data_3EKA # _model_server_result.job_id APy_18vbiSGVhAuG_CoUHg _model_server_result.datetime_utc '2024-11-21 23:32:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3eka # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3EKA # _exptl.entry_id 3EKA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 176.124 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ASCORBIC ACID' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3EKA _cell.length_a 58.502 _cell.length_b 58.502 _cell.length_c 583.54 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EKA _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 58.502 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 29.251 50.664218 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'C6 H8 O6' _chem_comp.formula_weight 176.124 _chem_comp.id ASC _chem_comp.mon_nstd_flag . _chem_comp.name 'ASCORBIC ACID' _chem_comp.type l-saccharide _chem_comp.pdbx_synonyms 'Vitamin C' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 ASC sing 39 n n C1 O1 ASC doub 40 n n C1 O4 ASC sing 41 n n C2 C3 ASC doub 42 n n C2 O2 ASC sing 43 n n C3 C4 ASC sing 44 n n C3 O3 ASC sing 45 n n C4 C5 ASC sing 46 n n C4 O4 ASC sing 47 n n C4 H4 ASC sing 48 n n C5 C6 ASC sing 49 n n C5 O5 ASC sing 50 n n C5 H5 ASC sing 51 n n C6 O6 ASC sing 52 n n C6 H61 ASC sing 53 n n C6 H62 ASC sing 54 n n O2 HO2 ASC sing 55 n n O3 HO3 ASC sing 56 n n O5 HO5 ASC sing 57 n n O6 HO6 ASC sing 58 n n # _atom_sites.entry_id 3EKA _atom_sites.fract_transf_matrix[1][1] 0.017093 _atom_sites.fract_transf_matrix[1][2] 0.009869 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019738 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001714 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ASC A 1 1 1 ASC ASC . C 2 ASC A 1 2 2 ASC ASC . D 2 ASC A 1 3 3 ASC ASC . E 3 HOH A 1 339 1 HOH HOH . E 3 HOH A 2 340 2 HOH HOH . E 3 HOH A 3 341 3 HOH HOH . E 3 HOH A 4 342 6 HOH HOH . E 3 HOH A 5 343 10 HOH HOH . E 3 HOH A 6 344 15 HOH HOH . E 3 HOH A 7 345 16 HOH HOH . E 3 HOH A 8 346 18 HOH HOH . E 3 HOH A 9 347 23 HOH HOH . E 3 HOH A 10 348 24 HOH HOH . E 3 HOH A 11 349 26 HOH HOH . E 3 HOH A 12 350 29 HOH HOH . E 3 HOH A 13 351 30 HOH HOH . E 3 HOH A 14 352 31 HOH HOH . E 3 HOH A 15 353 32 HOH HOH . E 3 HOH A 16 354 34 HOH HOH . E 3 HOH A 17 355 35 HOH HOH . E 3 HOH A 18 356 38 HOH HOH . E 3 HOH A 19 357 41 HOH HOH . E 3 HOH A 20 358 42 HOH HOH . E 3 HOH A 21 359 43 HOH HOH . E 3 HOH A 22 360 44 HOH HOH . E 3 HOH A 23 361 45 HOH HOH . E 3 HOH A 24 362 46 HOH HOH . E 3 HOH A 25 363 47 HOH HOH . E 3 HOH A 26 364 48 HOH HOH . E 3 HOH A 27 365 49 HOH HOH . E 3 HOH A 28 366 50 HOH HOH . E 3 HOH A 29 367 51 HOH HOH . E 3 HOH A 30 368 52 HOH HOH . E 3 HOH A 31 369 53 HOH HOH . E 3 HOH A 32 370 54 HOH HOH . E 3 HOH A 33 371 56 HOH HOH . E 3 HOH A 34 372 58 HOH HOH . E 3 HOH A 35 373 59 HOH HOH . E 3 HOH A 36 374 60 HOH HOH . E 3 HOH A 37 375 61 HOH HOH . E 3 HOH A 38 376 62 HOH HOH . E 3 HOH A 39 377 63 HOH HOH . E 3 HOH A 40 378 64 HOH HOH . E 3 HOH A 41 379 65 HOH HOH . E 3 HOH A 42 380 66 HOH HOH . E 3 HOH A 43 381 67 HOH HOH . E 3 HOH A 44 382 68 HOH HOH . E 3 HOH A 45 383 70 HOH HOH . E 3 HOH A 46 384 71 HOH HOH . E 3 HOH A 47 385 72 HOH HOH . E 3 HOH A 48 386 73 HOH HOH . E 3 HOH A 49 387 74 HOH HOH . E 3 HOH A 50 388 75 HOH HOH . E 3 HOH A 51 389 76 HOH HOH . E 3 HOH A 52 390 77 HOH HOH . E 3 HOH A 53 391 78 HOH HOH . E 3 HOH A 54 392 79 HOH HOH . E 3 HOH A 55 393 80 HOH HOH . E 3 HOH A 56 394 81 HOH HOH . E 3 HOH A 57 395 82 HOH HOH . E 3 HOH A 58 396 83 HOH HOH . E 3 HOH A 59 397 84 HOH HOH . E 3 HOH A 60 398 85 HOH HOH . E 3 HOH A 61 399 86 HOH HOH . E 3 HOH A 62 400 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ASC . . . B 2 16.968 -1.38 37.33 0.5 54.25 ? C1 ASC 1 A 1 HETATM 2 C C2 ASC . . . B 2 16.705 -2.643 36.718 0.5 55.19 ? C2 ASC 1 A 1 HETATM 3 C C3 ASC . . . B 2 15.837 -2.402 35.737 0.5 55.02 ? C3 ASC 1 A 1 HETATM 4 C C4 ASC . . . B 2 15.518 -0.907 35.625 0.5 53.87 ? C4 ASC 1 A 1 HETATM 5 C C5 ASC . . . B 2 14.15 -0.469 36.149 0.5 52.51 ? C5 ASC 1 A 1 HETATM 6 C C6 ASC . . . B 2 14.16 1.074 36.153 0.5 51.11 ? C6 ASC 1 A 1 HETATM 7 O O1 ASC . . . B 2 17.485 -1.255 38.442 0.5 54.26 ? O1 ASC 1 A 1 HETATM 8 O O2 ASC . . . B 2 17.245 -3.794 37.122 0.5 54.28 ? O2 ASC 1 A 1 HETATM 9 O O3 ASC . . . B 2 15.306 -3.333 34.947 0.5 55.12 ? O3 ASC 1 A 1 HETATM 10 O O4 ASC . . . B 2 16.501 -0.268 36.483 0.5 53.8 ? O4 ASC 1 A 1 HETATM 11 O O5 ASC . . . B 2 13.987 -0.989 37.48 0.5 51.68 ? O5 ASC 1 A 1 HETATM 12 O O6 ASC . . . B 2 13.165 1.629 37.363 0.5 49.33 ? O6 ASC 1 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #