data_3EKQ # _model_server_result.job_id PobHwE_VEo6HRS31YP688A _model_server_result.datetime_utc '2024-11-13 06:41:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ekq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":100}' # _entry.id 3EKQ # _exptl.entry_id 3EKQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 670.841 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-N-[(2S,3R)-4-[(2S,3S,4aS,8aS)-3-(tert-butylcarbamoyl)-3,4,4a,5,6,7,8,8a-octahydro-1H-isoquinolin-2-yl]-3-hydroxy-1 -phenyl-butan-2-yl]-2-(quinolin-2-ylcarbonylamino)butanediamide' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3EKQ _cell.length_a 51.164 _cell.length_b 59.291 _cell.length_c 61.389 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EKQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C38 H50 N6 O5' _chem_comp.formula_weight 670.841 _chem_comp.id ROC _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-N-[(2S,3R)-4-[(2S,3S,4aS,8aS)-3-(tert-butylcarbamoyl)-3,4,4a,5,6,7,8,8a-octahydro-1H-isoquinolin-2-yl]-3-hydroxy-1 -phenyl-butan-2-yl]-2-(quinolin-2-ylcarbonylamino)butanediamide' _chem_comp.type peptide-like _chem_comp.pdbx_synonyms 'Fortovase;SAQUINAVIR;RO 31-8959' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C ROC doub 281 n n C C2 ROC sing 282 n n N1 C2 ROC doub 283 n y N1 C8A ROC sing 284 n y C2 C3 ROC sing 285 n y C3 C4 ROC doub 286 n y C3 H3 ROC sing 287 n n C4 C4A ROC sing 288 n y C4 H4 ROC sing 289 n n C4A C5 ROC doub 290 n y C4A C8A ROC sing 291 n y C5 C6 ROC sing 292 n y C5 H5 ROC sing 293 n n C6 C7 ROC doub 294 n y C6 H6 ROC sing 295 n n C7 C8 ROC sing 296 n y C7 H7 ROC sing 297 n n C8 C8A ROC doub 298 n y C8 H8 ROC sing 299 n n N CA ROC sing 300 n n N H ROC sing 301 n n CA C1 ROC sing 302 n n CA CB ROC sing 303 n n CA HA ROC sing 304 n n C1 O1 ROC doub 305 n n CB CG ROC sing 306 n n CB HB2 ROC sing 307 n n CB HB3 ROC sing 308 n n CG OD1 ROC doub 309 n n CG ND2 ROC sing 310 n n ND2 HD21 ROC sing 311 n n ND2 HD22 ROC sing 312 n n C9 O2 ROC sing 313 n n C9 CA1 ROC sing 314 n n C9 HC ROC sing 315 n n O2 HO ROC sing 316 n n CA1 N2 ROC sing 317 n n CA1 CB1 ROC sing 318 n n CA1 HA1 ROC sing 319 n n N2 H1 ROC sing 320 n n CB1 CG1 ROC sing 321 n n CB1 HB21 ROC sing 322 n n CB1 HB31 ROC sing 323 n n CG1 CD1 ROC doub 324 n y CG1 CD2 ROC sing 325 n y CD1 CE1 ROC sing 326 n y CD1 HD1 ROC sing 327 n n CD2 CE2 ROC doub 328 n y CD2 HD2 ROC sing 329 n n CE1 CZ ROC doub 330 n y CE1 HE1 ROC sing 331 n n CE2 CZ ROC sing 332 n y CE2 HE2 ROC sing 333 n n CZ HZ ROC sing 334 n n N11 CM ROC sing 335 n n N11 C21 ROC sing 336 n n N11 C81 ROC sing 337 n n CM HM1 ROC sing 338 n n CM HM2 ROC sing 339 n n C21 CC ROC sing 340 n n C21 C31 ROC sing 341 n n C21 H2 ROC sing 342 n n CC O3 ROC doub 343 n n C31 C3A ROC sing 344 n n C31 H31 ROC sing 345 n n C31 H32 ROC sing 346 n n C3A C41 ROC sing 347 n n C3A C7A ROC sing 348 n n C3A H3A ROC sing 349 n n C41 C51 ROC sing 350 n n C41 H41 ROC sing 351 n n C41 H42 ROC sing 352 n n C51 C61 ROC sing 353 n n C51 H51 ROC sing 354 n n C51 H52 ROC sing 355 n n C61 C71 ROC sing 356 n n C61 H61 ROC sing 357 n n C61 H62 ROC sing 358 n n C71 C7A ROC sing 359 n n C71 H71 ROC sing 360 n n C71 H72 ROC sing 361 n n C7A C81 ROC sing 362 n n C7A H7A ROC sing 363 n n C81 H81 ROC sing 364 n n C81 H82 ROC sing 365 n n N3 CD ROC sing 366 n n N3 HN1 ROC sing 367 n n CD C11 ROC sing 368 n n CD C22 ROC sing 369 n n CD C32 ROC sing 370 n n C11 H11 ROC sing 371 n n C11 H12 ROC sing 372 n n C11 H13 ROC sing 373 n n C22 H21 ROC sing 374 n n C22 H22 ROC sing 375 n n C22 H23 ROC sing 376 n n C32 H311 ROC sing 377 n n C32 H321 ROC sing 378 n n C32 H33 ROC sing 379 n n C N ROC sing 380 n n C1 N2 ROC sing 381 n n C9 CM ROC sing 382 n n CC N3 ROC sing 383 n n # _atom_sites.entry_id 3EKQ _atom_sites.fract_transf_matrix[1][1] 0.019545 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016866 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01629 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ROC A 1 100 1 ROC QNC . D 3 PO4 A 1 502 502 PO4 PO4 . E 3 PO4 B 1 501 501 PO4 PO4 . F 4 HOH A 1 503 2 HOH WAT . F 4 HOH A 2 504 3 HOH WAT . F 4 HOH A 3 505 4 HOH WAT . F 4 HOH A 4 506 6 HOH WAT . F 4 HOH A 5 507 7 HOH WAT . F 4 HOH A 6 508 8 HOH WAT . F 4 HOH A 7 509 9 HOH WAT . F 4 HOH A 8 510 11 HOH WAT . F 4 HOH A 9 511 15 HOH WAT . F 4 HOH A 10 512 20 HOH WAT . F 4 HOH A 11 513 22 HOH WAT . F 4 HOH A 12 514 23 HOH WAT . F 4 HOH A 13 515 24 HOH WAT . F 4 HOH A 14 516 25 HOH WAT . F 4 HOH A 15 517 26 HOH WAT . F 4 HOH A 16 518 27 HOH WAT . F 4 HOH A 17 519 28 HOH WAT . F 4 HOH A 18 520 29 HOH WAT . F 4 HOH A 19 521 30 HOH WAT . F 4 HOH A 20 522 31 HOH WAT . F 4 HOH A 21 523 32 HOH WAT . F 4 HOH A 22 524 33 HOH WAT . F 4 HOH A 23 525 34 HOH WAT . F 4 HOH A 24 526 35 HOH WAT . F 4 HOH A 25 527 36 HOH WAT . F 4 HOH A 26 528 37 HOH WAT . F 4 HOH A 27 529 39 HOH WAT . F 4 HOH A 28 530 41 HOH WAT . F 4 HOH A 29 531 42 HOH WAT . F 4 HOH A 30 532 51 HOH WAT . F 4 HOH A 31 533 52 HOH WAT . F 4 HOH A 32 534 53 HOH