data_3EL4 # _model_server_result.job_id 4wQxHoU5e_tPQncRlvxwZQ _model_server_result.datetime_utc '2024-11-24 08:45:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3el4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":100}' # _entry.id 3EL4 # _exptl.entry_id 3EL4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details 'chemically synthesized' _entity.formula_weight 670.841 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-N-[(2S,3R)-4-[(2S,3S,4aS,8aS)-3-(tert-butylcarbamoyl)-3,4,4a,5,6,7,8,8a-octahydro-1H-isoquinolin-2-yl]-3-hydroxy-1 -phenyl-butan-2-yl]-2-(quinolin-2-ylcarbonylamino)butanediamide' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3EL4 _cell.length_a 51.253 _cell.length_b 59.322 _cell.length_c 62.106 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EL4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C38 H50 N6 O5' _chem_comp.formula_weight 670.841 _chem_comp.id ROC _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-N-[(2S,3R)-4-[(2S,3S,4aS,8aS)-3-(tert-butylcarbamoyl)-3,4,4a,5,6,7,8,8a-octahydro-1H-isoquinolin-2-yl]-3-hydroxy-1 -phenyl-butan-2-yl]-2-(quinolin-2-ylcarbonylamino)butanediamide' _chem_comp.type peptide-like _chem_comp.pdbx_synonyms 'Fortovase;SAQUINAVIR;RO 31-8959' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C ROC doub 283 n n C C2 ROC sing 284 n n N1 C2 ROC doub 285 n y N1 C8A ROC sing 286 n y C2 C3 ROC sing 287 n y C3 C4 ROC doub 288 n y C3 H3 ROC sing 289 n n C4 C4A ROC sing 290 n y C4 H4 ROC sing 291 n n C4A C5 ROC doub 292 n y C4A C8A ROC sing 293 n y C5 C6 ROC sing 294 n y C5 H5 ROC sing 295 n n C6 C7 ROC doub 296 n y C6 H6 ROC sing 297 n n C7 C8 ROC sing 298 n y C7 H7 ROC sing 299 n n C8 C8A ROC doub 300 n y C8 H8 ROC sing 301 n n N CA ROC sing 302 n n N H ROC sing 303 n n CA C1 ROC sing 304 n n CA CB ROC sing 305 n n CA HA ROC sing 306 n n C1 O1 ROC doub 307 n n CB CG ROC sing 308 n n CB HB2 ROC sing 309 n n CB HB3 ROC sing 310 n n CG OD1 ROC doub 311 n n CG ND2 ROC sing 312 n n ND2 HD21 ROC sing 313 n n ND2 HD22 ROC sing 314 n n C9 O2 ROC sing 315 n n C9 CA1 ROC sing 316 n n C9 HC ROC sing 317 n n O2 HO ROC sing 318 n n CA1 N2 ROC sing 319 n n CA1 CB1 ROC sing 320 n n CA1 HA1 ROC sing 321 n n N2 H1 ROC sing 322 n n CB1 CG1 ROC sing 323 n n CB1 HB21 ROC sing 324 n n CB1 HB31 ROC sing 325 n n CG1 CD1 ROC doub 326 n y CG1 CD2 ROC sing 327 n y CD1 CE1 ROC sing 328 n y CD1 HD1 ROC sing 329 n n CD2 CE2 ROC doub 330 n y CD2 HD2 ROC sing 331 n n CE1 CZ ROC doub 332 n y CE1 HE1 ROC sing 333 n n CE2 CZ ROC sing 334 n y CE2 HE2 ROC sing 335 n n CZ HZ ROC sing 336 n n N11 CM ROC sing 337 n n N11 C21 ROC sing 338 n n N11 C81 ROC sing 339 n n CM HM1 ROC sing 340 n n CM HM2 ROC sing 341 n n C21 CC ROC sing 342 n n C21 C31 ROC sing 343 n n C21 H2 ROC sing 344 n n CC O3 ROC doub 345 n n C31 C3A ROC sing 346 n n C31 H31 ROC sing 347 n n C31 H32 ROC sing 348 n n C3A C41 ROC sing 349 n n C3A C7A ROC sing 350 n n C3A H3A ROC sing 351 n n C41 C51 ROC sing 352 n n C41 H41 ROC sing 353 n n C41 H42 ROC sing 354 n n C51 C61 ROC sing 355 n n C51 H51 ROC sing 356 n n C51 H52 ROC sing 357 n n C61 C71 ROC sing 358 n n C61 H61 ROC sing 359 n n C61 H62 ROC sing 360 n n C71 C7A ROC sing 361 n n C71 H71 ROC sing 362 n n C71 H72 ROC sing 363 n n C7A C81 ROC sing 364 n n C7A H7A ROC sing 365 n n C81 H81 ROC sing 366 n n C81 H82 ROC sing 367 n n N3 CD ROC sing 368 n n N3 HN1 ROC sing 369 n n CD C11 ROC sing 370 n n CD C22 ROC sing 371 n n CD C32 ROC sing 372 n n C11 H11 ROC sing 373 n n C11 H12 ROC sing 374 n n C11 H13 ROC sing 375 n n C22 H21 ROC sing 376 n n C22 H22 ROC sing 377 n n C22 H23 ROC sing 378 n n C32 H311 ROC sing 379 n n C32 H321 ROC sing 380 n n C32 H33 ROC sing 381 n n C N ROC sing 382 n n C1 N2 ROC sing 383 n n C9 CM ROC sing 384 n n CC N3 ROC sing 385 n n # _atom_sites.entry_id 3EL4 _atom_sites.fract_transf_matrix[1][1] 0.019511 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016857 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016102 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ROC A 1 100 100 ROC ROC . D 3 ACT B 1 503 503 ACT ACT . E 3 ACT B 1 504 504 ACT ACT . F 4 HOH A 1 105 105 HOH HOH . F 4 HOH A 2 106 106 HOH HOH . F 4 HOH A 3 107 107 HOH HOH . F 4 HOH A 4 108 108 HOH HOH . F 4 HOH A 5 109 109 HOH HOH . F 4 HOH A 6 110 110 HOH HOH . F 4 HOH A 7 111 111 HOH HOH . F 4 HOH A 8 112 112 HOH HOH . F 4 HOH A 9 113 113 HOH HOH . F 4 HOH A 10 114 114 HOH HOH . F 4 HOH A 11 115 115 HOH HOH . F 4 HOH A 12 116 116 HOH HOH . F 4 HOH A 13 117 117 HOH HOH . F 4 HOH A 14 118 118 HOH HOH . F 4 HOH A 15 119 119 HOH HOH . F 4 HOH A 16 120 120 HOH HOH . F 4 HOH A 17 121 121 HOH HOH . F 4 HOH A 18 122 122 HOH HOH . F 4 HOH A 19 123 123 HOH HOH . F 4 HOH A 20 124 124 HOH HOH . F 4 HOH A 21 125 125 HOH HOH . F 4 HOH A 22 126 126 HOH HOH . F 4 HOH A 23 127 127 HOH HOH . F 4 HOH A 24 128 128 HOH HOH . F 4 HOH A 25 129 129 HOH HOH . F 4 HOH A 26 130 130 HOH HOH . F 4 HOH A 27 131 131 HOH HOH . F 4 HOH A 28 132 132 HOH HOH . F 4 HOH A 29 133 133 HOH HOH . F 4 HOH A 30 134 134 HOH HOH . F 4 HOH A 31 135 135 HOH HOH . F 4 HOH A 32 136 136 HOH HOH . F 4 HOH A 33 137 137 HOH HOH . F 4 HOH A 34 138 138 HOH HOH . F 4 HOH A 35 139 139 HOH HOH . F 4 HOH A 36 140 140 HOH HOH . F 4 HOH A 37 141 141 HOH HOH . F 4 HOH A 38 142 142 HOH HOH . F 4 HOH A 39 143 143 HOH HOH . F 4 HOH A 40 144 144 HOH HOH . F 4 HOH A 41 145 145 HOH HOH . F 4 HOH A 42 146 146 HOH HOH . F 4 HOH A 43 147 147 HOH HOH . F 4 HOH A 44 148 148 HOH HOH . F 4 HOH A 45 149 149 HOH HOH . F 4 HOH A 46 150 150 HOH HOH . F 4 HOH A 47 151 151 HOH HOH . F 4 HOH A 48 152 152 HOH HOH . F 4 HOH A 49 153 153 HOH HOH . F 4 HOH A 50 519 519 HOH HOH . F 4 HOH A 51 522 522 HOH HOH . G 4 HOH B 1 505 505 HOH HOH . G 4 HOH B 2 506 506 HOH HOH . G 4 HOH B 3 507 507 HOH HOH . G 4 HOH B 4 508 508 HOH HOH . G 4 HOH B 5 509 509 HOH HOH . G 4 HOH B 6 510 510 HOH HOH . G 4 HOH B 7 511 511 HOH HOH . G 4 HOH B 8 512 512 HOH HOH . G 4 HOH B 9 513 513 HOH HOH . G 4 HOH B 10 514 514 HOH HOH . G 4 HOH B 11 515 515 HOH HOH . G 4 HOH B 12 516 516 HOH HOH . G 4 HOH B 13 517 517 HOH HOH . G 4 HOH B 14 518 518 HOH HOH . G 4 HOH B 15 520 520 HOH HOH . G 4 HOH B 16 521 521 HOH HOH . G 4 HOH B 17 523 523 HOH HOH . G 4 HOH B 18 524 524 HOH HOH . G 4 HOH B 19 525 525 HOH HOH . G 4 HOH B 20 526 526 HOH HOH . G 4 HOH B 21 527 527 HOH HOH . G 4 HOH B 22 528 528 HOH HOH . G 4 HOH B 23 529 529 HOH HOH . G 4 HOH B 24 530 530 HOH HOH . G 4 HOH B 25 531 531 HOH HOH . G 4 HOH B 26 532 532 HOH HOH . G 4 HOH B 27 533 533 HOH HOH . G 4 HOH B 28 534 534 HOH HOH . G 4 HOH B 29 535 535 HOH HOH . G 4 HOH B 30 536 536 HOH HOH . G 4 HOH B 31 537 537 HOH HOH . G 4 HOH B 32 538 538 HOH HOH . G 4 HOH B 33 539 539 HOH HOH . G 4 HOH B 34 540 540 HOH HOH . G 4 HOH B 35 541 541 HOH HOH . G 4 HOH B 36 542 542 HOH HOH . G 4 HOH B 37 543 543 HOH HOH . G 4 HOH B 38 544 544 HOH HOH . G 4 HOH B 39 545 545 HOH HOH . G 4 HOH B 40 546 546 HOH HOH . G 4 HOH B 41 547 547 HOH HOH . G 4 HOH B 42 548 548 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ROC . . . C 2 6.226 -6.345 18.059 1 26.76 ? C ROC 100 A 1 HETATM 2 O O ROC . . . C 2 6.521 -5.737 19.098 1 21.59 ? O ROC 100 A 1 HETATM 3 N N1 ROC . . . C 2 5.249 -8.134 16.794 1 31.88 ? N1 ROC 100 A 1 HETATM 4 C C2 ROC . . . C 2 5.494 -7.554 18.031 1 29.84 ? C2 ROC 100 A 1 HETATM 5 C C3 ROC . . . C 2 4.989 -8.19 19.203 1 32.58 ? C3 ROC 100 A 1 HETATM 6 C C4 ROC . . . C 2 4.253 -9.401 19.071 1 35.91 ? C4 ROC 100 A 1 HETATM 7 C C5 ROC . . . C 2 3.297 -11.171 17.625 1 37.26 ? C5 ROC 100 A 1 HETATM 8 C C6 ROC . . . C 2 3.099 -11.692 16.308 1 37.62 ? C6 ROC 100 A 1 HETATM 9 C C7 ROC . . . C 2 3.624 -11.018 15.161 1 37.03 ? C7 ROC 100 A 1 HETATM 10 C C8 ROC . . . C 2 4.355 -9.81 15.314 1 36.33 ? C8 ROC 100 A 1 HETATM 11 C C4A ROC . . . C 2 4.028 -9.961 17.785 1 36.09 ? C4A ROC 100 A 1 HETATM 12 C C8A ROC . . . C 2 4.554 -9.29 16.618 1 34.33 ? C8A ROC 100 A 1 HETATM 13 N N ROC . . . C 2 6.587 -5.814 16.873 1 24.38 ? N ROC 100 A 1 HETATM 14 C CA ROC . . . C 2 7.317 -4.554 16.788 1 22.79 ? CA ROC 100 A 1 HETATM 15 C C1 ROC . . . C 2 6.551 -3.602 15.884 1 22.96 ? C1 ROC 100 A 1 HETATM 16 O O1 ROC . . . C 2 6.644 -3.647 14.657 1 18.87 ? O1 ROC 100 A 1 HETATM 17 C CB ROC . . . C 2 8.729 -4.798 16.259 1 23.01 ? CB ROC 100 A 1 HETATM 18 C CG ROC . . . C 2 9.593 -5.524 17.268 1 25.64 ? CG ROC 100 A 1 HETATM 19 O OD1 ROC . . . C 2 9.936 -4.97 18.311 1 22.77 ? OD1 ROC 100 A 1 HETATM 20 N ND2 ROC . . . C 2 9.927 -6.775 16.979 1 25.82 ? ND2 ROC 100 A 1 HETATM 21 C C9 ROC . . . C 2 5.528 -0.356 16.089 1 21.04 ? C9 ROC 100 A 1 HETATM 22 O O2 ROC . . . C 2 5.251 -0.022 17.448 1 19.96 ? O2 ROC 100 A 1 HETATM 23 C CA1 ROC . . . C 2 4.942 -1.769 15.79 1 20.71 ? CA1 ROC 100 A 1 HETATM 24 N N2 ROC . . . C 2 5.757 -2.729 16.518 1 22.26 ? N2 ROC 100 A 1 HETATM 25 C CB1 ROC . . . C 2 3.474 -1.95 16.27 1 21.76 ? CB1 ROC 100 A 1 HETATM 26 C CG1 ROC . . . C 2 2.975 -3.377 16.156 1 22.33 ? CG1 ROC 100 A 1 HETATM 27 C CD1 ROC . . . C 2 2.602 -3.889 14.915 1 23.6 ? CD1 ROC 100 A 1 HETATM 28 C CD2 ROC . . . C 2 2.936 -4.172 17.301 1 24.16 ? CD2 ROC 100 A 1 HETATM 29 C CE1 ROC . . . C 2 2.191 -5.214 14.825 1 23.07 ? CE1 ROC 100 A 1 HETATM 30 C CE2 ROC . . . C 2 2.524 -5.488 17.192 1 23.63 ? CE2 ROC 100 A 1 HETATM 31 C CZ ROC . . . C 2 2.154 -6.008 15.957 1 23.28 ? CZ ROC 100 A 1 HETATM 32 N N11 ROC . . . C 2 5.858 0.796 13.89 1 18.88 ? N11 ROC 100 A 1 HETATM 33 C CM ROC . . . C 2 5.115 0.801 15.162 1 18.15 ? CM ROC 100 A 1 HETATM 34 C C21 ROC . . . C 2 5.065 1.36 12.743 1 19.7 ? C21 ROC 100 A 1 HETATM 35 C CC ROC . . . C 2 3.783 0.603 12.42 1 20.99 ? CC ROC 100 A 1 HETATM 36 O O3 ROC . . . C 2 3.81 -0.635 12.41 1 20.72 ? O3 ROC 100 A 1 HETATM 37 C C31 ROC . . . C 2 5.901 1.368 11.448 1 19.86 ? C31 ROC 100 A 1 HETATM 38 C C3A ROC . . . C 2 7.206 2.146 11.676 1 21.16 ? C3A ROC 100 A 1 HETATM 39 C C41 ROC . . . C 2 8.085 2.16 10.428 1 21.43 ? C41 ROC 100 A 1 HETATM 40 C C51 ROC . . . C 2 8.771 0.796 10.173 1 22.55 ? C51 ROC 100 A 1 HETATM 41 C C61 ROC . . . C 2 9.599 0.301 11.377 1 22.13 ? C61 ROC 100 A 1 HETATM 42 C C71 ROC . . . C 2 8.676 0.207 12.604 1 21.22 ? C71 ROC 100 A 1 HETATM 43 C C7A ROC . . . C 2 8.036 1.577 12.909 1 19.55 ? C7A ROC 100 A 1 HETATM 44 C C81 ROC . . . C 2 7.11 1.534 14.137 1 20.31 ? C81 ROC 100 A 1 HETATM 45 N N3 ROC . . . C 2 2.718 1.408 12.22 1 20.01 ? N3 ROC 100 A 1 HETATM 46 C CD ROC . . . C 2 1.363 1.001 11.858 1 18.07 ? CD ROC 100 A 1 HETATM 47 C C11 ROC . . . C 2 0.576 2.286 11.765 1 20.14 ? C11 ROC 100 A 1 HETATM 48 C C22 ROC . . . C 2 1.303 0.351 10.496 1 21.15 ? C22 ROC 100 A 1 HETATM 49 C C32 ROC . . . C 2 0.713 0.109 12.932 1 19.92 ? C32 ROC 100 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 49 #