data_3EJV # _model_server_result.job_id 0dibbBdvqCIGEoYOLG5ZoQ _model_server_result.datetime_utc '2024-12-26 11:29:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ejv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":203}' # _entry.id 3EJV # _exptl.entry_id 3EJV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3EJV _cell.length_a 79.54 _cell.length_b 79.54 _cell.length_c 79.54 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EJV _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_456 z-1/2,-x+1/2,-y+1 0 0 1 -1 0 0 0 -1 0 -39.77 39.77 79.54 3 'crystal symmetry operation' 12_565 -y+1/2,-z+1,x+1/2 0 -1 0 0 0 -1 1 0 0 39.77 79.54 39.77 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 21 A THR 2 1_555 A N MSE 22 A MSE 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C MSE 22 A MSE 3 1_555 A N ALA 23 A ALA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale3 A C ALA 46 A ALA 27 1_555 A N MSE 47 A MSE 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 47 A MSE 28 1_555 A N ALA 48 A ALA 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale5 A C GLN 85 A GLN 66 1_555 A N MSE 86 A MSE 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale6 A C MSE 86 A MSE 67 1_555 A N MSE 87 A MSE 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 A C MSE 87 A MSE 68 1_555 A N ALA 88 A ALA 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 A C PHE 118 A PHE 99 1_555 A N MSE 119 A MSE 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale9 A C MSE 119 A MSE 100 1_555 A N VAL 120 A VAL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale10 A C ALA 167 A ALA 148 1_555 A N MSE 168 A MSE 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 A C MSE 168 A MSE 149 1_555 A N ARG 169 A ARG 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale12 A C PRO 175 A PRO 156 1_555 A N MSE 176 A MSE 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale13 A C MSE 176 A MSE 157 1_555 A N ALA 177 A ALA 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 3EJV _atom_sites.fract_transf_matrix[1][1] 0.012572 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012572 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012572 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UNL A 1 200 200 UNL UNL . C 3 EDO A 1 201 1 EDO EDO . D 3 EDO A 1 202 2 EDO EDO . E 3 EDO A 1 203 3 EDO EDO . F 3 EDO A 1 204 4 EDO EDO . G 4 PGE A 1 205 5 PGE PGE . H 5 HOH A 1 206 6 HOH HOH . H 5 HOH A 2 207 7 HOH HOH . H 5 HOH A 3 208 8 HOH HOH . H 5 HOH A 4 209 9 HOH HOH . H 5 HOH A 5 210 10 HOH HOH . H 5 HOH A 6 211 11 HOH HOH . H 5 HOH A 7 212 12 HOH HOH . H 5 HOH A 8 213 13 HOH HOH . H 5 HOH A 9 214 14 HOH HOH . H 5 HOH A 10 215 15 HOH HOH . H 5 HOH A 11 216 16 HOH HOH . H 5 HOH A 12 217 17 HOH HOH . H 5 HOH A 13 218 18 HOH HOH . H 5 HOH A 14 219 19 HOH HOH . H 5 HOH A 15 220 20 HOH HOH . H 