data_3EK7 # _model_server_result.job_id ThGJcHOEs2dY3r8UAkYgsQ _model_server_result.datetime_utc '2024-12-26 12:35:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ek7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":452}' # _entry.id 3EK7 # _exptl.entry_id 3EK7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.48 _cell.angle_gamma 90 _cell.entry_id 3EK7 _cell.length_a 126.131 _cell.length_b 47.31 _cell.length_c 68.94 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EK7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 222 A LEU 222 1_555 A N1 CRO 223 A CRO 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale2 A C3 CRO 223 A CRO 224 1_555 A N VAL 224 A VAL 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? metalc ? metalc1 A OD1 ASP 321 A ASP 323 1_555 B CA CA . A CA 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc2 A OD1 ASP 323 A ASP 325 1_555 B CA CA . A CA 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc3 A OD1 ASP 325 A ASP 327 1_555 B CA CA . A CA 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc4 A O THR 327 A THR 329 1_555 B CA CA . A CA 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc5 A OE1 GLU 332 A GLU 334 1_555 B CA CA . A CA 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc6 A OE2 GLU 332 A GLU 334 1_555 B CA CA . A CA 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc7 A OD2 ASP 357 A ASP 359 1_555 C CA CA . A CA 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc8 A OD1 ASP 359 A ASP 361 1_555 C CA CA . A CA 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc9 A OD1 ASN 361 A ASN 363 1_555 C CA CA . A CA 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc10 A O THR 363 A THR 365 1_555 C CA CA . A CA 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc11 A OE1 GLU 368 A GLU 370 1_555 C CA CA . A CA 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc12 A OE2 GLU 368 A GLU 370 1_555 C CA CA . A CA 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc13 A OD2 ASP 394 A ASP 396 1_555 D CA CA . A CA 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc14 A OD2 ASP 396 A ASP 398 1_555 D CA CA . A CA 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc15 A OD1 ASN 398 A ASN 400 1_555 D CA CA . A CA 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc16 A O TYR 400 A TYR 402 1_555 D CA CA . A CA 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc17 A OE1 GLU 405 A GLU 407 1_555 D CA CA . A CA 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? metalc ? metalc18 A OE2 GLU 405 A GLU 407 1_555 D CA CA . A CA 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc19 A OD1 ASP 430 A ASP 432 1_555 E CA CA . A CA 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc20 A OD2 ASP 432 A ASP 434 1_555 E CA CA . A CA 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc21 A OD1 ASP 434 A ASP 436 1_555 E CA CA . A CA 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc22 A O GLN 436 A GLN 438 1_555 E CA CA . A CA 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc23 A OE1 GLU 441 A GLU 443 1_555 E CA CA . A CA 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc24 A OE2 GLU 441 A GLU 443 1_555 E CA CA . A CA 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc25 B CA CA . A CA 452 1_555 F O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc26 C CA CA . A CA 453 1_555 F O HOH . A HOH 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc27 D CA CA . A CA 454 1_555 F O HOH . A HOH 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc28 E CA CA . A CA 455 1_555 F O HOH . A HOH 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3EK7 _atom_sites.fract_transf_matrix[1][1] 0.007928 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001467 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021137 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014751 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 452 1 CA CA . C 2 CA A 1 453 2 CA CA . D 2 CA A 1 454 3 CA CA . E 2 CA A 1 455 4 CA CA . F 3 HOH A 1 456 1 HOH HOH . F 3 HOH A 2 457 2 HOH HOH . F 3 HOH A 3 458 3 HOH HOH . F 3 HOH A 4 459 4 HOH HOH . F 3 HOH A 5 460 5 HOH HOH . F 3 HOH A 6 461 6 HOH HOH . F 3 HOH A 7 462 7 HOH HOH . F 3 HOH A 8 463 8 HOH HOH . F 3 HOH A 9 464 9 HOH HOH . F 3 HOH A 10 465 10 HOH HOH . F 3 HOH A 11 466 11 HOH HOH . F 3 HOH A 12 467 12 HOH HOH . F 3 HOH A 13 468 13 HOH HOH . F 3 HOH A 14 469 14 HOH HOH . F 3 HOH A 15 470 15 HOH HOH . F 3 HOH A 16 471 16 HOH HOH . F 3 HOH A 17 472 17 HOH HOH . F 3 HOH A 18 473 18 HOH HOH . F 3 HOH A 19 474 19 HOH HOH . F 3 HOH A 20 475 20 HOH HOH . F 3 HOH A 21 476 21 HOH HOH . F 3 HOH A 22 477 22 HOH HOH . F 3 HOH A 23 478 23 HOH HOH . F 3 HOH A 24 479 24 HOH HOH . F 3 HOH A 25 480 25 HOH HOH . F 3 HOH A 26 481 26 HOH HOH . F 3 HOH A 27 482 27 HOH HOH . F 3 HOH A 28 483 28 HOH HOH . F 3 HOH A 29 484 29 HOH HOH . F 3 HOH A 30 485 30 HOH HOH . F 3 HOH A 31 486 31 HOH HOH . F 3 HOH A 32 487 32 HOH HOH . F 3 HOH A 33 488 33 HOH HOH . F 3 HOH A 34 489 34 HOH HOH . F 3 HOH A 35 490 35 HOH HOH . F 3 HOH A 36 491 36 HOH HOH . F 3 HOH A 37 492 37 HOH HOH . F 3 HOH A 38 493 38 HOH HOH . F 3 HOH A 39 494 39 HOH HOH . F 3 HOH A 40 495 40 HOH HOH . F 3 HOH A 41 496 41 HOH HOH . F 3 HOH A 42 497 42 HOH HOH . F 3 HOH A 43 498 43 HOH HOH . F 3 HOH A 44 499 44 HOH HOH . F 3 HOH A 45 500 46 HOH HOH . F 3 HOH A 46 501 47 HOH HOH . F 3 HOH A 47 502 48 HOH HOH . F 3 HOH A 48 503 49 HOH HOH . F 3 HOH A 49 504 50 HOH HOH . F 3 HOH A 50 505 51 HOH HOH . F 3 HOH A 51 506 52 HOH HOH . F 3 HOH A 52 507 53 HOH HOH . F 3 HOH A 53 508 54 HOH HOH . F 3 HOH A 54 509 55 HOH HOH . F 3 HOH A 55 510 56 HOH HOH . F 3 HOH A 56 511 57 HOH HOH . F 3 HOH A 57 512 58 HOH HOH . F 3 HOH A 58 513 59 HOH HOH . F 3 HOH A 59 514 61 HOH HOH . F 3 HOH A 60 515 62 HOH HOH . F 3 HOH A 61 516 63 HOH HOH . F 3 HOH A 62 517 64 HOH HOH . F 3 HOH A 63 518 65 HOH HOH . F 3 HOH A 64 519 66 HOH HOH . F 3 HOH A 65 520 67 HOH HOH . F 3 HOH A 66 521 68 HOH HOH . F 3 HOH A 67 522 69 HOH HOH . F 3 HOH A 68 523 70 HOH HOH . F 3 HOH A 69 524 71 HOH HOH . F 3 HOH A 70 525 72 HOH HOH . F 3 HOH A 71 526 73 HOH HOH . F 3 HOH A 72 527 74 HOH HOH . F 3 HOH A 73 528 75 HOH HOH . F 3 HOH A 74 529 76 HOH HOH . F 3 HOH A 75 530 77 HOH HOH . F 3 HOH A 76 531 78 HOH HOH . F 3 HOH A 77 532 79 HOH HOH . F 3 HOH A 78 533 80 HOH HOH . F 3 HOH A 79 534 81 HOH HOH . F 3 HOH A 80 535 82 HOH HOH . F 3 HOH A 81 536 83 HOH HOH . F 3 HOH A 82 537 84 HOH HOH . F 3 HOH A 83 538 85 HOH HOH . F 3 HOH A 84 539 86 HOH HOH . F 3 HOH A 85 540 87 HOH HOH . F 3 HOH A 86 541 88 HOH HOH . F 3 HOH A 87 542 89 HOH HOH . F 3 HOH A 88 543 90 HOH HOH . F 3 HOH A 89 544 91 HOH HOH . F 3 HOH A 90 545 92 HOH HOH . F 3 HOH A 91 546 93 HOH HOH . F 3 HOH A 92 547 94 HOH HOH . F 3 HOH A 93 548 95 HOH HOH . F 3 HOH A 94 549 96 HOH HOH . F 3 HOH A 95 550 97 HOH HOH . F 3 HOH A 96 551 98 HOH HOH . F 3 HOH A 97 552 99 HOH HOH . F 3 HOH A 98 553 100 HOH HOH . F 3 HOH A 99 554 101 