WAT . F 4 HOH A 33 535 54 HOH WAT . F 4 HOH A 34 536 55 HOH WAT . F 4 HOH A 35 537 56 HOH WAT . F 4 HOH A 36 538 71 HOH WAT . F 4 HOH A 37 539 72 HOH WAT . F 4 HOH A 38 540 73 HOH WAT . F 4 HOH A 39 541 74 HOH WAT . F 4 HOH A 40 542 75 HOH WAT . F 4 HOH A 41 543 76 HOH WAT . F 4 HOH A 42 544 77 HOH WAT . F 4 HOH A 43 545 78 HOH WAT . F 4 HOH A 44 546 81 HOH WAT . F 4 HOH A 45 547 83 HOH WAT . F 4 HOH A 46 548 84 HOH WAT . F 4 HOH A 47 549 10 HOH WAT . G 4 HOH B 1 506 5 HOH WAT . G 4 HOH B 2 507 46 HOH WAT . G 4 HOH B 3 508 79 HOH WAT . G 4 HOH B 4 509 80 HOH WAT . G 4 HOH B 5 510 82 HOH WAT . G 4 HOH B 6 511 85 HOH WAT . G 4 HOH B 7 512 1 HOH WAT . G 4 HOH B 8 513 12 HOH WAT . G 4 HOH B 9 514 13 HOH WAT . G 4 HOH B 10 515 14 HOH WAT . G 4 HOH B 11 516 16 HOH WAT . G 4 HOH B 12 517 17 HOH WAT . G 4 HOH B 13 518 18 HOH WAT . G 4 HOH B 14 519 19 HOH WAT . G 4 HOH B 15 520 38 HOH WAT . G 4 HOH B 16 521 58 HOH WAT . G 4 HOH B 17 522 60 HOH WAT . G 4 HOH B 18 523 61 HOH WAT . G 4 HOH B 19 524 62 HOH WAT . G 4 HOH B 20 525 63 HOH WAT . G 4 HOH B 21 526 64 HOH WAT . G 4 HOH B 22 527 65 HOH WAT . G 4 HOH B 23 528 66 HOH WAT . G 4 HOH B 24 529 67 HOH WAT . G 4 HOH B 25 530 68 HOH WAT . G 4 HOH B 26 531 69 HOH WAT . G 4 HOH B 27 532 70 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ROC . . . C 2 21.345 3.992 20.302 1 25.03 ? C ROC 100 A 1 HETATM 2 O O ROC . . . C 2 21.677 4.942 19.597 1 24.3 ? O ROC 100 A 1 HETATM 3 N N1 ROC . . . C 2 20.057 3.185 22.314 1 26.62 ? N1 ROC 100 A 1 HETATM 4 C C2 ROC . . . C 2 20.45 4.194 21.5 1 25.5 ? C2 ROC 100 A 1 HETATM 5 C C3 ROC . . . C 2 20.022 5.489 21.775 1 27.09 ? C3 ROC 100 A 1 HETATM 6 C C4 ROC . . . C 2 19.203 5.74 22.871 1 28.19 ? C4 ROC 100 A 1 HETATM 7 C C5 ROC . . . C 2 17.996 4.917 24.793 1 27.01 ? C5 ROC 100 A 1 HETATM 8 C C6 ROC . . . C 2 17.614 3.859 25.612 1 27.06 ? C6 ROC 100 A 1 HETATM 9 C C7 ROC . . . C 2 18.061 2.571 25.329 1 26.6 ? C7 ROC 100 A 1 HETATM 10 C C8 ROC . . . C 2 18.875 2.348 24.219 1 27.89 ? C8 ROC 100 A 1 HETATM 11 C C4A ROC . . . C 2 18.816 4.687 23.691 1 27.47 ? C4A ROC 100 A 1 HETATM 12 C C8A ROC . . . C 2 19.261 3.403 23.392 1 26.67 ? C8A ROC 100 A 1 HETATM 13 N N ROC . . . C 2 21.856 2.841 19.878 1 23.48 ? N ROC 100 A 1 HETATM 14 C CA ROC . . . C 2 22.565 1.833 19.129 1 23.4 ? CA ROC 100 A 1 HETATM 15 C C1 ROC . . . C 2 21.638 0.764 18.638 1 22.73 ? C1 ROC 100 A 1 HETATM 16 O O1 ROC . . . C 2 21.599 -0.306 19.213 1 22.04 ? O1 ROC 100 A 1 HETATM 17 C CB ROC . . . C 2 23.839 1.411 19.86 