5 HOH A 16 221 21 HOH HOH . H 5 HOH A 17 222 22 HOH HOH . H 5 HOH A 18 223 23 HOH HOH . H 5 HOH A 19 224 24 HOH HOH . H 5 HOH A 20 225 25 HOH HOH . H 5 HOH A 21 226 26 HOH HOH . H 5 HOH A 22 227 27 HOH HOH . H 5 HOH A 23 228 28 HOH HOH . H 5 HOH A 24 229 29 HOH HOH . H 5 HOH A 25 230 30 HOH HOH . H 5 HOH A 26 231 31 HOH HOH . H 5 HOH A 27 232 32 HOH HOH . H 5 HOH A 28 233 33 HOH HOH . H 5 HOH A 29 234 34 HOH HOH . H 5 HOH A 30 235 35 HOH HOH . H 5 HOH A 31 236 36 HOH HOH . H 5 HOH A 32 237 37 HOH HOH . H 5 HOH A 33 238 38 HOH HOH . H 5 HOH A 34 239 39 HOH HOH . H 5 HOH A 35 240 40 HOH HOH . H 5 HOH A 36 241 41 HOH HOH . H 5 HOH A 37 242 42 HOH HOH . H 5 HOH A 38 243 43 HOH HOH . H 5 HOH A 39 244 44 HOH HOH . H 5 HOH A 40 245 45 HOH HOH . H 5 HOH A 41 246 46 HOH HOH . H 5 HOH A 42 247 47 HOH HOH . H 5 HOH A 43 248 48 HOH HOH . H 5 HOH A 44 249 49 HOH HOH . H 5 HOH A 45 250 50 HOH HOH . H 5 HOH A 46 251 51 HOH HOH . H 5 HOH A 47 252 52 HOH HOH . H 5 HOH A 48 253 53 HOH HOH . H 5 HOH A 49 254 54 HOH HOH . H 5 HOH A 50 255 55 HOH HOH . H 5 HOH A 51 256 56 HOH HOH . H 5 HOH A 52 257 57 HOH HOH . H 5 HOH A 53 258 58 HOH HOH . H 5 HOH A 54 259 59 HOH HOH . H 5 HOH A 55 260 60 HOH HOH . H 5 HOH A 56 261 61 HOH HOH . H 5 HOH A 57 262 62 HOH HOH . H 5 HOH A 58 263 63 HOH HOH . H 5 HOH A 59 264 64 HOH HOH . H 5 HOH A 60 265 65 HOH HOH . H 5 HOH A 61 266 66 HOH HOH . H 5 HOH A 62 267 67 HOH HOH . H 5 HOH A 63 268 68 HOH HOH . H 5 HOH A 64 269 69 HOH HOH . H 5 HOH A 65 270 70 HOH HOH . H 5 HOH A 66 271 71 HOH HOH . H 5 HOH A 67 272 72 HOH HOH . H 5 HOH A 68 273 73 HOH HOH . H 5 HOH A 69 274 74 HOH HOH . H 5 HOH A 70 275 75 HOH HOH . H 5 HOH A 71 276 76 HOH HOH . H 5 HOH A 72 277 77 HOH HOH . H 5 HOH A 73 278 78 HOH HOH . H 5 HOH A 74 279 79 HOH HOH . H 5 HOH A 75 280 80 HOH HOH . H 5 HOH A 76 281 81 HOH HOH . H 5 HOH A 77 282 82 HOH HOH . H 5 HOH A 78 283 83 HOH HOH . H 5 HOH A 79 284 84 HOH HOH . H 5 HOH A 80 285 85 HOH HOH . H 5 HOH A 81 286 86 HOH HOH . H 5 HOH A 82 287 87 HOH HOH . H 5 HOH A 83 288 88 HOH HOH . H 5 HOH A 84 289 89 HOH HOH . H 5 HOH A 85 290 90 HOH HOH . H 5 HOH A 86 291 91 HOH HOH . H 5 HOH A 87 292 92 HOH HOH . H 5 HOH A 88 293 93 HOH HOH . H 5 HOH A 89 294 94 HOH HOH . H 5 HOH A 90 295 95 HOH HOH . H 5 HOH A 91 296 96 HOH HOH . H 5 HOH A 92 297 97 HOH HOH . H 5 HOH A 93 298 98 HOH HOH . H 5 HOH A 94 299 99 HOH HOH . H 5 HOH A 95 300 100 HOH HOH . H 5 HOH A 96 301 101 HOH HOH . H 5 HOH A 97 302 102 HOH HOH . H 5 HOH A 98 303 103 HOH HOH . H 5 HOH A 99 304 104 HOH HOH . H 5 HOH A 100 305 105 HOH HOH . H 5 HOH A 101 306 106 HOH HOH . H 5 HOH A 102 307 107 HOH HOH . H 5 HOH A 103 308 108 HOH HOH . H 5 HOH A 104 309 109 HOH HOH . H 5 HOH A 105 310 110 HOH HOH . H 5 HOH A 106 311 111 HOH HOH . H 5 HOH A 107 312 112 HOH HOH . H 5 HOH A 108 313 113 HOH HOH . H 5 HOH A 109 314 114 HOH HOH . H 5 HOH A 110 315 115 HOH HOH . H 5 HOH A 111 316 116 HOH HOH . H 5 HOH A 112 317 117 HOH HOH . H 5 HOH A 113 318 118 HOH HOH . H 5 HOH A 114 319 119 HOH HOH . H 5 HOH A 115 320 120 HOH HOH . H 5 HOH A 116 321 121 HOH HOH . H 5 HOH A 117 322 122 HOH HOH . H 5 HOH A 118 323 123 HOH HOH . H 5 HOH A 119 324 124 HOH HOH . H 5 HOH A 120 325 125 HOH HOH . H 5 HOH A 121 326 126 HOH HOH . H 5 HOH A 122 327 127 HOH HOH . H 5 HOH A 123 328 128 HOH HOH . H 5 HOH A 124 329 129 HOH HOH . H 5 HOH A 125 330 130 HOH HOH . H 5 HOH A 126 331 131 HOH HOH . H 5 HOH A 127 332 132 HOH HOH . H 5 HOH A 128 333 133 HOH HOH . H 5 HOH A 129 334 134 HOH HOH . H 5 HOH A 130 335 135 HOH HOH . H 5 HOH A 131 336 136 HOH HOH . H 5 HOH A 132 337 137 HOH HOH . H 5 HOH A 133 338 138 HOH HOH . H 5 HOH A 134 339 139 HOH HOH . H 5 HOH A 135 340 140 HOH HOH . H 5 HOH A 136 341 141 HOH HOH . H 5 HOH A 137 342 142 HOH HOH . H 5 HOH A 138 343 143 HOH HOH . H 5 HOH A 139 344 144 HOH HOH . H 5 HOH A 140 345 145 HOH HOH . H 5 HOH A 141 346 146 HOH HOH . H 5 HOH A 142 347 147 HOH HOH . H 5 HOH A 143 348 148 HOH HOH . H 5 HOH A 144 349 149 HOH HOH . H 5 HOH A 145 350 150 HOH HOH . H 5 HOH A 146 351 151 HOH HOH . H 5 HOH A 147 352 152 HOH HOH . H 5 HOH A 148 353 153 HOH HOH . H 5 HOH A 149 354 154 HOH HOH . H 5 HOH A 150 355 155 HOH HOH . H 5 HOH A 151 356 156 HOH HOH . H 5 HOH A 152 357 157 HOH HOH . H 5 HOH A 153 358 158 HOH HOH . H 5 HOH A 154 359 159 HOH HOH . H 5 HOH A 155 360 160 HOH HOH . H 5 HOH A 156 361 161 HOH HOH . H 5 HOH A 157 362 162 HOH HOH . H 5 HOH A 158 363 163 HOH HOH . H 5 HOH A 159 364 164 HOH HOH . H 5 HOH A 160 365 165 HOH HOH . H 5 HOH A 161 366 166 HOH HOH . H 5 HOH A 162 367 167 HOH HOH . H 5 HOH A 163 368 168 HOH HOH . H 5 HOH A 164 369 169 HOH HOH . H 5 HOH A 165 370 170 HOH HOH . H 5 HOH A 166 371 171 HOH HOH . H 5 HOH A 167 372 172 HOH HOH . H 5 HOH A 168 373 173 HOH HOH . H 5 HOH A 169 374 174 HOH HOH . H 5 HOH A 170 375 175 HOH HOH . H 5 HOH A 171 376 176 HOH HOH . H 5 HOH A 172 377 177 HOH HOH . H 5 HOH A 173 378 178 HOH HOH . H 5 HOH A 174 379 179 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . A . E 3 2.974 17.708 34.685 0.4 21.63 ? C1 EDO 203 A 1 HETATM 2 C C1 EDO . B . E 3 2.472 17.197 35.43 0.4 20.75 ? C1 EDO 203 A 1 HETATM 3 O O1 EDO . A . E 3 3.1 17.608 36.103 0.4 21.8 ? O1 EDO 203 A 1 HETATM 4 O O1 EDO . B . E 3 3.578 18.034 35.149 0.4 18.08 ? O1 EDO 203 A 1 HETATM 5 C C2 EDO . A . E 3 2.448 16.405 34.086 0.4 22.3 ? C2 EDO 203 A 1 HETATM 6 C C2 EDO . B . E 3 2.07 16.423 34.181 0.4 21.55 ? C2 EDO 203 A 1 HETATM 7 O O2 EDO . A . E 3 2.194 16.575 32.686 0.4 22.39 ? O2 EDO 203 A 1 HETATM 8 O O2 EDO . B . E 3 0.679 16.631 33.937 0.4 22.34 ? O2 EDO 203 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 671 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 8 #