HOH HOH . F 3 HOH A 100 555 102 HOH HOH . F 3 HOH A 101 556 103 HOH HOH . F 3 HOH A 102 557 104 HOH HOH . F 3 HOH A 103 558 105 HOH HOH . F 3 HOH A 104 559 106 HOH HOH . F 3 HOH A 105 560 107 HOH HOH . F 3 HOH A 106 561 108 HOH HOH . F 3 HOH A 107 562 109 HOH HOH . F 3 HOH A 108 563 110 HOH HOH . F 3 HOH A 109 564 111 HOH HOH . F 3 HOH A 110 565 112 HOH HOH . F 3 HOH A 111 566 113 HOH HOH . F 3 HOH A 112 567 114 HOH HOH . F 3 HOH A 113 568 115 HOH HOH . F 3 HOH A 114 569 116 HOH HOH . F 3 HOH A 115 570 117 HOH HOH . F 3 HOH A 116 571 118 HOH HOH . F 3 HOH A 117 572 119 HOH HOH . F 3 HOH A 118 573 120 HOH HOH . F 3 HOH A 119 574 121 HOH HOH . F 3 HOH A 120 575 122 HOH HOH . F 3 HOH A 121 576 123 HOH HOH . F 3 HOH A 122 577 124 HOH HOH . F 3 HOH A 123 578 125 HOH HOH . F 3 HOH A 124 579 126 HOH HOH . F 3 HOH A 125 580 127 HOH HOH . F 3 HOH A 126 581 128 HOH HOH . F 3 HOH A 127 582 129 HOH HOH . F 3 HOH A 128 583 130 HOH HOH . F 3 HOH A 129 584 131 HOH HOH . F 3 HOH A 130 585 132 HOH HOH . F 3 HOH A 131 586 133 HOH HOH . F 3 HOH A 132 587 134 HOH HOH . F 3 HOH A 133 588 135 HOH HOH . F 3 HOH A 134 589 136 HOH HOH . F 3 HOH A 135 590 137 HOH HOH . F 3 HOH A 136 591 138 HOH HOH . F 3 HOH A 137 592 139 HOH HOH . F 3 HOH A 138 593 140 HOH HOH . F 3 HOH A 139 594 141 HOH HOH . F 3 HOH A 140 595 142 HOH HOH . F 3 HOH A 141 596 143 HOH HOH . F 3 HOH A 142 597 144 HOH HOH . F 3 HOH A 143 598 145 HOH HOH . F 3 HOH A 144 599 146 HOH HOH . F 3 HOH A 145 600 147 HOH HOH . F 3 HOH A 146 601 148 HOH HOH . F 3 HOH A 147 602 149 HOH HOH . F 3 HOH A 148 603 150 HOH HOH . F 3 HOH A 149 604 151 HOH HOH . F 3 HOH A 150 605 152 HOH HOH . F 3 HOH A 151 606 153 HOH HOH . F 3 HOH A 152 607 154 HOH HOH . F 3 HOH A 153 608 155 HOH HOH . F 3 HOH A 154 609 156 HOH HOH . F 3 HOH A 155 610 157 HOH HOH . F 3 HOH A 156 611 158 HOH HOH . F 3 HOH A 157 612 159 HOH HOH . F 3 HOH A 158 613 160 HOH HOH . F 3 HOH A 159 614 161 HOH HOH . F 3 HOH A 160 615 162 HOH HOH . F 3 HOH A 161 616 163 HOH HOH . F 3 HOH A 162 617 164 HOH HOH . F 3 HOH A 163 618 165 HOH HOH . F 3 HOH A 164 619 166 HOH HOH . F 3 HOH A 165 620 167 HOH HOH . F 3 HOH A 166 621 168 HOH HOH . F 3 HOH A 167 622 169 HOH HOH . F 3 HOH A 168 623 170 HOH HOH . F 3 HOH A 169 624 171 HOH HOH . F 3 HOH A 170 625 201 HOH HOH . F 3 HOH A 171 626 202 HOH HOH . F 3 HOH A 172 627 203 HOH HOH . F 3 HOH A 173 628 204 HOH HOH . F 3 HOH A 174 629 205 HOH HOH . F 3 HOH A 175 630 206 HOH HOH . F 3 HOH A 176 631 207 HOH HOH . F 3 HOH A 177 632 208 HOH HOH . F 3 HOH A 178 633 210 HOH HOH . F 3 HOH A 179 634 211 HOH HOH . F 3 HOH A 180 635 212 HOH HOH . F 3 HOH A 181 636 213 HOH HOH . F 3 HOH A 182 637 214 HOH HOH . F 3 HOH A 183 638 215 HOH HOH . F 3 HOH A 184 639 216 HOH HOH . F 3 HOH A 185 640 217 HOH HOH . F 3 HOH A 186 641 218 HOH HOH . F 3 HOH A 187 642 219 HOH HOH . F 3 HOH A 188 643 220 HOH HOH . F 3 HOH A 189 644 221 HOH HOH . F 3 HOH A 190 645 222 HOH HOH . F 3 HOH A 191 646 225 HOH HOH . F 3 HOH A 192 647 226 HOH HOH . F 3 HOH A 193 648 227 HOH HOH . F 3 HOH A 194 649 228 HOH HOH . F 3 HOH A 195 650 229 HOH HOH . F 3 HOH A 196 651 230 HOH HOH . F 3 HOH A 197 652 231 HOH HOH . F 3 HOH A 198 653 232 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 13.15 _atom_site.Cartn_y 0.637 _atom_site.Cartn_z -15.127 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 19.45 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 452 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #