data_3EKW # _model_server_result.job_id Z8cbhl3WqbCKKwAuY8UBhA _model_server_result.datetime_utc '2024-11-13 07:30:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ekw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":503}' # _entry.id 3EKW # _exptl.entry_id 3EKW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3EKW _cell.length_a 51.245 _cell.length_b 58.483 _cell.length_c 61.326 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EKW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 365 n n P O2 PO4 sing 366 n n P O3 PO4 sing 367 n n P O4 PO4 sing 368 n n # _atom_sites.entry_id 3EKW _atom_sites.fract_transf_matrix[1][1] 0.019514 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017099 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016306 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 505 505 PO4 PO4 . D 3 DR7 B 1 100 1 DR7 DR7 . E 2 PO4 B 1 502 502 PO4 PO4 . F 2 PO4 B 1 503 503 PO4 PO4 . G 4 HOH A 1 506 1 HOH WAT . G 4 HOH A 2 507 2 HOH WAT . G 4 HOH A 3 508 3 HOH WAT . G 4 HOH A 4 509 4 HOH WAT . G 4 HOH A 5 510 23 HOH WAT . G 4 HOH A 6 511 24 HOH WAT . G 4 HOH A 7 512 25 HOH WAT . G 4 HOH A 8 513 26 HOH WAT . G 4 HOH A 9 514 27 HOH WAT . G 4 HOH A 10 515 29 HOH WAT . G 4 HOH A 11 516 30 HOH WAT . G 4 HOH A 12 517 31 HOH WAT . G 4 HOH A 13 518 32 HOH WAT . G 4 HOH A 14 519 33 HOH WAT . G 4 HOH A 15 520 34 HOH WAT . G 4 HOH A 16 521 35 HOH WAT . G 4 HOH A 17 522 36 HOH WAT . G 4 HOH A 18 523 39 HOH WAT . G 4 HOH A 19 524 42 HOH WAT . G 4 HOH A 20 525 43 HOH WAT . G 4 HOH A 21 526 44 HOH WAT . G 4 HOH A 22 527 45 HOH WAT . G 4 HOH A 23 528 46 HOH WAT . G 4 HOH A 24 529 47 HOH WAT . G 4 HOH A 25 530 48 HOH WAT . G 4 HOH A 26 531 53 HOH WAT . G 4 HOH A 27 532 55 HOH WAT . G 4 HOH A 28 533 59 HOH WAT . G 4 HOH A 29 534 60 HOH WAT . G 4 HOH A 30 535 69 HOH WAT . G 4 HOH A 31 536 72 HOH WAT . G 4 HOH A 32 537 74 HOH WAT . G 4 HOH A 33 538 75 HOH WAT . G 4 HOH A 34 539 76 HOH WAT . G 4 HOH A 35 540 100 HOH WAT . G 4 HOH A 36 541 101 HOH WAT . G 4 HOH A 37 542 103 HOH WAT . G 4 HOH A 38 543 104 HOH WAT . G 4 HOH A 39 544 108 HOH WAT . G 4 HOH A 40 545 109 HOH WAT . G 4 HOH A 41 546 110 HOH WAT . G 4 HOH A 42 547 113 HOH WAT . G 4 HOH A 43 548 120 HOH WAT . G 4 HOH A 44 549 122 HOH WAT . G 4 HOH A 45 550 123 HOH WAT . G 4 HOH A 46 551 124 HOH WAT . G 4 HOH A 47 552 127 HOH WAT . G 4 HOH A 48 553 128 HOH WAT . G 4 HOH A 49 554 130 HOH WAT . G 4 HOH A 50 555 134 HOH WAT . G 4 HOH A 51 556 135 HOH WAT . G 4 HOH A 52 557 138 HOH WAT . G 4 HOH A 53 558 139 HOH WAT . G 4 HOH A 54 559 140 HOH WAT . G 4 HOH A 55 560 141 HOH WAT . G 4 HOH A 56 561 146 HOH WAT . G 4 HOH A 57 562 151 HOH WAT . G 4 HOH A 58 563 152 HOH WAT . G 4 HOH A 59 564 156 HOH WAT . G 4 HOH A 60 565 7 HOH WAT . G 4 HOH A 61 566 14 HOH WAT . G 4 HOH A 62 567 18 HOH WAT . G 4 HOH A 63 568 19 HOH WAT . G 4 HOH A 64 569 20 