data_3EK4 # _model_server_result.job_id C8WVAsOrQ4mnOLQ4Vpkhrg _model_server_result.datetime_utc '2024-11-05 00:01:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ek4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":453}' # _entry.id 3EK4 # _exptl.entry_id 3EK4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3EK4 _cell.length_a 60.498 _cell.length_b 117.26 _cell.length_c 68.801 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EK4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 222 A LEU 222 1_555 A N1 CRO 223 A CRO 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale2 A C3 CRO 223 A CRO 224 1_555 A N VAL 224 A VAL 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A OD1 ASP 321 A ASP 323 1_555 B CA CA . A CA 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc2 A OD1 ASP 323 A ASP 325 1_555 B CA CA . A CA 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.167 ? metalc ? metalc3 A OD1 ASP 325 A ASP 327 1_555 B CA CA . A CA 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc4 A O THR 327 A THR 329 1_555 B CA CA . A CA 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc5 A OE1 GLU 332 A GLU 334 1_555 B CA CA . A CA 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? metalc ? metalc6 A OE2 GLU 332 A GLU 334 1_555 B CA CA . A CA 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? metalc ? metalc7 A OD2 ASP 357 A ASP 359 1_555 C CA CA . A CA 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc8 A OD1 ASP 359 A ASP 361 1_555 C CA CA . A CA 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc9 A OD2 ASP 359 A ASP 361 1_555 C CA CA . A CA 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.183 ? metalc ? metalc10 A OD1 ASN 361 A ASN 363 1_555 C CA CA . A CA 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc11 A O THR 363 A THR 365 1_555 C CA CA . A CA 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc12 A OE1 GLU 368 A GLU 370 1_555 C CA CA . A CA 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc13 A OE2 GLU 368 A GLU 370 1_555 C CA CA . A CA 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc14 A OD2 ASP 394 A ASP 396 1_555 D CA CA . A CA 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.982 ? metalc ? metalc15 A OD2 ASP 396 A ASP 398 1_555 D CA CA . A CA 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.826 ? metalc ? metalc16 A OD1 ASN 398 A ASN 400 1_555 D CA CA . A CA 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc17 A O TYR 400 A TYR 402 1_555 D CA CA . A CA 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc18 A OE2 GLU 405 A GLU 407 1_555 D CA CA . A CA 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3EK4 _atom_sites.fract_transf_matrix[1][1] 0.016529 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008528 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014535 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 452 1 CA CA . C 2 CA A 1 453 2 CA CA . D 2 CA A 1 454 3 CA CA . E 3 HOH A 1 455 1 HOH HOH . E 3 HOH A 2 456 2 HOH HOH . E 3 HOH A 3 457 3 HOH HOH . E 3 HOH A 4 458 4 HOH HOH . E 3 HOH A 5 459 5 HOH HOH . E 3 HOH A 6 460 6 HOH HOH . E 3 HOH A 7 461 7 HOH HOH . E 3 HOH A 8 462 8 HOH HOH . E 3 HOH A 9 463 9 HOH HOH . E 3 HOH A 10 464 10 HOH HOH . E 3 HOH A 11 465 11 HOH HOH . E 3 HOH A 12 466 12 HOH HOH . E 3 HOH A 13 467 13 HOH HOH . E 3 HOH A 14 468 14 HOH HOH . E 3 HOH A 15 469 15 HOH HOH . E 3 HOH A 16 470 16 HOH HOH . E 3 HOH A 17 471 17 HOH HOH . E 3 HOH A 18 472 18 HOH HOH . E 3 HOH A 19 473 19 HOH HOH . E 3 HOH A 20 474 20 HOH HOH . E 3 HOH A 21 475 21 HOH HOH . E 3 HOH A 22 476 22 HOH HOH . E 3 HOH A 23 477 23 HOH HOH . E 3 HOH A 24 478 24 HOH HOH . E 3 HOH A 25 479 25 HOH HOH . E 3 HOH A 26 480 26 HOH HOH . E 3 HOH A 27 481 27 HOH HOH . E 3 HOH A 28 482 28 HOH HOH . E 3 HOH A 29 483 29 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 17.644 _atom_site.Cartn_y 43.336 _atom_site.Cartn_z 24.02 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 51.17 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 453 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #