data_3EL3
#
_model_server_result.job_id            DFMBS2TEVMWmFZ4FDIzyyA 
_model_server_result.datetime_utc      '2025-01-15 02:42:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3el3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":500}' 
#
_entry.id    3EL3 
#
_exptl.entry_id    3EL3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3EL3 
_cell.length_a            107.548 
_cell.length_b            107.548 
_cell.length_c            141.648 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3EL3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E 1 1 
B,F,G,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 410 A CYS 410 1_555 C FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? 
metalc ? metalc2 B SG CYS 410 B CYS 410 1_555 F FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 170 n n 
CHA C4D HEM doub 171 n n 
CHA HHA HEM sing 172 n n 
CHB C4A HEM sing 173 n n 
CHB C1B HEM doub 174 n n 
CHB HHB HEM sing 175 n n 
CHC C4B HEM sing 176 n n 
CHC C1C HEM doub 177 n n 
CHC HHC HEM sing 178 n n 
CHD C4C HEM doub 179 n n 
CHD C1D HEM sing 180 n n 
CHD HHD HEM sing 181 n n 
C1A C2A HEM doub 182 n y 
C1A NA HEM sing 183 n y 
C2A C3A HEM sing 184 n y 
C2A CAA HEM sing 185 n n 
C3A C4A HEM doub 186 n y 
C3A CMA HEM sing 187 n n 
C4A NA HEM sing 188 n y 
CMA HMA HEM sing 189 n n 
CMA HMAA HEM sing 190 n n 
CMA HMAB HEM sing 191 n n 
CAA CBA HEM sing 192 n n 
CAA HAA HEM sing 193 n n 
CAA HAAA HEM sing 194 n n 
CBA CGA HEM sing 195 n n 
CBA HBA HEM sing 196 n n 
CBA HBAA HEM sing 197 n n 
CGA O1A HEM doub 198 n n 
CGA O2A HEM sing 199 n n 
C1B C2B HEM sing 200 n n 
C1B NB HEM sing 201 n n 
C2B C3B HEM doub 202 n n 
C2B CMB HEM sing 203 n n 
C3B C4B HEM sing 204 n n 
C3B CAB HEM sing 205 n n 
C4B NB HEM doub 206 n n 
CMB HMB HEM sing 207 n n 
CMB HMBA HEM sing 208 n n 
CMB HMBB HEM sing 209 n n 
CAB CBB HEM doub 210 n n 
CAB HAB HEM sing 211 n n 
CBB HBB HEM sing 212 n n 
CBB HBBA HEM sing 213 n n 
C1C C2C HEM sing 214 n y 
C1C NC HEM sing 215 n y 
C2C C3C HEM doub 216 n y 
C2C CMC HEM sing 217 n n 
C3C C4C HEM sing 218 n y 
C3C CAC HEM sing 219 n n 
C4C NC HEM sing 220 n y 
CMC HMC HEM sing 221 n n 
CMC HMCA HEM sing 222 n n 
CMC HMCB HEM sing 223 n n 
CAC CBC HEM doub 224 n n 
CAC HAC HEM sing 225 n n 
CBC HBC HEM sing 226 n n 
CBC HBCA HEM sing 227 n n 
C1D C2D HEM sing 228 n n 
C1D ND HEM doub 229 n n 
C2D C3D HEM doub 230 n n 
C2D CMD HEM sing 231 n n 
C3D C4D HEM sing 232 n n 
C3D CAD HEM sing 233 n n 
C4D ND HEM sing 234 n n 
CMD HMD HEM sing 235 n n 
CMD HMDA HEM sing 236 n n 
CMD HMDB HEM sing 237 n n 
CAD CBD HEM sing 238 n n 
CAD HAD HEM sing 239 n n 
CAD HADA HEM sing 240 n n 
CBD CGD HEM sing 241 n n 
CBD HBD HEM sing 242 n n 
CBD HBDA HEM sing 243 n n 
CGD O1D HEM doub 244 n n 
CGD O2D HEM sing 245 n n 
O2A H2A HEM sing 246 n n 
O2D H2D HEM sing 247 n n 
FE NA HEM sing 248 n n 
FE NB HEM sing 249 n n 
FE NC HEM sing 250 n n 
FE ND HEM sing 251 n n 
#
_atom_sites.entry_id                     3EL3 
_atom_sites.fract_transf_matrix[1][1]    0.009298 
_atom_sites.fract_transf_matrix[1][2]    0.005368 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010737 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00706 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 500 500 HEM HEM . 
D 3 EL3 A 1 501 501 EL3 DRG . 
E 3 EL3 A 1 502 502 EL3 DRG . 
F 2 HEM B 1 500 500 HEM HEM . 
G 3 EL3 B 1 501 501 EL3 DRG . 
H 3 EL3 B 1 502 502 EL3 DRG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . F 2 -33.014 3.686 17.914 1 59.28 ? CHA HEM 500 B 1 
HETATM 2 C CHB HEM . . . F 2 -35.287 -0.449 17.214 1 58.12 ? CHB HEM 500 B 1 
HETATM 3 C CHC HEM . . . F 2 -31.255 -2.89 18.156 1 58.31 ? CHC HEM 500 B 1 
HETATM 4 C CHD HEM . . . F 2 -28.955 1.303 18.806 1 58.45 ? CHD HEM 500 B 1 
HETATM 5 C C1A HEM . . . F 2 -33.992 2.794 17.641 1 59.86 ? C1A HEM 500 B 1 
HETATM 6 C C2A HEM . . . F 2 -35.345 3.144 17.298 1 60.87 ? C2A HEM 500 B 1 
HETATM 7 C C3A HEM . . . F 2 -36.002 1.973 17.087 1 59.96 ? C3A HEM 500 B 1 
HETATM 8 C C4A HEM . . . F 2 -35.059 0.891 17.311 1 59.39 ? C4A HEM 500 B 1 
HETATM 9 C CMA HEM . . . F 2 -37.476 1.741 16.693 1 59.47 ? CMA HEM 500 B 1 
HETATM 10 C CAA HEM . . . F 2 -35.811 4.626 17.231 1 63.4 ? CAA HEM 500 B 1 
HETATM 11 C CBA HEM . . . F 2 -36.956 4.959 16.289 1 67.13 ? CBA HEM 500 B 1 
HETATM 12 C CGA HEM . . . F 2 -37.473 6.383 16.477 1 69.45 ? CGA HEM 500 B 1 
HETATM 13 O O1A HEM . . . F 2 -37.973 6.906 15.431 1 70.64 ? O1A HEM 500 B 1 
HETATM 14 O O2A HEM . . . F 2 -37.385 6.929 17.593 1 70.73 ? O2A HEM 500 B 1 
HETATM 15 C C1B HEM . . . F 2 -34.415 -1.475 17.41 1 56.85 ? C1B HEM 500 B 1 
HETATM 16 C C2B HEM . . . F 2 -34.754 -2.876 17.275 1 55.31 ? C2B HEM 500 B 1 
HETATM 17 C C3B HEM . . . F 2 -33.623 -3.574 17.53 1 56.11 ? C3B HEM 500 B 1 
HETATM 18 C C4B HEM . . . F 2 -32.58 -2.623 17.836 1 57.03 ? C4B HEM 500 B 1 
HETATM 19 C CMB HEM . . . F 2 -36.131 -3.428 16.891 1 54.84 ? CMB HEM 500 B 1 
HETATM 20 C CAB HEM . . . F 2 -33.427 -5.11 17.49 1 56 ? CAB HEM 500 B 1 
HETATM 21 C CBB HEM . . . F 2 -33.813 -5.814 18.789 1 57.52 ? CBB HEM 500 B 1 
HETATM 22 C C1C HEM . . . F 2 -30.259 -1.968 18.416 1 59.98 ? C1C HEM 500 B 1 
HETATM 23 C C2C HEM . . . F 2 -28.836 -2.302 18.703 1 59.98 ? C2C HEM 500 B 1 
HETATM 24 C C3C HEM . . . F 2 -28.191 -1.128 18.88 1 59.95 ? C3C HEM 500 B 1 
HETATM 25 C C4C HEM . . . F 2 -29.186 -0.051 18.707 1 59.79 ? C4C HEM 500 B 1 
HETATM 26 C CMC HEM . . . F 2 -28.263 -3.761 18.769 1 61.03 ? CMC HEM 500 B 1 
HETATM 27 C CAC HEM . . . F 2 -26.701 -0.87 19.206 1 59.12 ? CAC HEM 500 B 1 
HETATM 28 C CBC HEM . . . F 2 -26.183 -1.535 20.49 1 60.34 ? CBC HEM 500 B 1 
HETATM 29 C C1D HEM . . . F 2 -29.852 2.32 18.637 1 59.34 ? C1D HEM 500 B 1 
HETATM 30 C C2D HEM . . . F 2 -29.553 3.726 18.744 1 59.62 ? C2D HEM 500 B 1 
HETATM 31 C C3D HEM . . . F 2 -30.709 4.414 18.49 1 60 ? C3D HEM 500 B 1 
HETATM 32 C C4D HEM . . . F 2 -31.709 3.411 18.228 1 60.09 ? C4D HEM 500 B 1 
HETATM 33 C CMD HEM . . . F 2 -28.163 4.28 19.082 1 60.31 ? CMD HEM 500 B 1 
HETATM 34 C CAD HEM . . . F 2 -30.927 5.945 18.475 1 59.94 ? CAD HEM 500 B 1 
HETATM 35 C CBD HEM . . . F 2 -31.17 6.467 17.025 1 60.39 ? CBD HEM 500 B 1 
HETATM 36 C CGD HEM . . . F 2 -31.419 7.957 16.998 1 60.3 ? CGD HEM 500 B 1 
HETATM 37 O O1D HEM . . . F 2 -31.374 8.621 18.056 1 60.89 ? O1D HEM 500 B 1 
HETATM 38 O O2D HEM . . . F 2 -31.668 8.43 15.874 1 60.27 ? O2D HEM 500 B 1 
HETATM 39 N NA HEM . . . F 2 -33.849 1.433 17.645 1 59.06 ? NA HEM 500 B 1 
HETATM 40 N NB HEM . . . F 2 -33.091 -1.347 17.751 1 57.25 ? NB HEM 500 B 1 
HETATM 41 N NC HEM . . . F 2 -30.436 -0.594 18.421 1 58.65 ? NC HEM 500 B 1 
HETATM 42 N ND HEM . . . F 2 -31.199 2.117 18.323 1 59.31 ? ND HEM 500 B 1 
HETATM 43 FE FE HEM . . . F 2 -32.146 0.408 18.058 1 58.31 ? FE HEM 500 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           458 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           43 
#