HOH WAT . G 4 HOH A 65 570 64 HOH WAT . G 4 HOH A 66 571 65 HOH WAT . G 4 HOH A 67 572 67 HOH WAT . G 4 HOH A 68 573 77 HOH WAT . G 4 HOH A 69 574 78 HOH WAT . G 4 HOH A 70 575 80 HOH WAT . G 4 HOH A 71 576 81 HOH WAT . G 4 HOH A 72 577 89 HOH WAT . G 4 HOH A 73 578 91 HOH WAT . G 4 HOH A 74 579 96 HOH WAT . G 4 HOH A 75 580 99 HOH WAT . H 4 HOH B 1 510 21 HOH WAT . H 4 HOH B 2 511 22 HOH WAT . H 4 HOH B 3 512 37 HOH WAT . H 4 HOH B 4 513 38 HOH WAT . H 4 HOH B 5 514 40 HOH WAT . H 4 HOH B 6 515 41 HOH WAT . H 4 HOH B 7 516 49 HOH WAT . H 4 HOH B 8 517 50 HOH WAT . H 4 HOH B 9 518 51 HOH WAT . H 4 HOH B 10 519 52 HOH WAT . H 4 HOH B 11 520 54 HOH WAT . H 4 HOH B 12 521 56 HOH WAT . H 4 HOH B 13 522 57 HOH WAT . H 4 HOH B 14 523 58 HOH WAT . H 4 HOH B 15 524 61 HOH WAT . H 4 HOH B 16 525 70 HOH WAT . H 4 HOH B 17 526 71 HOH WAT . H 4 HOH B 18 527 73 HOH WAT . H 4 HOH B 19 528 6 HOH WAT . H 4 HOH B 20 529 8 HOH WAT . H 4 HOH B 21 530 9 HOH WAT . H 4 HOH B 22 531 10 HOH WAT . H 4 HOH B 23 532 11 HOH WAT . H 4 HOH B 24 533 12 HOH WAT . H 4 HOH B 25 534 13 HOH WAT . H 4 HOH B 26 535 15 HOH WAT . H 4 HOH B 27 536 16 HOH WAT . H 4 HOH B 28 537 17 HOH WAT . H 4 HOH B 29 538 63 HOH WAT . H 4 HOH B 30 539 68 HOH WAT . H 4 HOH B 31 540 79 HOH WAT . H 4 HOH B 32 541 82 HOH WAT . H 4 HOH B 33 542 83 HOH WAT . H 4 HOH B 34 543 84 HOH WAT . H 4 HOH B 35 544 85 HOH WAT . H 4 HOH B 36 545 87 HOH WAT . H 4 HOH B 37 546 88 HOH WAT . H 4 HOH B 38 547 90 HOH WAT . H 4 HOH B 39 548 92 HOH WAT . H 4 HOH B 40 549 93 HOH WAT . H 4 HOH B 41 550 94 HOH WAT . H 4 HOH B 42 551 97 HOH WAT . H 4 HOH B 43 552 98 HOH WAT . H 4 HOH B 44 553 102 HOH WAT . H 4 HOH B 45 554 105 HOH WAT . H 4 HOH B 46 555 106 HOH WAT . H 4 HOH B 47 556 107 HOH WAT . H 4 HOH B 48 557 111 HOH WAT . H 4 HOH B 49 558 115 HOH WAT . H 4 HOH B 50 559 117 HOH WAT . H 4 HOH B 51 560 118 HOH WAT . H 4 HOH B 52 561 119 HOH WAT . H 4 HOH B 53 562 121 HOH WAT . H 4 HOH B 54 563 125 HOH WAT . H 4 HOH B 55 564 126 HOH WAT . H 4 HOH B 56 565 129 HOH WAT . H 4 HOH B 57 566 131 HOH WAT . H 4 HOH B 58 567 132 HOH WAT . H 4 HOH B 59 568 136 HOH WAT . H 4 HOH B 60 569 137 HOH WAT . H 4 HOH B 61 570 142 HOH WAT . H 4 HOH B 62 571 143 HOH WAT . H 4 HOH B 63 572 144 HOH WAT . H 4 HOH B 64 573 147 HOH WAT . H 4 HOH B 65 574 153 HOH WAT . H 4 HOH B 66 575 154 HOH WAT . H 4 HOH B 67 576 155 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . F 2 12.258 17.631 -1.316 1 82.3 ? P PO4 503 B 1 HETATM 2 O O1 PO4 . . . F 2 12.211 18.345 -2.643 1 81.9 ? O1 PO4 503 B 1 HETATM 3 O O2 PO4 . . . F 2 13.626 17.833 -0.708 1 82.51 ? O2 PO4 503 B 1 HETATM 4 O O3 PO4 . . . F 2 11.196 18.187 -0.394 1 82.28 ? O3 PO4 503 B 1 HETATM 5 O O4 PO4 . . . F 2 12.008 16.156 -1.528 1 82.42 ? O4 PO4 503 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 228 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #