data_3ELS # _model_server_result.job_id DM1kqnhotZTbzVq9odFCtA _model_server_result.datetime_utc '2025-02-05 07:45:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3els # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":207}' # _entry.id 3ELS # _exptl.entry_id 3ELS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3ELS _cell.length_a 100.613 _cell.length_b 100.613 _cell.length_c 102.196 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ELS _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 102.196 5 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 102.196 6 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 102.196 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B MG MG . A MG 1 1_555 A O ASP 82 A ASP 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc2 B MG MG . A MG 1 1_555 H O HOH . A HOH 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3ELS _atom_sites.fract_transf_matrix[1][1] 0.009939 _atom_sites.fract_transf_matrix[1][2] 0.005738 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011477 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009785 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 1 1 MG MG . C 3 CL A 1 205 1 CL CL . D 4 GOL A 1 206 1 GOL GOL . E 4 GOL A 1 207 1 GOL GOL . F 4 GOL A 1 208 1 GOL GOL . G 4 GOL A 1 209 1 GOL GOL . H 5 HOH A 1 210 1 HOH HOH . H 5 HOH A 2 211 2 HOH HOH . H 5 HOH A 3 212 3 HOH HOH . H 5 HOH A 4 213 4 HOH HOH . H 5 HOH A 5 214 5 HOH HOH . H 5 HOH A 6 215 6 HOH HOH . H 5 HOH A 7 216 7 HOH HOH . H 5 HOH A 8 217 8 HOH HOH . H 5 HOH A 9 218 9 HOH HOH . H 5 HOH A 10 219 10 HOH HOH . H 5 HOH A 11 220 11 HOH HOH . H 5 HOH A 12 221 12 HOH HOH . H 5 HOH A 13 222 13 HOH HOH . H 5 HOH A 14 223 14 HOH HOH . H 5 HOH A 15 224 15 HOH HOH . H 5 HOH A 16 225 16 HOH HOH . H 5 HOH A 17 226 17 HOH HOH . H 5 HOH A 18 227 18 HOH HOH . H 5 HOH A 19 228 19 HOH HOH . H 5 HOH A 20 229 20 HOH HOH . H 5 HOH A 21 230 21 HOH HOH . H 5 HOH A 22 231 22 HOH HOH . H 5 HOH A 23 232 23 HOH HOH . H 5 HOH A 24 233 24 HOH HOH . H 5 HOH A 25 234 25 HOH HOH . H 5 HOH A 26 235 26 HOH HOH . H 5 HOH A 27 236 27 HOH HOH . H 5 HOH A 28 237 28 HOH HOH . H 5 HOH A 29 238 29 HOH HOH . H 5 HOH A 30 239 30 HOH HOH . H 5 HOH A 31 240 31 HOH HOH . H 5 HOH A 32 241 32 HOH HOH . H 5 HOH A 33 242 33 HOH HOH . H 5 HOH A 34 243 34 HOH HOH . H 5 HOH A 35 244 35 HOH HOH . H 5 HOH A 36 245 36 HOH HOH . H 5 HOH A 37 246 37 HOH HOH . H 5 HOH A 38 247 38 HOH HOH . H 5 HOH A 39 248 39 HOH HOH . H 5 HOH A 40 249 40 HOH HOH . H 5 HOH A 41 250 41 HOH HOH . H 5 HOH A 42 251 42 HOH HOH . H 5 HOH A 43 252 43 HOH HOH . H 5 HOH A 44 253 44 HOH HOH . H 5 HOH A 45 254 45 HOH HOH . H 5 HOH A 46 255 46 HOH HOH . H 5 HOH A 47 256 47 HOH HOH . H 5 HOH A 48 257 48 HOH HOH . H 5 HOH A 49 258 49 HOH HOH . H 5 HOH A 50 259 50 HOH HOH . H 5 HOH A 51 260 51 HOH HOH . H 5 HOH A 52 261 52 HOH HOH . H 5 HOH A 53 262 53 HOH HOH . H 5 HOH A 54 263 54 HOH HOH . H 5 HOH A 55 264 55 HOH HOH . H 5 HOH A 56 265 56 HOH HOH . H 5 HOH A 57 266 57 HOH HOH . H 5 HOH A 58 267 58 HOH HOH . H 5 HOH A 59 268 59 HOH HOH . H 5 HOH A 60 269 60 HOH HOH . H 5 HOH A 61 270 61 HOH HOH . H 5 HOH A 62 271 62 HOH HOH . H 5 HOH A 63 272 63 HOH HOH . H 5 HOH A 64 273 64 HOH HOH . H 5 HOH A 65 274 65 HOH HOH . H 5 HOH A 66 275 66 HOH HOH . H 5 HOH A 67 276 67 HOH HOH . H 5 HOH A 68 277 68 HOH HOH . H 5 HOH A 69 278 69 HOH HOH . H 5 HOH A 70 279 70 HOH HOH . H 5 HOH A 71 280 71 HOH HOH . H 5 HOH A 72 281 72 HOH HOH . H 5 HOH A 73 282 73 HOH HOH . H 5 HOH A 74 283 74 HOH HOH . H 5 HOH A 75 284 75 HOH HOH . H 5 HOH A 76 285 76 HOH HOH . H 5 HOH A 77 286 77 HOH HOH . H 5 HOH A 78 287 78 HOH HOH . H 5 HOH A 79 288 79 HOH HOH . H 5 HOH A 80 289 80 HOH HOH . H 5 HOH A 81 290 81 HOH HOH . H 5 HOH A 82 291 82 HOH HOH . H 5 HOH A 83 292 83 HOH HOH . H 5 HOH A 84 293 84 HOH HOH . H 5 HOH A 85 294 85 HOH HOH . H 5 HOH A 86 295 86 HOH HOH . H 5 HOH A 87 296 87 HOH HOH . H 5 HOH A 88 297 88 HOH HOH . H 5 HOH A 89 298 89 HOH HOH . H 5 HOH A 90 299 90 HOH HOH . H 5 HOH A 91 300 91 HOH HOH . H 5 HOH A 92 301 92 HOH HOH . H 5 HOH A 93 302 93 HOH HOH . H 5 HOH A 94 303 94 HOH HOH . H 5 HOH A 95 304 95 HOH HOH . H 5 HOH A 96 305 96 HOH HOH . H 5 HOH A 97 306 97 HOH HOH . H 5 HOH A 98 307 98 HOH HOH . H 5 HOH A 99 308 99 HOH HOH . H 5 HOH A 100 309 100 HOH HOH . H 5 HOH A 101 310 101 HOH HOH . H 5 HOH A 102 311 102 HOH HOH . H 5 HOH A 103 312 103 HOH HOH . H 5 HOH A 104 313 104 HOH HOH . H 5 HOH A 105 314 105 HOH HOH . H 5 HOH A 106 315 106 HOH HOH . H 5 HOH A 107 316 107 HOH HOH . H 5 HOH A 108 317 108 HOH HOH . H 5 HOH A 109 318 109 HOH HOH . H 5 HOH A 110 319 110 HOH HOH . H 5 HOH A 111 320 111 HOH HOH . H 5 HOH A 112 321 112 HOH HOH . H 5 HOH A 113 322 113 HOH HOH . H 5 HOH A 114 323 114 HOH HOH . H 5 HOH A 115 324 115 HOH HOH . H 5 HOH A 116 325 116 HOH HOH . H 5 HOH A 117 326 117 HOH HOH . H 5 HOH A 118 327 118 HOH HOH . H 5 HOH A 119 328 119 HOH HOH . H 5 HOH A 120 329 120 HOH HOH . H 5 HOH A 121 330 121 HOH HOH . H 5 HOH A 122 331 122 HOH HOH . H 5 HOH A 123 332 123 HOH HOH . H 5 HOH A 124 333 124 HOH HOH . H 5 HOH A 125 334 125 HOH HOH . H 5 HOH A 126 335 126 HOH HOH . H 5 HOH A 127 336 127 HOH HOH . H 5 HOH A 128 337 128 HOH HOH . H 5 HOH A 129 338 129 HOH HOH . H 5 HOH A 130 339 130 HOH HOH . H 5 HOH A 131 340 131 HOH HOH . H 5 HOH A 132 341 132 HOH HOH . H 5 HOH A 133 342 133 HOH HOH . H 5 HOH A 134 343 134 HOH HOH . H 5 HOH A 135 344 135 HOH HOH . H 5 HOH A 136 345 136 HOH HOH . H 5 HOH A 137 346 137 HOH HOH . H 5 HOH A 138 347 138 HOH HOH . H 5 HOH A 139 348 139 HOH HOH . H 5 HOH A 140 349 140 HOH HOH . H 5 HOH A 141 350 141 HOH HOH . H 5 HOH A 142 351 142 HOH HOH . H 5 HOH A 143 352 143 HOH HOH . H 5 HOH A 144 353 144 HOH HOH . H 5 HOH A 145 354 145 HOH HOH . H 5 HOH A 146 355 146 HOH HOH . H 5 HOH A 147 356 147 HOH HOH . H 5 HOH A 148 357 148 HOH HOH . H 5 HOH A 149 358 149 HOH HOH . H 5 HOH A 150 359 150 HOH HOH . H 5 HOH A 151 360 151 HOH HOH . H 5 HOH A 152 361 152 HOH HOH . H 5 HOH A 153 362 153 HOH HOH . H 5 HOH A 154 363 154 HOH HOH . H 5 HOH A 155 364 155 HOH HOH . H 5 HOH A 156 365 156 HOH HOH . H 5 HOH A 157 366 157 HOH HOH . H 5 HOH A 158 367 158 HOH HOH . H 5 HOH A 159 368 159 HOH HOH . H 5 HOH A 160 369 160 HOH HOH . H 5 HOH A 161 370 161 HOH HOH . H 5 HOH A 162 371 162 HOH HOH . H 5 HOH A 163 372 163 HOH HOH . H 5 HOH A 164 373 164 HOH HOH . H 5 HOH A 165 374 165 HOH HOH . H 5 HOH A 166 375 166 HOH HOH . H 5 HOH A 167 376 167 HOH HOH . H 5 HOH A 168 377 168 HOH HOH . H 5 HOH A 169 378 169 HOH HOH . H 5 HOH A 170 379 170 HOH HOH . H 5 HOH A 171 380 171 HOH HOH . H 5 HOH A 172 381 172 HOH HOH . H 5 HOH A 173 382 173 HOH HOH . H 5 HOH A 174 383 174 HOH HOH . H 5 HOH A 175 384 175 HOH HOH . H 5 HOH A 176 385 176 HOH HOH . H 5 HOH A 177 386 177 HOH HOH . H 5 HOH A 178 387 178 HOH HOH . H 5 HOH A 179 388 179 HOH HOH . H 5 HOH A 180 389 180 HOH HOH . H 5 HOH A 181 390 181 HOH HOH . H 5 HOH A 182 391 182 HOH HOH . H 5 HOH A 183 392 183 HOH HOH . H 5 HOH A 184 393 184 HOH HOH . H 5 HOH A 185 394 185 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 1.426 30.797 48.676 1 45.48 ? C1 GOL 207 A 1 HETATM 2 O O1 GOL . . . E 4 1.536 30.715 47.274 1 46.16 ? O1 GOL 207 A 1 HETATM 3 C C2 GOL . . . E 4 0.006 30.399 49.046 1 45.7 ? C2 GOL 207 A 1 HETATM 4 O O2 GOL . . . E 4 -0.911 31.278 48.429 1 44.52 ? O2 GOL 207 A 1 HETATM 5 C C3 GOL . . . E 4 -0.175 30.421 50.556 1 44.77 ? C3 GOL 207 A 1 HETATM 6 O O3 GOL . . . E 4 -1.538 30.229 50.865 1 45.36 ? O3 GOL 207 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #