data_3EL8 # _model_server_result.job_id 8-YnB2GKSqQp-HrjnoP53w _model_server_result.datetime_utc '2024-11-15 19:28:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3el8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 3EL8 # _exptl.entry_id 3EL8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 455.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-{4-[4-amino-1-(1-methylethyl)-1H-pyrazolo[3,4-d]pyrimidin-3-yl]phenyl}-3-[3-(trifluoromethyl)phenyl]urea _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 101.01 _cell.angle_beta 90.25 _cell.angle_gamma 90.12 _cell.entry_id 3EL8 _cell.length_a 42.375 _cell.length_b 63.693 _cell.length_c 73.792 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EL8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H20 F3 N7 O' _chem_comp.formula_weight 455.436 _chem_comp.id PD5 _chem_comp.mon_nstd_flag . _chem_comp.name 1-{4-[4-amino-1-(1-methylethyl)-1H-pyrazolo[3,4-d]pyrimidin-3-yl]phenyl}-3-[3-(trifluoromethyl)phenyl]urea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-(4-(4-amino-1-isopropyl-1H-pyrazolo[3,4-d]pyrimidin-3-yl)phenyl)-3-(3-(trifluoromethyl)phenyl)urea # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NBF C4 PD5 sing 237 n y N3 C4 PD5 doub 238 n y C4 C5 PD5 sing 239 n y CBB C5 PD5 sing 240 n y C5 C6 PD5 doub 241 n y N1 C6 PD5 sing 242 n y C6 NAC PD5 sing 243 n n C2 N1 PD5 doub 244 n y N3 C2 PD5 sing 245 n y CBE CAA PD5 sing 246 n n CAA HAA PD5 sing 247 n n CAA HAAA PD5 sing 248 n n CAA HAAB PD5 sing 249 n n CAB CBE PD5 sing 250 n n CBE NBF PD5 sing 251 n n CBE HBE PD5 sing 252 n n CAB HAB PD5 sing 253 n n CAB HABA PD5 sing 254 n n CAB HABB PD5 sing 255 n n NBF NAS PD5 sing 256 n y NAS CBB PD5 doub 257 n y C2 H2 PD5 sing 258 n n NAC HNAC PD5 sing 259 n n NAC HNAA PD5 sing 260 n n CBB CAZ PD5 sing 261 n y CAN CAZ PD5 doub 262 n y CAZ CAO PD5 sing 263 n y CAO CAM PD5 doub 264 n y CAO HAO PD5 sing 265 n n CAX CAM PD5 sing 266 n y CAM HAM PD5 sing 267 n n CAN CAL PD5 sing 268 n y CAN HAN PD5 sing 269 n n CAL CAX PD5 doub 270 n y CAL HAL PD5 sing 271 n n CAX NAT PD5 sing 272 n n CAV NAT PD5 sing 273 n n NAT HNAT PD5 sing 274 n n OAD CAV PD5 doub 275 n n CAV NAU PD5 sing 276 n n CAY NAU PD5 sing 277 n n NAU HNAU PD5 sing 278 n n CAP CAY PD5 doub 279 n y CAY CAJ PD5 sing 280 n y CBA CAP PD5 sing 281 n y CAP HAP PD5 sing 282 n n CAH CAJ PD5 doub 283 n y CAJ HAJ PD5 sing 284 n n CAK CAH PD5 sing 285 n y CAH HAH PD5 sing 286 n n CBA CAK PD5 doub 287 n y CAK HAK PD5 sing 288 n n CBG CBA PD5 sing 289 n n FAG CBG PD5 sing 290 n n FAE CBG PD5 sing 291 n n CBG FAF PD5 sing 292 n n # _atom_sites.entry_id 3EL8 _atom_sites.fract_transf_matrix[1][1] 0.023599 _atom_sites.fract_transf_matrix[1][2] 0.000049 _atom_sites.fract_transf_matrix[1][3] 0.000115 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0157 _atom_sites.fract_transf_matrix[2][3] 0.003055 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013806 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PD5 A 1 601 601 PD5 PD5 . D 3 HOH A 1 1 1 HOH HOH . D 3 HOH A 2 2 2 HOH HOH . D 3 HOH A 3 3 3 HOH HOH . D 3 HOH A 4 4 4 HOH HOH . D 3 HOH A 5 5 5 HOH HOH . D 3 HOH A 6 6 6 HOH HOH . D 3 HOH A 7 7 7 HOH HOH . D 3 HOH A 8 8 8 HOH HOH . D 3 HOH A 9 9 9 HOH HOH . D 3 HOH A 10 13 13 HOH HOH . D 3 HOH A 11 14 14 HOH HOH . D 3 HOH A 12 15 15 HOH HOH . D 3 HOH A 13 16 16 HOH HOH . D 3 HOH A 14 17 17 HOH HOH . D 3 HOH A 15 18 18 HOH HOH . D 3 HOH A 16 19 19 HOH HOH . D 3 HOH A 17 20 20 HOH HOH . D 3 HOH A 18 21 21 HOH HOH . D 3 HOH A 19 22 22 HOH HOH . D 3 HOH A 20 23 23 HOH HOH . D 3 HOH A 21 24 24 HOH HOH . D 3 HOH A 22 25 25 HOH HOH . D 3 HOH A 23 26 26 HOH HOH . D 3 HOH A 24 27 27 HOH HOH . D 3 HOH A 25 28 28 HOH HOH . D 3 HOH A 26 29 29 HOH HOH . D 3 HOH A 27 30 30 HOH HOH . D 3 HOH A 28 31 31 HOH HOH . D 3 HOH A 29 32 32 HOH HOH . D 3 HOH A 30 33 33 HOH HOH . D 3 HOH A 31 34 34 HOH HOH . D 3 HOH A 32 35 35 HOH HOH . D 3 HOH A 33 36 36 HOH HOH . D 3 HOH A 34 37 37 HOH HOH . D 3 HOH A 35 38 38 HOH HOH . D 3 HOH A 36 40 40 HOH HOH . D 3 HOH A 37 41 41 HOH HOH . D 3 HOH A 38 42 42 HOH HOH . D 3 HOH A 39 43 43 HOH HOH . D 3 HOH A 40 44 44 HOH HOH . D 3 HOH A 41 45 45 HOH HOH . D 3 HOH A 42 46 46 HOH HOH . D 3 HOH A 43 47 47 HOH HOH . D 3 HOH A 44 48 48 HOH HOH . D 3 HOH A 45 49 49 HOH HOH . D 3 HOH A 46 50 50 HOH HOH . D 3 HOH A 47 51 51 HOH HOH . D 3 HOH A 48 52 52 HOH HOH . D 3 HOH A 49 53 53 HOH HOH . D 3 HOH A 50 54 54 HOH HOH . D 3 HOH A 51 55 55 HOH HOH . D 3 HOH A 52 82 82 HOH HOH . D 3 HOH A 53 95 95 HOH HOH . D 3 HOH A 54 96 96 HOH HOH . D 3 HOH A 55 97 97 HOH HOH . D 3 HOH A 56 98 98 HOH HOH . D 3 HOH A 57 99 99 HOH HOH . D 3 HOH A 58 100 100 HOH HOH . D 3 HOH A 59 101 101 HOH HOH . D 3 HOH A 60 102 102 HOH HOH . D 3 HOH A 61 103 103 HOH HOH . D 3 HOH A 62 104 104 HOH HOH . D 3 HOH A 63 105 105 HOH HOH . D 3 HOH A 64 106 106 HOH HOH . D 3 HOH A 65 107 107 HOH HOH . D 3 HOH A 66 108 108 HOH HOH . D 3 HOH A 67 109 109 HOH HOH . D 3 HOH A 68 110 110 HOH HOH . D 3 HOH A 69 111 111 HOH HOH . D 3 HOH A 70 112 112 HOH HOH . D 3 HOH A 71 125 125 HOH HOH . D 3 HOH A 72 126 126 HOH HOH . D 3 HOH A 73 133 133 HOH HOH . D 3 HOH A 74 134 134 HOH HOH . D 3 HOH A 75 136 136 HOH HOH . D 3 HOH A 76 137 137 HOH HOH . D 3 HOH A 77 138 138 HOH HOH . D 3 HOH A 78 139 139 HOH HOH . D 3 HOH A 79 140 140 HOH HOH . D 3 HOH A 80 141 141 HOH HOH . D 3 HOH A 81 142 142 HOH HOH . D 3 HOH A 82 149 149 HOH HOH . D 3 HOH A 83 150 150 HOH HOH . D 3 HOH A 84 151 151 HOH HOH . D 3 HOH A 85 152 152 HOH HOH . D 3 HOH A 86 153 153 HOH HOH . D 3 HOH A 87 154 154 HOH HOH . D 3 HOH A 88 155 155 HOH HOH . D 3 HOH A 89 156 156 HOH HOH . D 3 HOH A 90 157 157 HOH HOH . D 3 HOH A 91 158 158 HOH HOH . D 3 HOH A 92 159 159 HOH HOH . D 3 HOH A 93 160 160 HOH HOH . D 3 HOH A 94 161 161 HOH HOH . D 3 HOH A 95 162 162 HOH HOH . D 3 HOH A 96 163 163 HOH HOH . D 3 HOH A 97 174 174 HOH HOH . D 3 HOH A 98 175 175 HOH HOH . D 3 HOH A 99 176 176 HOH HOH . E 3 HOH B 1 10 10 HOH HOH . E 3 HOH B 2 11 11 HOH HOH . E 3 HOH B 3 12 12 HOH HOH . E 3 HOH B 4 39 39 HOH HOH . E 3 HOH B 5 56 56 HOH HOH . E 3 HOH B 6 57 57 HOH HOH . E 3 HOH B 7 58 58 HOH HOH . E 3 HOH B 8 59 59 HOH HOH . E 3 HOH B 9 60 60 HOH HOH . E 3 HOH B 10 61 61 HOH HOH . E 3 HOH B 11 62 62 HOH HOH . E 3 HOH B 12 63 63 HOH HOH . E 3 HOH B 13 64 64 HOH HOH . E 3 HOH B 14 65 65 HOH HOH . E 3 HOH B 15 66 66 HOH HOH . E 3 HOH B 16 67 67 HOH HOH . E 3 HOH B 17 68 68 HOH HOH . E 3 HOH B 18 69 69 HOH HOH . E 3 HOH B 19 70 70 HOH HOH . E 3 HOH B 20 71 71 HOH HOH . E 3 HOH B 21 72 72 HOH HOH . E 3 HOH B 22 73 73 HOH HOH . E 3 HOH B 23 74 74 HOH HOH . E 3 HOH B 24 75 75 HOH HOH . E 3 HOH B 25 76 76 HOH HOH . E 3 HOH B 26 77 77 HOH HOH . E 3 HOH B 27 78 78 HOH HOH . E 3 HOH B 28 79 79 HOH HOH . E 3 HOH B 29 80 80 HOH HOH . E 3 HOH B 30 81 81 HOH HOH . E 3 HOH B 31 83 83 HOH HOH . E 3 HOH B 32 84 84 HOH HOH . E 3 HOH B 33 85 85 HOH HOH . E 3 HOH B 34 86 86 HOH HOH . E 3 HOH B 35 87 87 HOH HOH . E 3 HOH B 36 88 88 HOH HOH . E 3 HOH B 37 89 89 HOH HOH . E 3 HOH B 38 90 90 HOH HOH . E 3 HOH B 39 91 91 HOH HOH . E 3 HOH B 40 92 92 HOH HOH . E 3 HOH B 41 93 93 HOH HOH . E 3 HOH B 42 94 94 HOH HOH . E 3 HOH B 43 113 113 HOH HOH . E 3 HOH B 44 114 114 HOH HOH . E 3 HOH B 45 115 115 HOH HOH . E 3 HOH B 46 116 116 HOH HOH . E 3 HOH B 47 117 117 HOH HOH . E 3 HOH B 48 118 118 HOH HOH . E 3 HOH B 49 119 119 HOH HOH . E 3 HOH B 50 120 120 HOH HOH . E 3 HOH B 51 121 121 HOH HOH . E 3 HOH B 52 122 122 HOH HOH . E 3 HOH B 53 123 123 HOH HOH . E 3 HOH B 54 124 124 HOH HOH . E 3 HOH B 55 127 127 HOH HOH . E 3 HOH B 56 128 128 HOH HOH . E 3 HOH B 57 129 129 HOH HOH . E 3 HOH B 58 130 130 HOH HOH . E 3 HOH B 59 131 131 HOH HOH . E 3 HOH B 60 132 132 HOH HOH . E 3 HOH B 61 135 135 HOH HOH . E 3 HOH B 62 143 143 HOH HOH . E 3 HOH B 63 144 144 HOH HOH . E 3 HOH B 64 145 145 HOH HOH . E 3 HOH B 65 146 146 HOH HOH . E 3 HOH B 66 147 147 HOH HOH . E 3 HOH B 67 148 148 HOH HOH . E 3 HOH B 68 164 164 HOH HOH . E 3 HOH B 69 165 165 HOH HOH . E 3 HOH B 70 166 166 HOH HOH . E 3 HOH B 71 167 167 HOH HOH . E 3 HOH B 72 168 168 HOH HOH . E 3 HOH B 73 169 169 HOH HOH . E 3 HOH B 74 170 170 HOH HOH . E 3 HOH B 75 171 171 HOH HOH . E 3 HOH B 76 172 172 HOH HOH . E 3 HOH B 77 173 173 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 PD5 . . . C 2 6.214 8.223 6.764 1 56.59 ? C4 PD5 601 A 1 HETATM 2 C C5 PD5 . . . C 2 5.566 7.216 7.456 1 56.59 ? C5 PD5 601 A 1 HETATM 3 C C6 PD5 . . . C 2 6.321 6.169 7.971 1 55.18 ? C6 PD5 601 A 1 HETATM 4 N N1 PD5 . . . C 2 7.645 6.177 7.775 1 53.86 ? N1 PD5 601 A 1 HETATM 5 N N3 PD5 . . . C 2 7.55 8.166 6.606 1 54.44 ? N3 PD5 601 A 1 HETATM 6 C CAA PD5 . . . C 2 4.534 11.385 5.967 1 56.59 ? CAA PD5 601 A 1 HETATM 7 C CBE PD5 . . . C 2 5.547 10.295 5.608 1 57.67 ? CBE PD5 601 A 1 HETATM 8 C CAB PD5 . . . C 2 5.476 9.956 4.117 1 57.19 ? CAB PD5 601 A 1 HETATM 9 N NBF PD5 . . . C 2 5.276 9.085 6.395 1 56.56 ? NBF PD5 601 A 1 HETATM 10 N NAS PD5 . . . C 2 4.152 8.737 6.772 1 57.1 ? NAS PD5 601 A 1 HETATM 11 C C2 PD5 . . . C 2 8.234 7.158 7.108 1 54.22 ? C2 PD5 601 A 1 HETATM 12 N NAC PD5 . . . C 2 5.748 5.182 8.654 1 53.13 ? NAC PD5 601 A 1 HETATM 13 C CBB PD5 . . . C 2 4.229 7.587 7.434 1 59.28 ? CBB PD5 601 A 1 HETATM 14 C CAZ PD5 . . . C 2 3.18 6.875 8.007 1 63.77 ? CAZ PD5 601 A 1 HETATM 15 C CAO PD5 . . . C 2 2.267 7.537 8.817 1 65.99 ? CAO PD5 601 A 1 HETATM 16 C CAM PD5 . . . C 2 1.122 6.881 9.259 1 69.53 ? CAM PD5 601 A 1 HETATM 17 C CAN PD5 . . . C 2 2.952 5.545 7.668 1 66.65 ? CAN PD5 601 A 1 HETATM 18 C CAL PD5 . . . C 2 1.806 4.888 8.108 1 68.04 ? CAL PD5 601 A 1 HETATM 19 C CAX PD5 . . . C 2 0.878 5.561 8.895 1 70.03 ? CAX PD5 601 A 1 HETATM 20 N NAT PD5 . . . C 2 -0.308 5.037 9.208 1 72.44 ? NAT PD5 601 A 1 HETATM 21 C CAV PD5 . . . C 2 -0.722 3.801 8.94 1 73.75 ? CAV PD5 601 A 1 HETATM 22 O OAD PD5 . . . C 2 -0.02 2.971 8.368 1 74.16 ? OAD PD5 601 A 1 HETATM 23 N NAU PD5 . . . C 2 -1.964 3.547 9.347 1 75.16 ? NAU PD5 601 A 1 HETATM 24 C CAY PD5 . . . C 2 -2.638 2.405 9.212 1 75.89 ? CAY PD5 601 A 1 HETATM 25 C CAP PD5 . . . C 2 -2.111 1.275 8.599 1 76.19 ? CAP PD5 601 A 1 HETATM 26 C CAJ PD5 . . . C 2 -3.936 2.369 9.704 1 76.09 ? CAJ PD5 601 A 1 HETATM 27 C CAH PD5 . . . C 2 -4.712 1.221 9.586 1 76.59 ? CAH PD5 601 A 1 HETATM 28 C CAK PD5 . . . C 2 -4.178 0.097 8.97 1 76.6 ? CAK PD5 601 A 1 HETATM 29 C CBA PD5 . . . C 2 -2.879 0.12 8.476 1 76.99 ? CBA PD5 601 A 1 HETATM 30 C CBG PD5 . . . C 2 -2.32 -1.145 7.819 1 77.92 ? CBG PD5 601 A 1 HETATM 31 F FAF PD5 . . . C 2 -2.256 -2.112 8.729 1 78.37 ? FAF PD5 601 A 1 HETATM 32 F FAG PD5 . . . C 2 -3.127 -1.52 6.832 1 75.96 ? FAG PD5 601 A 1 HETATM 33 F FAE PD5 . . . C 2 -1.104 -0.932 7.328 1 78.8 ? FAE PD5 601 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #