data_3EKV # _model_server_result.job_id 5kxAs_ujomEhB3LFNHPBSg _model_server_result.datetime_utc '2024-11-27 18:25:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ekv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":200}' # _entry.id 3EKV # _exptl.entry_id 3EKV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 505.627 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '{3-[(4-AMINO-BENZENESULFONYL)-ISOBUTYL-AMINO]-1-BENZYL-2-HYDROXY-PROPYL}-CARBAMIC ACID TETRAHYDRO-FURAN-3-YL ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3EKV _cell.length_a 50.723 _cell.length_b 57.401 _cell.length_c 61.741 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EKV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H35 N3 O6 S' _chem_comp.formula_weight 505.627 _chem_comp.id 478 _chem_comp.mon_nstd_flag . _chem_comp.name '{3-[(4-AMINO-BENZENESULFONYL)-ISOBUTYL-AMINO]-1-BENZYL-2-HYDROXY-PROPYL}-CARBAMIC ACID TETRAHYDRO-FURAN-3-YL ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Amprenavir # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C4 478 sing 1 n n C1 O6 478 sing 2 n n C1 H11A 478 sing 3 n n C1 H12A 478 sing 4 n n C2 C4 478 sing 5 n n C2 C25 478 sing 6 n n C2 H21A 478 sing 7 n n C2 H22A 478 sing 8 n n C3 N1 478 sing 9 n n C3 O1 478 sing 10 n n C3 O2 478 doub 11 n n C4 O1 478 sing 12 n n C4 H4 478 sing 13 n n C5 C6 478 sing 14 n n C5 C7 478 sing 15 n n C5 N1 478 sing 16 n n C5 H5 478 sing 17 n n C6 C14 478 sing 18 n n C6 O3 478 sing 19 n n C6 H6 478 sing 20 n n C7 C8 478 sing 21 n n C7 H71 478 sing 22 n n C7 H72 478 sing 23 n n C8 C9 478 doub 24 n y C8 C10 478 sing 25 n y C9 C11 478 sing 26 n y C9 H9 478 sing 27 n n C10 C12 478 doub 28 n y C10 H10 478 sing 29 n n C11 C13 478 doub 30 n y C11 H11 478 sing 31 n n C12 C13 478 sing 32 n y C12 H12 478 sing 33 n n C13 H13 478 sing 34 n n C14 N2 478 sing 35 n n C14 H141 478 sing 36 n n C14 H142 478 sing 37 n n C15 C16 478 sing 38 n n C15 N2 478 sing 39 n n C15 H151 478 sing 40 n n C15 H152 478 sing 41 n n C16 C23 478 sing 42 n n C16 C24 478 sing 43 n n C16 H16 478 sing 44 n n C17 C18 478 doub 45 n y C17 C22 478 sing 46 n y C17 S1 478 sing 47 n n C18 C19 478 sing 48 n y C18 H18 478 sing 49 n n C19 C20 478 doub 50 n y C19 H19 478 sing 51 n n C20 C21 478 sing 52 n y C20 N3 478 sing 53 n n C21 C22 478 doub 54 n y C21 H21 478 sing 55 n n C22 H22 478 sing 56 n n C23 H231 478 sing 57 n n C23 H232 478 sing 58 n n C23 H233 478 sing 59 n n C24 H241 478 sing 60 n n C24 H242 478 sing 61 n n C24 H243 478 sing 62 n n C25 O6 478 sing 63 n n C25 H251 478 sing 64 n n C25 H252 478 sing 65 n n N1 HN1 478 sing 66 n n N2 S1 478 sing 67 n n N3 HN31 478 sing 68 n n N3 HN32 478 sing 69 n n O3 HO3 478 sing 70 n n O4 S1 478 doub 71 n n O5 S1 478 doub 72 n n # _atom_sites.entry_id 3EKV _atom_sites.fract_transf_matrix[1][1] 0.019715 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017421 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016197 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 478 A 1 200 200 478 478 . D 3 ACT A 1 501 501 ACT ACT . E 3 ACT A 1 502 502 ACT ACT . F 3 ACT A 1 503 503 ACT ACT . G 3 ACT A 1 504 504 ACT ACT . H 4 HOH A 1 103 36 HOH WAT . H 4 HOH A 2 104 37 HOH WAT . H 4 HOH A 3 107 40 HOH WAT . H 4 HOH A 4 108 41 HOH WAT . H 4 HOH A 5 109 42 HOH WAT . H 4 HOH A 6 112 58 HOH WAT . H 4 HOH A 7 114 60 HOH WAT . H 4 HOH A 8 118 64 HOH WAT . H 4 HOH A 9 122 68 HOH WAT . H 4 HOH A 10 125 79 HOH WAT . H 4 HOH A 11 129 83 HOH WAT . H 4 HOH A 12 130 84 HOH WAT . H 4 HOH A 13 131 85 HOH WAT . H 4 HOH A 14 147 116 HOH WAT . H 4 HOH A 15 505 1 HOH WAT . H 4 HOH A 16 507 3 HOH WAT . H 4 HOH A 17 509 5 HOH WAT . H 4 HOH A 18 510 6 HOH WAT . H 4 HOH A 19 511 7 HOH WAT . H 4 HOH A 20 512 8 HOH WAT . H 4 HOH A 21 515 11 HOH WAT . H 4 HOH A 22 516 12 HOH WAT . H 4 HOH A 23 517 13 HOH WAT . H 4 HOH A 24 519 15 HOH WAT . H 4 HOH A 25 520 16 HOH WAT . H 4 HOH A 26 521 17 HOH WAT . H 4 HOH A 27 523 19 HOH WAT . H 4 HOH A 28 524 20 HOH WAT . H 4 HOH A 29 525 21 HOH WAT . H 4 HOH A 30 526 22 HOH WAT . H 4 HOH A 31 529 25 HOH WAT . H 4 HOH A 32 530 26 HOH WAT . H 4 HOH A 33 531 27 HOH WAT . H 4 HOH A 34 534 30 HOH WAT . H 4 HOH A 35 537 44 HOH WAT . H 4 HOH A 36 538 45 HOH WAT . H 4 HOH A 37 543 50 HOH WAT . H 4 HOH A 38 545 52 HOH WAT . H 4 HOH A 39 546 53 HOH WAT . H 4 HOH A 40 548 55 HOH WAT . H 4 HOH A 41 550 69 HOH WAT . H 4 HOH A 42 552 71 HOH WAT . H 4 HOH A 43 553 72 HOH WAT . H 4 HOH A 44 554 73 HOH WAT . H 4 HOH A 45 556 75 HOH WAT . H 4 HOH A 46 558 86 HOH WAT . H 4 HOH A 47 559 87 HOH WAT . H 4 HOH A 48 566 102 HOH WAT . H 4 HOH A 49 567 103 HOH WAT . H 4 HOH A 50 568 104 HOH WAT . H 4 HOH A 51 569 105 HOH WAT . H 4 HOH A 52 570 106 HOH WAT . H 4 HOH A 53 571 107 HOH WAT . H 4 HOH A 54 572 108 HOH WAT . H 4 HOH A 55 573 118 HOH WAT . H 4 HOH A 56 574 119 HOH WAT . H 4 HOH A 57 575 120 HOH WAT . H 4 HOH A 58 576 121 HOH WAT . H 4 HOH A 59 577 122 HOH WAT . H 4 HOH A 60 578 123 HOH WAT . H 4 HOH A 61 579 124 HOH WAT . I 4 HOH B 1 100 33 HOH WAT . I 4 HOH B 2 101 34 HOH WAT . I 4 HOH B 3 102 35 HOH WAT . I 4 HOH B 4 105 38 HOH WAT . I 4 HOH B 5 106 39 HOH WAT . I 4 HOH B 6 110 43 HOH WAT . I 4 HOH B 7 111 57 HOH WAT . I 4 HOH B 8 113 59 HOH WAT . I 4 HOH B 9 115 61 HOH WAT . I 4 HOH B 10 116 62 HOH WAT . I 4 HOH B 11 117 63 HOH WAT . I 4 HOH B 12 119 65 HOH WAT . I 4 HOH B 13 120 66 HOH WAT . I 4 HOH B 14 121 67 HOH WAT . I 4 HOH B 15 123 77 HOH WAT . I 4 HOH B 16 124 78 HOH WAT . I 4 HOH B 17 126 80 HOH WAT . I 4 HOH B 18 127 81 HOH WAT . I 4 HOH B 19 128 82 HOH WAT . I 4 HOH B 20 132 94 HOH WAT . I 4 HOH B 21 133 95 HOH WAT . I 4 HOH B 22 134 96 HOH WAT . I 4 HOH B 23 135 97 HOH WAT . I 4 HOH B 24 136 98 HOH WAT . I 4 HOH B 25 137 99 HOH WAT . I 4 HOH B 26 138 100 HOH WAT . I 4 HOH B 27 139 101 HOH WAT . I 4 HOH B 28 140 109 HOH WAT . I 4 HOH B 29 141 110 HOH WAT . I 4 HOH B 30 142 111 HOH WAT . I 4 HOH B 31 143 112 HOH WAT . I 4 HOH B 32 144 113 HOH WAT . I 4 HOH B 33 145 114 HOH WAT . I 4 HOH B 34 146 115 HOH WAT . I 4 HOH B 35 148 117 HOH WAT . I 4 HOH B 36 506 2 HOH WAT . I 4 HOH B 37 508 4 HOH WAT . I 4 HOH B 38 513 9 HOH WAT . I 4 HOH B 39 514 10 HOH WAT . I 4 HOH B 40 518 14 HOH WAT . I 4 HOH B 41 522 18 HOH WAT . I 4 HOH B 42 527 23 HOH WAT . I 4 HOH B 43 528 24 HOH WAT . I 4 HOH B 44 532 28 HOH WAT . I 4 HOH B 45 533 29 HOH WAT . I 4 HOH B 46 535 31 HOH WAT . I 4 HOH B 47 536 32 HOH WAT . I 4 HOH B 48 539 46 HOH WAT . I 4 HOH B 49 540 47 HOH WAT . I 4 HOH B 50 541 48 HOH WAT . I 4 HOH B 51 542 49 HOH WAT . I 4 HOH B 52 544 51 HOH WAT . I 4 HOH B 53 547 54 HOH WAT . I 4 HOH B 54 549 56 HOH WAT . I 4 HOH B 55 551 70 HOH WAT . I 4 HOH B 56 555 74 HOH WAT . I 4 HOH B 57 557 76 HOH WAT . I 4 HOH B 58 560 88 HOH WAT . I 4 HOH B 59 561 89 HOH WAT . I 4 HOH B 60 562 90 HOH WAT . I 4 HOH B 61 563 91 HOH WAT . I 4 HOH B 62 564 92 HOH WAT . I 4 HOH B 63 565 93 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 478 . . . C 2 23.4 25.87 10.783 1 19.69 ? C1 478 200 A 1 HETATM 2 C C2 478 . . . C 2 24.452 27.783 11.781 1 19.24 ? C2 478 200 A 1 HETATM 3 C C3 478 . . . C 2 21.44 28.274 12.734 1 16.61 ? C3 478 200 A 1 HETATM 4 C C4 478 . . . C 2 23.12 27.282 11.262 1 18.99 ? C4 478 200 A 1 HETATM 5 C C5 478 . . . C 2 19.587 28.807 14.258 1 16.66 ? C5 478 200 A 1 HETATM 6 C C6 478 . . . C 2 19.969 29.194 15.681 1 16.68 ? C6 478 200 A 1 HETATM 7 C C7 478 . . . C 2 18.276 28.036 14.106 1 16.92 ? C7 478 200 A 1 HETATM 8 C C8 478 . . . C 2 18.045 27.652 12.66 1 16.41 ? C8 478 200 A 1 HETATM 9 C C9 478 . . . C 2 18.424 26.395 12.182 1 17.73 ? C9 478 200 A 1 HETATM 10 C C10 478 . . . C 2 17.457 28.558 11.789 1 17.05 ? C10 478 200 A 1 HETATM 11 C C11 478 . . . C 2 18.232 26.065 10.841 1 16.93 ? C11 478 200 A 1 HETATM 12 C C12 478 . . . C 2 17.264 28.228 10.452 1 17.03 ? C12 478 200 A 1 HETATM 13 C C13 478 . . . C 2 17.64 26.973 9.976 1 16.49 ? C13 478 200 A 1 HETATM 14 C C14 478 . . . C 2 19.038 30.254 16.252 1 15.56 ? C14 478 200 A 1 HETATM 15 C C15 478 . . . C 2 20.102 32.452 16.468 1 17.61 ? C15 478 200 A 1 HETATM 16 C C16 478 . . . C 2 21.613 32.201 16.428 1 18.34 ? C16 478 200 A 1 HETATM 17 C C17 478 . . . C 2 17.106 33.012 15.711 1 18.46 ? C17 478 200 A 1 HETATM 18 C C18 478 . . . C 2 16.072 32.335 16.365 1 17.84 ? C18 478 200 A 1 HETATM 19 C C19 478 . . . C 2 15.176 32.977 17.21 1 17.81 ? C19 478 200 A 1 HETATM 20 C C20 478 . . . C 2 15.281 34.352 17.399 1 17.3 ? C20 478 200 A 1 HETATM 21 C C21 478 . . . C 2 16.284 35.051 16.74 1 17.16 ? C21 478 200 A 1 HETATM 22 C C22 478 . . . C 2 17.186 34.381 15.907 1 16.72 ? C22 478 200 A 1 HETATM 23 C C23 478 . . . C 2 22.252 32.243 15.042 1 20.05 ? C23 478 200 A 1 HETATM 24 C C24 478 . . . C 2 22.324 33.254 17.274 1 17.24 ? C24 478 200 A 1 HETATM 25 C C25 478 . . . C 2 25.287 26.525 11.982 1 19.21 ? C25 478 200 A 1 HETATM 26 N N1 478 . . . C 2 20.652 27.961 13.76 1 17.08 ? N1 478 200 A 1 HETATM 27 N N2 478 . . . C 2 19.369 31.527 15.582 1 18.53 ? N2 478 200 A 1 HETATM 28 N N3 478 . . . C 2 14.4 34.981 18.211 1 18.59 ? N3 478 200 A 1 HETATM 29 O O1 478 . . . C 2 22.246 27.14 12.373 1 19.36 ? O1 478 200 A 1 HETATM 30 O O2 478 . . . C 2 21.499 29.346 12.136 1 18.75 ? O2 478 200 A 1 HETATM 31 O O3 478 . . . C 2 19.958 28.036 16.528 1 15.29 ? O3 478 200 A 1 HETATM 32 O O4 478 . . . C 2 17.421 31.175 14.066 1 17.73 ? O4 478 200 A 1 HETATM 33 O O5 478 . . . C 2 18.715 33.092 13.792 1 18.91 ? O5 478 200 A 1 HETATM 34 O O6 478 . . . C 2 24.448 25.418 11.638 1 18.91 ? O6 478 200 A 1 HETATM 35 S S1 478 . . . C 2 18.135 32.196 14.772 1 18.81 ? S1 478 200 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 35 #