1 21.86 ? CB ROC 100 A 1 HETATM 18 C CG ROC . . . C 2 24.676 2.669 20.03 1 20.37 ? CG ROC 100 A 1 HETATM 19 O OD1 ROC . . . C 2 25.043 3.312 19.066 1 20.74 ? OD1 ROC 100 A 1 HETATM 20 N ND2 ROC . . . C 2 24.954 3.052 21.269 1 18.94 ? ND2 ROC 100 A 1 HETATM 21 C C9 ROC . . . C 2 20.336 0.047 15.38 1 20.89 ? C9 ROC 100 A 1 HETATM 22 O O2 ROC . . . C 2 20.389 1.146 14.611 1 18.86 ? O2 ROC 100 A 1 HETATM 23 C CA1 ROC . . . C 2 19.994 0.243 16.833 1 21.79 ? CA1 ROC 100 A 1 HETATM 24 N N2 ROC . . . C 2 20.932 1.106 17.539 1 22.35 ? N2 ROC 100 A 1 HETATM 25 C CB1 ROC . . . C 2 18.543 0.768 16.885 1 21.37 ? CB1 ROC 100 A 1 HETATM 26 C CG1 ROC . . . C 2 18.094 1.292 18.227 1 19.77 ? CG1 ROC 100 A 1 HETATM 27 C CD1 ROC . . . C 2 17.876 0.439 19.305 1 19.37 ? CD1 ROC 100 A 1 HETATM 28 C CD2 ROC . . . C 2 17.88 2.66 18.382 1 20.65 ? CD2 ROC 100 A 1 HETATM 29 C CE1 ROC . . . C 2 17.445 0.953 20.528 1 17.31 ? CE1 ROC 100 A 1 HETATM 30 C CE2 ROC . . . C 2 17.455 3.177 19.603 1 18.41 ? CE2 ROC 100 A 1 HETATM 31 C CZ ROC . . . C 2 17.235 2.318 20.677 1 18.48 ? CZ ROC 100 A 1 HETATM 32 N N11 ROC . . . C 2 20.604 -2.324 15.036 1 23.11 ? N11 ROC 100 A 1 HETATM 33 C CM ROC . . . C 2 19.903 -1.101 14.802 1 19.54 ? CM ROC 100 A 1 HETATM 34 C C21 ROC . . . C 2 19.779 -3.523 14.815 1 22.1 ? C21 ROC 100 A 1 HETATM 35 C CC ROC . . . C 2 18.527 -3.516 15.643 1 21.9 ? CC ROC 100 A 1 HETATM 36 O O3 ROC . . . C 2 18.608 -3.218 16.835 1 21.77 ? O3 ROC 100 A 1 HETATM 37 C C31 ROC . . . C 2 20.58 -4.78 15.178 1 21.63 ? C31 ROC 100 A 1 HETATM 38 C C3A ROC . . . C 2 21.85 -4.881 14.339 1 20.48 ? C3A ROC 100 A 1 HETATM 39 C C41 ROC . . . C 2 22.674 -6.124 14.687 1 20.65 ? C41 ROC 100 A 1 HETATM 40 C C51 ROC . . . C 2 23.371 -6.008 16.041 1 20.63 ? C51 ROC 100 A 1 HETATM 41 C C61 ROC . . . C 2 24.209 -4.74 16.136 1 21.84 ? C61 ROC 100 A 1 HETATM 42 C C71 ROC . . . C 2 23.344 -3.514 15.849 1 22.41 ? C71 ROC 100 A 1 HETATM 43 C C7A ROC . . . C 2 22.685 -3.613 14.476 1 20.69 ? C7A ROC 100 A 1 HETATM 44 C C81 ROC . . . C 2 21.839 -2.381 14.214 1 21.36 ? C81 ROC 100 A 1 HETATM 45 N N3 ROC . . . C 2 17.429 -3.905 14.958 1 21.04 ? N3 ROC 100 A 1 HETATM 46 C CD ROC . . . C 2 16.067 -4.065 15.458 1 19.34 ? CD ROC 100 A 1 HETATM 47 C C11 ROC . . . C 2 15.222 -4.662 14.333 1 19.85 ? C11 ROC 100 A 1 HETATM 48 C C22 ROC . . . C 2 16.046 -4.999 16.671 1 20.83 ? C22 ROC 100 A 1 HETATM 49 C C32 ROC . . . C 2 15.497 -2.692 15.813 1 21.35 ? C32 ROC 100 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 49 #