOH HOH . 
H 4 HOH B 4 208 208 HOH HOH . 
H 4 HOH B 5 209 209 HOH HOH . 
H 4 HOH B 6 210 210 HOH HOH . 
H 4 HOH B 7 211 211 HOH HOH . 
H 4 HOH B 8 212 212 HOH HOH . 
H 4 HOH B 9 213 213 HOH HOH . 
H 4 HOH B 10 214 214 HOH HOH . 
H 4 HOH B 11 215 215 HOH HOH . 
H 4 HOH B 12 216 216 HOH HOH . 
H 4 HOH B 13 217 217 HOH HOH . 
H 4 HOH B 14 218 218 HOH HOH . 
H 4 HOH B 15 219 219 HOH HOH . 
H 4 HOH B 16 220 220 HOH HOH . 
H 4 HOH B 17 221 221 HOH HOH . 
H 4 HOH B 18 222 222 HOH HOH . 
H 4 HOH B 19 223 223 HOH HOH . 
H 4 HOH B 20 224 224 HOH HOH . 
H 4 HOH B 21 225 225 HOH HOH . 
H 4 HOH B 22 226 226 HOH HOH . 
H 4 HOH B 23 227 227 HOH HOH . 
H 4 HOH B 24 228 228 HOH HOH . 
H 4 HOH B 25 229 229 HOH HOH . 
H 4 HOH B 26 230 230 HOH HOH . 
H 4 HOH B 27 231 231 HOH HOH . 
H 4 HOH B 28 232 232 HOH HOH . 
H 4 HOH B 29 233 233 HOH HOH . 
H 4 HOH B 30 234 234 HOH HOH . 
H 4 HOH B 31 235 235 HOH HOH . 
H 4 HOH B 32 236 236 HOH HOH . 
H 4 HOH B 33 237 237 HOH HOH . 
H 4 HOH B 34 238 238 HOH HOH . 
H 4 HOH B 35 239 239 HOH HOH . 
H 4 HOH B 36 240 240 HOH HOH . 
H 4 HOH B 37 241 241 HOH HOH . 
H 4 HOH B 38 242 242 HOH HOH . 
H 4 HOH B 39 243 243 HOH HOH . 
H 4 HOH B 40 244 244 HOH HOH . 
H 4 HOH B 41 245 245 HOH HOH . 
H 4 HOH B 42 246 246 HOH HOH . 
H 4 HOH B 43 247 247 HOH HOH . 
H 4 HOH B 44 248 248 HOH HOH . 
H 4 HOH B 45 249 249 HOH HOH . 
H 4 HOH B 46 250 250 HOH HOH . 
H 4 HOH B 47 251 251 HOH HOH . 
H 4 HOH B 48 252 252 HOH HOH . 
H 4 HOH B 49 253 253 HOH HOH . 
H 4 HOH B 50 254 254 HOH HOH . 
H 4 HOH B 51 255 255 HOH HOH . 
H 4 HOH B 52 256 256 HOH HOH . 
H 4 HOH B 53 257 257 HOH HOH . 
H 4 HOH B 54 258 258 HOH HOH . 
H 4 HOH B 55 259 259 HOH HOH . 
H 4 HOH B 56 260 260 HOH HOH . 
H 4 HOH B 57 261 261 HOH HOH . 
H 4 HOH B 58 262 262 HOH HOH . 
H 4 HOH B 59 263 263 HOH HOH . 
H 4 HOH B 60 264 264 HOH HOH . 
H 4 HOH B 61 265 265 HOH HOH . 
H 4 HOH B 62 266 266 HOH HOH . 
H 4 HOH B 63 267 267 HOH HOH . 
H 4 HOH B 64 268 268 HOH HOH . 
H 4 HOH B 65 269 269 HOH HOH . 
H 4 HOH B 66 270 270 HOH HOH . 
H 4 HOH B 67 271 271 HOH HOH . 
H 4 HOH B 68 272 272 HOH HOH . 
H 4 HOH B 69 273 273 HOH HOH . 
H 4 HOH B 70 274 274 HOH HOH . 
H 4 HOH B 71 275 275 HOH HOH . 
H 4 HOH B 72 276 276 HOH HOH . 
H 4 HOH B 73 277 277 HOH HOH . 
H 4 HOH B 74 278 278 HOH HOH . 
H 4 HOH B 75 279 279 HOH HOH . 
H 4 HOH B 76 280 280 HOH HOH . 
H 4 HOH B 77 281 281 HOH HOH . 
H 4 HOH B 78 282 282 HOH HOH . 
H 4 HOH B 79 283 283 HOH HOH . 
H 4 HOH B 80 284 284 HOH HOH . 
H 4 HOH B 81 285 285 HOH HOH . 
H 4 HOH B 82 286 286 HOH HOH . 
H 4 HOH B 83 287 287 HOH HOH . 
H 4 HOH B 84 288 288 HOH HOH . 
H 4 HOH B 85 289 289 HOH HOH . 
H 4 HOH B 86 290 290 HOH HOH . 
H 4 HOH B 87 291 291 HOH HOH . 
H 4 HOH B 88 292 292 HOH HOH . 
H 4 HOH B 89 293 293 HOH HOH . 
H 4 HOH B 90 295 295 HOH HOH . 
H 4 HOH B 91 296 296 HOH HOH . 
H 4 HOH B 92 297 297 HOH HOH . 
H 4 HOH B 93 298 298 HOH HOH . 
H 4 HOH B 94 299 299 HOH HOH . 
H 4 HOH B 95 300 300 HOH HOH . 
H 4 HOH B 96 301 301 HOH HOH . 
H 4 HOH B 97 302 302 HOH HOH . 
H 4 HOH B 98 303 303 HOH HOH . 
H 4 HOH B 99 304 304 HOH HOH . 
H 4 HOH B 100 305 305 HOH HOH . 
H 4 HOH B 101 306 306 HOH HOH . 
H 4 HOH B 102 307 307 HOH HOH . 
H 4 HOH B 103 308 308 HOH HOH . 
H 4 HOH B 104 309 309 HOH HOH . 
H 4 HOH B 105 310 310 HOH HOH . 
H 4 HOH B 106 311 311 HOH HOH . 
H 4 HOH B 107 312 312 HOH HOH . 
H 4 HOH B 108 313 313 HOH HOH . 
H 4 HOH B 109 314 314 HOH HOH . 
H 4 HOH B 110 315 315 HOH HOH . 
H 4 HOH B 111 316 316 HOH HOH . 
H 4 HOH B 112 317 317 HOH HOH . 
H 4 HOH B 113 318 318 HOH HOH . 
H 4 HOH B 114 319 319 HOH HOH . 
H 4 HOH B 115 320 320 HOH HOH . 
H 4 HOH B 116 321 321 HOH HOH . 
H 4 HOH B 117 322 322 HOH HOH . 
H 4 HOH B 118 323 323 HOH HOH . 
H 4 HOH B 119 324 324 HOH HOH . 
H 4 HOH B 120 325 325 HOH HOH . 
H 4 HOH B 121 326 326 HOH HOH . 
H 4 HOH B 122 327 327 HOH HOH . 
H 4 HOH B 123 328 328 HOH HOH . 
H 4 HOH B 124 329 329 HOH HOH . 
H 4 HOH B 125 330 330 HOH HOH . 
H 4 HOH B 126 331 331 HOH HOH . 
H 4 HOH B 127 332 332 HOH HOH . 
H 4 HOH B 128 333 333 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               54.536 
_atom_site.Cartn_y               13.464 
_atom_site.Cartn_z               33.364 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        37.48 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           203 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#