data_3ELC
#
_model_server_result.job_id            A1GleDUlAt68Wb9It3RHTg 
_model_server_result.datetime_utc      '2024-11-08 03:34:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3elc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":901}' 
#
_entry.id    3ELC 
#
_exptl.entry_id    3ELC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              261.207 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-amino-1-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-5-fluoro-pyrimidin-2-one 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.66 
_cell.angle_gamma         90 
_cell.entry_id            3ELC 
_cell.length_a            104.676 
_cell.length_b            54.833 
_cell.length_c            88.506 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ELC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 G N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 14 A ASP 8 1_555 D ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc2 A NE2 HIS 16 A HIS 10 1_555 D ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc3 A ND1 HIS 48 A HIS 42 1_555 D ZN ZN . A ZN 801 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc4 A ND1 HIS 48 A HIS 42 1_555 D ZN ZN . A ZN 801 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.22 ? 
metalc ? metalc5 B NE2 HIS 16 B HIS 10 1_555 F ZN ZN . B ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? 
metalc ? metalc6 B ND1 HIS 48 B HIS 42 1_555 F ZN ZN . B ZN 802 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc7 B ND1 HIS 48 B HIS 42 1_555 F ZN ZN . B ZN 802 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.199 ? 
metalc ? metalc8 C NE2 HIS 16 C HIS 10 1_555 H ZN ZN . C ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? 
metalc ? metalc9 C ND1 HIS 48 C HIS 42 1_555 H ZN ZN . C ZN 803 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc10 C ND1 HIS 48 C HIS 42 1_555 H ZN ZN . C ZN 803 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.222 ? 
#
_chem_comp.formula           'C9 H12 F N3 O5' 
_chem_comp.formula_weight    261.207 
_chem_comp.id                F01 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-amino-1-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-5-fluoro-pyrimidin-2-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     4-amino-5-fluoro-1-((2R,3S,4R,5R)-tetrahydro-3,4-dihydroxy-5-(hydroxymethyl)furan-2-yl)pyrimidin-2(1H)-one 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C6 F01 doub 83 n n 
C6 N1 F01 sing 84 n n 
C6 N3 F01 sing 85 n n 
N1 C7 F01 doub 86 n n 
C7 N2 F01 sing 87 n n 
C7 C8 F01 sing 88 n n 
C8 F1 F01 sing 89 n n 
C8 C9 F01 doub 90 n n 
C9 N3 F01 sing 91 n n 
N3 C1 F01 sing 92 n n 
C1 O4 F01 sing 93 n n 
C1 C2 F01 sing 94 n n 
O4 C4 F01 sing 95 n n 
C4 C5 F01 sing 96 n n 
C4 C3 F01 sing 97 n n 
C5 O5 F01 sing 98 n n 
C3 O3 F01 sing 99 n n 
C3 C2 F01 sing 100 n n 
C2 O2 F01 sing 101 n n 
N2 HN2 F01 sing 102 n n 
N2 HN2A F01 sing 103 n n 
C9 H9 F01 sing 104 n n 
C1 H1 F01 sing 105 n n 
C4 H4 F01 sing 106 n n 
C5 H5 F01 sing 107 n n 
C5 H5A F01 sing 108 n n 
O5 HO5 F01 sing 109 n n 
C3 H3 F01 sing 110 n n 
O3 HO3 F01 sing 111 n n 
C2 H2 F01 sing 112 n n 
O2 HO2 F01 sing 113 n n 
#
_atom_sites.entry_id                     3ELC 
_atom_sites.fract_transf_matrix[1][1]    0.009553 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001626 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018237 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011461 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 ZN A 1 801 801 ZN ZN . 
E 3 F01 A 1 901 901 F01 F01 . 
F 2 ZN B 1 802 802 ZN ZN . 
G 3 F01 B 1 902 902 F01 F01 . 
H 2 ZN C 1 803 803 ZN ZN . 
I 3 F01 C 1 903 903 F01 F01 . 
J 4 GPP C 1 904 0 GPP GPP . 
K 5 HOH A 1 902 902 HOH HOH . 
K 5 HOH A 2 903 903 HOH HOH . 
K 5 HOH A 3 904 904 HOH HOH . 
K 5 HOH A 4 905 905 HOH HOH . 
K 5 HOH A 5 906 906 HOH HOH . 
K 5 HOH A 6 907 907 HOH HOH . 
K 5 HOH A 7 908 908 HOH HOH . 
K 5 HOH A 8 909 909 HOH HOH . 
K 5 HOH A 9 910 910 HOH HOH . 
K 5 HOH A 10 911 911 HOH HOH . 
K 5 HOH A 11 912 912 HOH HOH . 
K 5 HOH A 12 913 913 HOH HOH . 
K 5 HOH A 13 914 914 HOH HOH . 
K 5 HOH A 14 915 915 HOH HOH . 
K 5 HOH A 15 916 916 HOH HOH . 
K 5 HOH A 16 917 917 HOH HOH . 
K 5 HOH A 17 918 918 HOH HOH . 
K 5 HOH A 18 919 919 HOH HOH . 
K 5 HOH A 19 920 920 HOH HOH . 
K 5 HOH A 20 921 921 HOH HOH . 
K 5 HOH A 21 922 922 HOH HOH . 
K 5 HOH A 22 923 923 HOH HOH . 
K 5 HOH A 23 924 924 HOH HOH . 
K 5 HOH A 24 925 925 HOH HOH . 
K 5 HOH A 25 926 926 HOH HOH . 
K 5 HOH A 26 927 927 HOH HOH . 
K 5 HOH A 27 928 928 HOH HOH . 
K 5 HOH A 28 929 929 HOH HOH . 
K 5 HOH A 29 930 930 HOH HOH . 
K 5 HOH A 30 931 931 HOH HOH . 
K 5 HOH A 31 932 932 HOH HOH . 
K 5 HOH A 32 933 933 HOH HOH . 
K 5 HOH A 33 934 934 HOH HOH . 
K 5 HOH A 34 935 935 HOH HOH . 
K 5 HOH A 35 936 936 HOH HOH . 
K 5 HOH A 36 937 937 HOH HOH . 
K 5 HOH A 37 938 938 HOH HOH . 
L 5 HOH B 1 903 903 HOH HOH . 
L 5 HOH B 2 904 904 HOH HOH . 
L 5 HOH B 3 905 905 HOH HOH . 
L 5 HOH B 4 906 906 HOH HOH . 
L 5 HOH B 5 907 907 HOH HOH . 
L 5 HOH B 6 908 908 HOH HOH . 
L 5 HOH B 7 909 909 HOH HOH . 
L 5 HOH B 8 910 910 HOH HOH . 
L 5 HOH B 9 911 911 HOH HOH . 
L 5 HOH B 10 912 912 HOH HOH . 
L 5 HOH B 11 913 913 HOH HOH . 
L 5 HOH B 12 914 914 HOH HOH . 
L 5 HOH B 13 915 915 HOH HOH . 
L 5 HOH B 14 916 916 HOH HOH . 
L 5 HOH B 15 917 917 HOH HOH . 
L 5 HOH B 16 918 918 HOH HOH . 
L 5 HOH B 17 919 919 HOH HOH . 
L 5 HOH B 18 920 920 HOH HOH . 
L 5 HOH B 19 921 921 HOH HOH . 
L 5 HOH B 20 922 922 HOH HOH . 
L 5 HOH B 21 923 923 HOH HOH . 
L 5 HOH B 22 924 924 HOH HOH . 
L 5 HOH B 23 925 925 HOH HOH . 
L 5 HOH B 24 926 926 HOH HOH . 
L 5 HOH B 25 927 927 HOH HOH . 
L 5 HOH B 26 928 928 HOH HOH . 
L 5 HOH B 27 929 929 HOH HOH . 
L 5 HOH B 28 930 930 HOH HOH . 
L 5 HOH B 29 931 931 HOH HOH . 
L 5 HOH B 30 932 932 HOH HOH . 
L 5 HOH B 31 933 933 HOH HOH . 
L 5 HOH B 32 934 934 HOH HOH . 
L 5 HOH B 33 935 935 HOH HOH . 
L 5 HOH B 34 936 936 HOH HOH . 
L 5 HOH B 35 937 937 HOH HOH . 
L 5 HOH B 36 938 938 HOH HOH . 
M 5 HOH C 1 905 904 HOH HOH . 
M 5 HOH C 2 906 905 HOH HOH . 
M 5 HOH C 3 907 906 HOH HOH . 
M 5 HOH C 4 908 907 HOH HOH . 
M 5 HOH C 5 909 908 HOH HOH . 
M 5 HOH C 6 910 909 HOH HOH . 
M 5 HOH C 7 911 910 HOH HOH . 
M 5 HOH C 8 912 911 HOH HOH . 
M 5 HOH C 9 913 912 HOH HOH . 
M 5 HOH C 10 914 913 HOH HOH . 
M 5 HOH C 11 915 914 HOH HOH . 
M 5 HOH C 12 916 915 HOH HOH . 
M 5 HOH C 13 917 916 HOH HOH . 
M 5 HOH C 14 918 917 HOH HOH . 
M 5 HOH C 15 919 918 HOH HOH . 
M 5 HOH C 16 920 919 HOH HOH . 
M 5 HOH C 17 921 920 HOH HOH . 
M 5 HOH C 18 922 921 HOH HOH . 
M 5 HOH C 19 923 922 HOH HOH . 
M 5 HOH C 20 924 923 HOH HOH . 
M 5 HOH C 21 925 924 HOH HOH . 
M 5 HOH C 22 926 925 HOH HOH . 
M 5 HOH C 23 927 926 HOH HOH . 
M 5 HOH C 24 928 927 HOH HOH . 
M 5 HOH C 25 929 928 HOH HOH . 
M 5 HOH C 26 930 929 HOH HOH . 
M 5 HOH C 27 931 930 HOH HOH . 
M 5 HOH C 28 932 931 HOH HOH . 
M 5 HOH C 29 933 932 HOH HOH . 
M 5 HOH C 30 934 933 HOH HOH . 
M 5 HOH C 31 935 934 HOH HOH . 
M 5 HOH C 32 936 935 HOH HOH . 
M 5 HOH C 33 937 936 HOH HOH . 
M 5 HOH C 34 938 937 HOH HOH . 
M 5 HOH C 35 939 938 HOH HOH . 
M 5 HOH C 36 940 939 HOH HOH . 
M 5 HOH C 37 941 940 HOH HOH . 
M 5 HOH C 38 942 941 HOH HOH . 
M 5 HOH C 39 943 942 HOH HOH . 
M 5 HOH C 40 944 943 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 F01 . . . E 3 33.489 5.929 42.169 1 48.84 ? O1 F01 901 A 1 
HETATM 2 C C6 F01 . . . E 3 34.077 5.188 41.384 1 48.06 ? C6 F01 901 A 1 
HETATM 3 N N1 F01 . . . E 3 35.116 5.719 40.631 1 46.25 ? N1 F01 901 A 1 
HETATM 4 C C7 F01 . . . E 3 35.799 4.941 39.736 1 45.52 ? C7 F01 901 A 1 
HETATM 5 N N2 F01 . . . E 3 36.778 5.486 39.041 1 46.33 ? N2 F01 901 A 1 
HETATM 6 C C8 F01 . . . E 3 35.466 3.614 39.575 1 45.89 ? C8 F01 901 A 1 
HETATM 7 F F1 F01 . . . E 3 36.147 2.877 38.683 1 47.54 ? F1 F01 901 A 1 
HETATM 8 C C9 F01 . . . E 3 34.439 3.044 40.314 1 46.31 ? C9 F01 901 A 1 
HETATM 9 N N3 F01 . . . E 3 33.719 3.833 41.236 1 48.06 ? N3 F01 901 A 1 
HETATM 10 C C1 F01 . . . E 3 32.625 3.251 42.057 1 47.66 ? C1 F01 901 A 1 
HETATM 11 O O4 F01 . . . E 3 33.206 2.004 42.509 1 46.36 ? O4 F01 901 A 1 
HETATM 12 C C4 F01 . . . E 3 32.203 0.978 42.381 1 49.26 ? C4 F01 901 A 1 
HETATM 13 C C5 F01 . . . E 3 32.899 -0.364 42.075 1 51.47 ? C5 F01 901 A 1 
HETATM 14 O O5 F01 . . . E 3 33.586 -0.316 40.799 1 54.21 ? O5 F01 901 A 1 
HETATM 15 C C3 F01 . . . E 3 31.389 1.399 41.166 1 49.32 ? C3 F01 901 A 1 
HETATM 16 O O3 F01 . . . E 3 30.105 0.831 41.227 1 49.6 ? O3 F01 901 A 1 
HETATM 17 C C2 F01 . . . E 3 31.325 2.907 41.322 1 49.6 ? C2 F01 901 A 1 
HETATM 18 O O2 F01 . . . E 3 30.222 3.25 42.154 1 53.45 ? O2 F01 901 A 1 
#
_model_server_stats.io_time_ms              61 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          18 
_model_server_stats.element_count           18 
#