data_3EKX # _model_server_result.job_id XlyxFqdR-dBK2D7ct_xlmg _model_server_result.datetime_utc '2024-11-24 21:47:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ekx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 3EKX # _exptl.entry_id 3EKX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 567.782 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[2-HYDROXY-3-(3-HYDROXY-2-METHYL-BENZOYLAMINO)-4-PHENYL SULFANYL-BUTYL]-DECAHYDRO-ISOQUINOLINE-3-CARBOXYLIC ACID TERT-BUTYLAMIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3EKX _cell.length_a 50.924 _cell.length_b 57.848 _cell.length_c 61.572 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EKX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C32 H45 N3 O4 S' _chem_comp.formula_weight 567.782 _chem_comp.id 1UN _chem_comp.mon_nstd_flag . _chem_comp.name '2-[2-HYDROXY-3-(3-HYDROXY-2-METHYL-BENZOYLAMINO)-4-PHENYL SULFANYL-BUTYL]-DECAHYDRO-ISOQUINOLINE-3-CARBOXYLIC ACID TERT-BUTYLAMIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'NELFINAVIR MESYLATE AG1343' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 1UN sing 1 n n C1 C6 1UN sing 2 n n C1 C10 1UN sing 3 n n C1 H1 1UN sing 4 n n C2 C3 1UN sing 5 n n C2 C9 1UN sing 6 n n C2 H2 1UN sing 7 n n C3 C4 1UN sing 8 n n C3 H31A 1UN sing 9 n n C3 H32A 1UN sing 10 n n C4 C5 1UN sing 11 n n C4 H41 1UN sing 12 n n C4 H42 1UN sing 13 n n C5 C6 1UN sing 14 n n C5 H51 1UN sing 15 n n C5 H52 1UN sing 16 n n C6 H61 1UN sing 17 n n C6 H62 1UN sing 18 n n N7 C8 1UN sing 19 n n N7 C10 1UN sing 20 n n N7 C18 1UN sing 21 n n C8 C9 1UN sing 22 n n C8 C11 1UN sing 23 n n C8 H8 1UN sing 24 n n C9 H91 1UN sing 25 n n C9 H92 1UN sing 26 n n C10 H101 1UN sing 27 n n C10 H102 1UN sing 28 n n C11 N12 1UN sing 29 n n C11 O17 1UN doub 30 n n N12 C13 1UN sing 31 n n N12 HNC 1UN sing 32 n n C13 C14 1UN sing 33 n n C13 C15 1UN sing 34 n n C13 C16 1UN sing 35 n n C14 H141 1UN sing 36 n n C14 H142 1UN sing 37 n n C14 H143 1UN sing 38 n n C15 H151 1UN sing 39 n n C15 H152 1UN sing 40 n n C15 H153 1UN sing 41 n n C16 H161 1UN sing 42 n n C16 H162 1UN sing 43 n n C16 H163 1UN sing 44 n n C18 C19 1UN sing 45 n n C18 H181 1UN sing 46 n n C18 H182 1UN sing 47 n n C19 C20 1UN sing 48 n n C19 O21 1UN sing 49 n n C19 H19 1UN sing 50 n n C20 N22 1UN sing 51 n n C20 C23 1UN sing 52 n n C20 H20 1UN sing 53 n n O21 HOL 1UN sing 54 n n N22 C24 1UN sing 55 n n N22 HNM 1UN sing 56 n n C23 S74 1UN sing 57 n n C23 H231 1UN sing 58 n n C23 H232 1UN sing 59 n n C24 O25 1UN doub 60 n n C24 C29 1UN sing 61 n n C29 C30 1UN doub 62 n y C29 C34 1UN sing 63 n y C30 C31 1UN sing 64 n y C30 H30 1UN sing 65 n n C31 C32 1UN doub 66 n y C31 H31 1UN sing 67 n n C32 C33 1UN sing 68 n y C32 H32 1UN sing 69 n n C33 C34 1UN doub 70 n y C33 O38 1UN sing 71 n n C34 C39 1UN sing 72 n n O38 HO 1UN sing 73 n n C39 H391 1UN sing 74 n n C39 H392 1UN sing 75 n n C39 H393 1UN sing 76 n n S74 C77 1UN sing 77 n n C77 C78 1UN doub 78 n y C77 C82 1UN sing 79 n y C78 C79 1UN sing 80 n y C78 H78 1UN sing 81 n n C79 C80 1UN doub 82 n y C79 H79 1UN sing 83 n n C80 C81 1UN sing 84 n y C80 H80 1UN sing 85 n n C81 C82 1UN doub 86 n y C81 H81 1UN sing 87 n n C82 H82 1UN sing 88 n n # _atom_sites.entry_id 3EKX _atom_sites.fract_transf_matrix[1][1] 0.019637 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017287 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016241 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 1UN B 1 201 201 1UN 1UN . D 3 ACT B 1 506 506 ACT ACT . E 4 HOH A 1 102 3 HOH WAT . E 4 HOH A 2 103 4 HOH WAT . E 4 HOH A 3 104 5 HOH WAT . E 4 HOH A 4 105 11 HOH WAT . E 4 HOH A 5 107 13 HOH WAT . E 4 HOH A 6 109 15 HOH WAT . E 4 HOH A 7 111 17 HOH WAT . E 4 HOH A 8 112 18 HOH WAT . E 4 HOH A 9 118 47 HOH WAT . E 4 HOH A 10 120 49 HOH WAT . E 4 HOH A 11 123 52 HOH WAT . E 4 HOH A 12 124 53 HOH WAT . E 4 HOH A 13 125 54 HOH WAT . E 4 HOH A 14 126 55 HOH WAT . E 4 HOH A 15 127 56 HOH WAT . E 4 HOH A 16 128 57 HOH WAT . E 4 HOH A 17 129 58 HOH WAT . E 4 HOH A 18 130 59 HOH WAT . E 4 HOH A 19 134 63 HOH WAT . E 4 HOH A 20 136 65 HOH WAT . E 4 HOH A 21 137 66 HOH WAT . E 4 HOH A 22 138 67 HOH WAT . E 4 HOH A 23 139 68 HOH WAT . E 4 HOH A 24 140 77 HOH WAT . E 4 HOH A 25 142 79 HOH WAT . E 4 HOH A 26 143 80 HOH WAT . E 4 HOH A 27 144 81 HOH WAT . E 4 HOH A 28 145 82 HOH WAT . E 4 HOH A 29 148 85 HOH WAT . E 4 HOH A 30 150 87 HOH WAT . E 4 HOH A 31 151 88 HOH WAT . E 4 HOH A 32 152 89 HOH WAT . E 4 HOH A 33 153 90 HOH WAT . E 4 HOH A 34 154 91 HOH WAT . E 4 HOH A 35 155 92 HOH WAT . E 4 HOH A 36 157 100 HOH WAT . E 4 HOH A 37 159 102 HOH WAT . E 4 HOH A 38 160 103 HOH WAT . E 4 HOH A 39 161 104 HOH WAT . E 4 HOH A 40 162 105 HOH WAT . E 4 HOH A 41 163 106 HOH WAT . E 4 HOH A 42 164 107 HOH WAT . E 4 HOH A 43 509 8 HOH WAT . E 4 HOH A 44 510 9 HOH WAT . E 4 HOH A 45 514 23 HOH WAT . E 4 HOH A 46 515 24 HOH WAT . E 4 HOH A 47 518 27 HOH WAT . E 4 HOH A 48 520 29 HOH WAT . E 4 HOH A 49 522 31 HOH WAT . E 4 HOH A 50 527 36 HOH WAT . E 4 HOH A 51 528 37 HOH WAT . E 4 HOH A 52 530 39 HOH WAT . E 4 HOH A 53 532 41 HOH WAT . E 4 HOH A 54 542 76 HOH WAT . E 4 HOH A 55 544 95 HOH WAT . E 4 HOH A 56 547 98 HOH WAT . E 4 HOH A 57 548 99 HOH WAT . E 4 HOH A 58 549 108 HOH WAT . F 4 HOH B 1 100 1 HOH WAT . F 4 HOH B 2 101 2 HOH WAT . F 4 HOH B 3 106 12 HOH WAT . F 4 HOH B 4 108 14 HOH WAT . F 4 HOH B 5 110 16 HOH WAT . F 4 HOH B 6 113 19 HOH WAT . F 4 HOH B 7 114 20 HOH WAT . F 4 HOH B 8 115 44 HOH WAT . F 4 HOH B 9 116 45 HOH WAT . F 4 HOH B 10 117 46 HOH WAT . F 4 HOH B 11 119 48 HOH WAT . F 4 HOH B 12 121 50 HOH WAT . F 4 HOH B 13 122 51 HOH WAT . F 4 HOH B 14 131 60 HOH WAT . F 4 HOH B 15 132 61 HOH WAT . F 4 HOH B 16 133 62 HOH WAT . F 4 HOH B 17 135 64 HOH WAT . F 4 HOH B 18 141 78 HOH WAT . F 4 HOH B 19 146 83 HOH WAT . F 4 HOH B 20 147 84 HOH WAT . F 4 HOH B 21 149 86 HOH WAT . F 4 HOH B 22 156 93 HOH WAT . F 4 HOH B 23 158 101 HOH WAT . F 4 HOH B 24 507 6 HOH WAT . F 4 HOH B 25 508 7 HOH WAT . F 4 HOH B 26 511 10 HOH WAT . F 4 HOH B 27 512 21 HOH WAT . F 4 HOH B 28 513 22 HOH WAT . F 4 HOH B 29 516 25 HOH WAT . F 4 HOH B 30 517 26 HOH WAT . F 4 HOH B 31 519 28 HOH WAT . F 4 HOH B 32 521 30 HOH WAT . F 4 HOH B 33 523 32 HOH WAT . F 4 HOH B 34 524 33 HOH WAT . F 4 HOH B 35 525 34 HOH WAT . F 4 HOH B 36 526 35 HOH WAT . F 4 HOH B 37 529 38 HOH WAT . F 4 HOH B 38 531 40 HOH WAT . F 4 HOH B 39 533 42 HOH WAT . F 4 HOH B 40 534 43 HOH WAT . F 4 HOH B 41 535 69 HOH WAT . F 4 HOH B 42 536 70 HOH WAT . F 4 HOH B 43 537 71 HOH WAT . F 4 HOH B 44 538 72 HOH WAT . F 4 HOH B 45 539 73 HOH WAT . F 4 HOH B 46 540 74 HOH WAT . F 4 HOH B 47 541 75 HOH WAT . F 4 HOH B 48 543 94 HOH WAT . F 4 HOH B 49 545 96 HOH WAT . F 4 HOH B 50 546 97 HOH WAT . F 4 HOH B 51 550 109 HOH WAT . F 4 HOH B 52 551 110 HOH WAT . F 4 HOH B 53 552 111 HOH WAT . F 4 HOH B 54 553 112 HOH WAT . F 4 HOH B 55 554 113 HOH WAT . F 4 HOH B 56 555 114 HOH WAT . F 4 HOH B 57 556 115 HOH WAT . F 4 HOH B 58 557 116 HOH WAT . F 4 HOH B 59 558 117 HOH WAT . F 4 HOH B 60 559 118 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 1UN . . . C 2 17.652 27.449 12.799 1 37.1 ? C1 1UN 201 B 1 HETATM 2 C C2 1UN . . . C 2 18.374 26.811 11.621 1 37.42 ? C2 1UN 201 B 1 HETATM 3 C C3 1UN . . . C 2 17.542 26.75 10.345 1 38.49 ? C3 1UN 201 B 1 HETATM 4 C C4 1UN . . . C 2 16.888 28.099 10.083 1 38.11 ? C4 1UN 201 B 1 HETATM 5 C C5 1UN . . . C 2 16.166 28.586 11.331 1 38.7 ? C5 1UN 201 B 1 HETATM 6 C C6 1UN . . . C 2 17.124 28.836 12.494 1 33.65 ? C6 1UN 201 B 1 HETATM 7 N N7 1UN . . . C 2 19.7 28.322 13.727 1 38.53 ? N7 1UN 201 B 1 HETATM 8 C C8 1UN . . . C 2 20.465 27.644 12.689 1 36.94 ? C8 1UN 201 B 1 HETATM 9 C C9 1UN . . . C 2 19.663 27.58 11.387 1 37.82 ? C9 1UN 201 B 1 HETATM 10 C C10 1UN . . . C 2 18.519 27.519 14.044 1 37.76 ? C10 1UN 201 B 1 HETATM 11 C C11 1UN . . . C 2 21.71 28.377 12.321 1 34.55 ? C11 1UN 201 B 1 HETATM 12 N N12 1UN . . . C 2 22.742 27.555 12.137 1 34.18 ? N12 1UN 201 B 1 HETATM 13 C C13 1UN . . . C 2 24.063 27.918 11.675 1 34.34 ? C13 1UN 201 B 1 HETATM 14 C C14 1UN . . . C 2 24.692 28.754 12.789 1 35.33 ? C14 1UN 201 B 1 HETATM 15 C C15 1UN . . . C 2 23.961 28.678 10.35 1 36.85 ? C15 1UN 201 B 1 HETATM 16 C C16 1UN . . . C 2 24.863 26.63 11.448 1 34.02 ? C16 1UN 201 B 1 HETATM 17 O O17 1UN . . . C 2 21.681 29.593 12.185 1 32.16 ? O17 1UN 201 B 1 HETATM 18 C C18 1UN . . . C 2 20.427 28.349 14.983 1 39.83 ? C18 1UN 201 B 1 HETATM 19 C C19 1UN . . . C 2 19.936 29.535 15.793 1 39.7 ? C19 1UN 201 B 1 HETATM 20 C C20 1UN . . . C 2 20.599 30.846 15.391 1 41.17 ? C20 1UN 201 B 1 HETATM 21 O O21 1UN . . . C 2 20.218 29.192 17.133 1 40.78 ? O21 1UN 201 B 1 HETATM 22 N N22 1UN . . . C 2 19.883 31.916 16.047 1 37.9 ? N22 1UN 201 B 1 HETATM 23 C C23 1UN . . . C 2 22.074 31.006 15.749 1 42.17 ? C23 1UN 201 B 1 HETATM 24 C C24 1UN . . . C 2 18.896 32.595 15.47 1 36 ? C24 1UN 201 B 1 HETATM 25 O O25 1UN . . . C 2 18.562 32.485 14.305 1 31.92 ? O25 1UN 201 B 1 HETATM 26 C C29 1UN . . . C 2 18.17 33.55 16.36 1 35.15 ? C29 1UN 201 B 1 HETATM 27 C C30 1UN . . . C 2 18.9 34.427 17.164 1 36.58 ? C30 1UN 201 B 1 HETATM 28 C C31 1UN . . . C 2 18.281 35.33 18.026 1 35.65 ? C31 1UN 201 B 1 HETATM 29 C C32 1UN . . . C 2 16.896 35.393 18.1 1 36.54 ? C32 1UN 201 B 1 HETATM 30 C C33 1UN . . . C 2 16.101 34.547 17.331 1 35.67 ? C33 1UN 201 B 1 HETATM 31 C C34 1UN . . . C 2 16.696 33.56 16.406 1 35.88 ? C34 1UN 201 B 1 HETATM 32 O O38 1UN . . . C 2 14.786 34.583 17.403 1 36.45 ? O38 1UN 201 B 1 HETATM 33 C C39 1UN . . . C 2 15.793 32.667 15.591 1 36.49 ? C39 1UN 201 B 1 HETATM 34 S S74 1UN . . . C 2 22.767 32.328 14.801 1 44.22 ? S74 1UN 201 B 1 HETATM 35 C C77 1UN . . . C 2 22.652 33.787 15.649 1 44.93 ? C77 1UN 201 B 1 HETATM 36 C C78 1UN . . . C 2 22.472 34.943 14.901 1 43.8 ? C78 1UN 201 B 1 HETATM 37 C C79 1UN . . . C 2 22.36 36.167 15.541 1 44.29 ? C79 1UN 201 B 1 HETATM 38 C C80 1UN . . . C 2 22.449 36.238 16.925 1 44.29 ? C80 1UN 201 B 1 HETATM 39 C C81 1UN . . . C 2 22.634 35.08 17.67 1 44.38 ? C81 1UN 201 B 1 HETATM 40 C C82 1UN . . . C 2 22.735 33.847 17.037 1 44.48 ? C82 1UN 201 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 222 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 40 #