data_3EL3 # _model_server_result.job_id mIE_bv1OfIbthbzz2w13bA _model_server_result.datetime_utc '2025-01-15 02:18:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3el3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 3EL3 # _exptl.entry_id 3EL3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 204.351 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S,3aR,6S)-3,7,7,8-tetramethyl-2,3,4,5,6,7-hexahydro-1H-3a,6-methanoazulene _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3EL3 _cell.length_a 107.548 _cell.length_b 107.548 _cell.length_c 141.648 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EL3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E 1 1 B,F,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 410 A CYS 410 1_555 C FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc2 B SG CYS 410 B CYS 410 1_555 F FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? # _chem_comp.formula 'C15 H24' _chem_comp.formula_weight 204.351 _chem_comp.id EL3 _chem_comp.mon_nstd_flag . _chem_comp.name (3S,3aR,6S)-3,7,7,8-tetramethyl-2,3,4,5,6,7-hexahydro-1H-3a,6-methanoazulene _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2,2,3,7R-tetramethyl-1R,8S-tricyclo-[6.2.1.0(4,8)]undec-3-en # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAI CAO EL3 sing 83 n n CAI CAM EL3 sing 84 n n CAO CAH EL3 sing 85 n n CAO CAK EL3 sing 86 n n CAO CAL EL3 sing 87 n n CAH CAG EL3 sing 88 n n CAG CAM EL3 sing 89 n n CAM CAN EL3 sing 90 n n CAN CAC EL3 sing 91 n n CAN CAD EL3 sing 92 n n CAN CAJ EL3 sing 93 n n CAJ CAA EL3 sing 94 n n CAJ CAK EL3 doub 95 n n CAK CAE EL3 sing 96 n n CAE CAF EL3 sing 97 n n CAF CAL EL3 sing 98 n n CAL CAB EL3 sing 99 n n CAI HAI EL3 sing 100 n n CAI HAIA EL3 sing 101 n n CAH HAH EL3 sing 102 n n CAH HAHA EL3 sing 103 n n CAG HAG EL3 sing 104 n n CAG HAGA EL3 sing 105 n n CAM HAM EL3 sing 106 n n CAC HAC EL3 sing 107 n n CAC HACA EL3 sing 108 n n CAC HACB EL3 sing 109 n n CAD HAD EL3 sing 110 n n CAD HADA EL3 sing 111 n n CAD HADB EL3 sing 112 n n CAA HAA EL3 sing 113 n n CAA HAAA EL3 sing 114 n n CAA HAAB EL3 sing 115 n n CAE HAE EL3 sing 116 n n CAE HAEA EL3 sing 117 n n CAF HAF EL3 sing 118 n n CAF HAFA EL3 sing 119 n n CAL HAL EL3 sing 120 n n CAB HAB EL3 sing 121 n n CAB HABA EL3 sing 122 n n CAB HABB EL3 sing 123 n n # _atom_sites.entry_id 3EL3 _atom_sites.fract_transf_matrix[1][1] 0.009298 _atom_sites.fract_transf_matrix[1][2] 0.005368 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010737 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00706 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 500 500 HEM HEM . D 3 EL3 A 1 501 501 EL3 DRG . E 3 EL3 A 1 502 502 EL3 DRG . F 2 HEM B 1 500 500 HEM HEM . G 3 EL3 B 1 501 501 EL3 DRG . H 3 EL3 B 1 502 502 EL3 DRG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAI EL3 . . . D 3 -35.575 -4.982 -24.063 1 92.54 ? CAI EL3 501 A 1 HETATM 2 C CAO EL3 . . . D 3 -34.252 -4.712 -23.351 1 92.28 ? CAO EL3 501 A 1 HETATM 3 C CAH EL3 . . . D 3 -33.62 -3.699 -24.306 1 92.61 ? CAH EL3 501 A 1 HETATM 4 C CAG EL3 . . . D 3 -34.792 -2.745 -24.557 1 92.62 ? CAG EL3 501 A 1 HETATM 5 C CAM EL3 . . . D 3 -36.053 -3.532 -24.174 1 92.21 ? CAM EL3 501 A 1 HETATM 6 C CAN EL3 . . . D 3 -36.593 -3.051 -22.823 1 91.88 ? CAN EL3 501 A 1 HETATM 7 C CAC EL3 . . . D 3 -36.856 -1.546 -22.88 1 92.15 ? CAC EL3 501 A 1 HETATM 8 C CAD EL3 . . . D 3 -37.888 -3.797 -22.477 1 91.56 ? CAD EL3 501 A 1 HETATM 9 C CAJ EL3 . . . D 3 -35.564 -3.288 -21.714 1 91.72 ? CAJ EL3 501 A 1 HETATM 10 C CAA EL3 . . . D 3 -35.751 -2.619 -20.348 1 92.06 ? CAA EL3 501 A 1 HETATM 11 C CAK EL3 . . . D 3 -34.482 -4.124 -21.966 1 91.97 ? CAK EL3 501 A 1 HETATM 12 C CAE EL3 . . . D 3 -33.383 -4.655 -21.034 1 91.87 ? CAE EL3 501 A 1 HETATM 13 C CAF EL3 . . . D 3 -32.446 -5.391 -22.004 1 91.79 ? CAF EL3 501 A 1 HETATM 14 C CAL EL3 . . . D 3 -33.399 -5.95 -23.049 1 92.18 ? CAL EL3 501 A 1 HETATM 15 C CAB EL3 . . . D 3 -32.689 -6.497 -24.298 1 91.06 ? CAB EL3 501 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 214 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 15 #