data_3ELY # _model_server_result.job_id NBSD4n68qqs13oGiaU5iog _model_server_result.datetime_utc '2024-10-12 19:21:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ely # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":887}' # _entry.id 3ELY # _exptl.entry_id 3ELY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3ELY _cell.length_a 49.715 _cell.length_b 66.436 _cell.length_c 91.055 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ELY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 293 n n N HN1 SAH sing 294 n n N HN2 SAH sing 295 n n CA CB SAH sing 296 n n CA C SAH sing 297 n n CA HA SAH sing 298 n n CB CG SAH sing 299 n n CB HB1 SAH sing 300 n n CB HB2 SAH sing 301 n n CG SD SAH sing 302 n n CG HG1 SAH sing 303 n n CG HG2 SAH sing 304 n n SD C5' SAH sing 305 n n C O SAH doub 306 n n C OXT SAH sing 307 n n OXT HXT SAH sing 308 n n C5' C4' SAH sing 309 n n C5' "H5'1" SAH sing 310 n n C5' "H5'2" SAH sing 311 n n C4' O4' SAH sing 312 n n C4' C3' SAH sing 313 n n C4' H4' SAH sing 314 n n O4' C1' SAH sing 315 n n C3' O3' SAH sing 316 n n C3' C2' SAH sing 317 n n C3' H3' SAH sing 318 n n O3' HO3' SAH sing 319 n n C2' O2' SAH sing 320 n n C2' C1' SAH sing 321 n n C2' H2' SAH sing 322 n n O2' HO2' SAH sing 323 n n C1' N9 SAH sing 324 n n C1' H1' SAH sing 325 n n N9 C8 SAH sing 326 n y N9 C4 SAH sing 327 n y C8 N7 SAH doub 328 n y C8 H8 SAH sing 329 n n N7 C5 SAH sing 330 n y C5 C6 SAH sing 331 n y C5 C4 SAH doub 332 n y C6 N6 SAH sing 333 n n C6 N1 SAH doub 334 n y N6 HN61 SAH sing 335 n n N6 HN62 SAH sing 336 n n N1 C2 SAH sing 337 n y C2 N3 SAH doub 338 n y C2 H2 SAH sing 339 n n N3 C4 SAH sing 340 n y # _atom_sites.entry_id 3ELY _atom_sites.fract_transf_matrix[1][1] 0.020115 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015052 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010982 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 293 1 SO4 SO4 . C 2 SO4 A 1 294 2 SO4 SO4 . D 2 SO4 A 1 295 3 SO4 SO4 . E 2 SO4 A 1 296 4 SO4 SO4 . F 2 SO4 A 1 297 5 SO4 SO4 . G 3 SAH A 1 887 887 SAH SAH . H 4 PEG A 1 5465 5465 PEG PEG . I 5 HOH A 1 5466 1 HOH HOH . I 5 HOH A 2 5467 2 HOH HOH . I 5 HOH A 3 5468 3 HOH HOH . I 5 HOH A 4 5469 4 HOH HOH . I 5 HOH A 5 5470 5 HOH HOH . I 5 HOH A 6 5471 6 HOH HOH . I 5 HOH A 7 5472 7 HOH HOH . I 5 HOH A 8 5473 9 HOH HOH . I 5 HOH A 9 5474 10 HOH HOH . I 5 HOH A 10 5475 11 HOH HOH . I 5 HOH A 11 5476 12 HOH HOH . I 5 HOH A 12 5477 13 HOH HOH . I 5 HOH A 13 5478 16 HOH HOH . I 5 HOH A 14 5479 17 HOH HOH . I 5 HOH A 15 5480 18 HOH HOH . I 5 HOH A 16 5481 19 HOH HOH . I 5 HOH A 17 5482 22 HOH HOH . I 5 HOH A 18 5483 23 HOH HOH . I 5 HOH A 19 5484 24 HOH HOH . I 5 HOH A 20 5485 26 HOH HOH . I 5 HOH A 21 5486 27 HOH HOH . I 5 HOH A 22 5487 29 HOH HOH . I 5 HOH A 23 5488 31 HOH HOH . I 5 HOH A 24 5489 32 HOH HOH . I 5 HOH A 25 5490 34 HOH HOH . I 5 HOH A 26 5491 35 HOH HOH . I 5 HOH A 27 5492 36 HOH HOH . I 5 HOH A 28 5493 37 HOH HOH . I 5 HOH A 29 5494 39 HOH HOH . I 5 HOH A 30 5495 40 HOH HOH . I 5 HOH A 31 5496 41 HOH HOH . I 5 HOH A 32 5497 43 HOH HOH . I 5 HOH A 33 5498 44 HOH HOH . I 5 HOH A 34 5499 47 HOH HOH . I 5 HOH A 35 5500 50 HOH HOH . I 5 HOH A 36 5501 51 HOH HOH . I 5 HOH A 37 5502 53 HOH HOH . I 5 HOH A 38 5503 54 HOH HOH . I 5 HOH A 39 5504 58 HOH HOH . I 5 HOH A 40 5505 59 HOH HOH . I 5 HOH A 41 5506 60 HOH HOH . I 5 HOH A 42 5507 63 HOH HOH . I 5 HOH A 43 5508 65 HOH HOH . I 5 HOH A 44 5509 66 HOH HOH . I 5 HOH A 45 5510 67 HOH HOH . I 5 HOH A 46 5511 69 HOH HOH . I 5 HOH A 47 5512 70 HOH HOH . I 5 HOH A 48 5513 71 HOH HOH . I 5 HOH A 49 5514 73 HOH HOH . I 5 HOH A 50 5515 79 HOH HOH . I 5 HOH A 51 5516 82 HOH HOH . I 5 HOH A 52 5517 83 HOH HOH . I 5 HOH A 53 5518 84 HOH HOH . I 5 HOH A 54 5519 87 HOH HOH . I 5 HOH A 55 5520 88 HOH HOH . I 5 HOH A 56 5521 90 HOH HOH . I 5 HOH A 57 5522 94 HOH HOH . I 5 HOH A 58 5523 96 HOH HOH . I 5 HOH A 59 5524 97 HOH HOH . I 5 HOH A 60 5525 100 HOH HOH . I 5 HOH A 61 5526 101 HOH HOH . I 5 HOH A 62 5527 102 HOH HOH . I 5 HOH A 63 5528 103 HOH HOH . I 5 HOH A 64 5529 105 HOH HOH . I 5 HOH A 65 5530 106 HOH HOH . I 5 HOH A 66 5531 107 HOH HOH . I 5 HOH A 67 5532 109 HOH HOH . I 5 HOH A 68 5533 112 HOH HOH . I 5 HOH A 69 5534 113 HOH HOH . I 5 HOH A 70 5535 115 HOH HOH . I 5 HOH A 71 5536 116 HOH HOH . I 5 HOH A 72 5537 117 HOH HOH . I 5 HOH A 73 5538 120 HOH HOH . I 5 HOH A 74 5539 121 HOH HOH . I 5 HOH A 75 5540 122 HOH HOH . I 5 HOH A 76 5541 124 HOH HOH . I 5 HOH A 77 5542 125 HOH HOH . I 5 HOH A 78 5543 126 HOH HOH . I 5 HOH A 79 5544 127 HOH HOH . I 5 HOH A 80 5545 128 HOH HOH . I 5 HOH A 81 5546 131 HOH HOH . I 5 HOH A 82 5547 889 HOH HOH . I 5 HOH A 83 5548 891 HOH HOH . I 5 HOH A 84 5549 892 HOH HOH . I 5 HOH A 85 5550 893 HOH HOH . I 5 HOH A 86 5551 894 HOH HOH . I 5 HOH A 87 5552 896 HOH HOH . I 5 HOH A 88 5553 897 HOH HOH . I 5 HOH A 89 5554 898 HOH HOH . I 5 HOH A 90 5555 899 HOH HOH . I 5 HOH A 91 5556 901 HOH HOH . I 5 HOH A 92 5557 902 HOH HOH . I 5 HOH A 93 5558 903 HOH HOH . I 5 HOH A 94 5559 905 HOH HOH . I 5 HOH A 95 5560 908 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . G 3 -23.417 -2.85 9.071 1 23.63 ? N SAH 887 A 1 HETATM 2 C CA SAH . . . G 3 -23.89 -1.474 8.769 1 26.63 ? CA SAH 887 A 1 HETATM 3 C CB SAH . . . G 3 -23.95 -0.683 10.071 1 26.96 ? CB SAH 887 A 1 HETATM 4 C CG SAH . . . G 3 -25.378 -0.771 10.597 1 29.64 ? CG SAH 887 A 1 HETATM 5 S SD SAH . . . G 3 -25.554 0.248 12.011 1 36.18 ? SD SAH 887 A 1 HETATM 6 C C SAH . . . G 3 -23.029 -0.768 7.755 1 28.27 ? C SAH 887 A 1 HETATM 7 O O SAH . . . G 3 -21.959 -1.257 7.376 1 27.35 ? O SAH 887 A 1 HETATM 8 O OXT SAH . . . G 3 -23.377 0.318 7.276 1 26.5 ? OXT SAH 887 A 1 HETATM 9 C C5' SAH . . . G 3 -26.935 -0.472 12.843 1 33.64 ? C5' SAH 887 A 1 HETATM 10 C C4' SAH . . . G 3 -28.225 0.169 12.349 1 30.92 ? C4' SAH 887 A 1 HETATM 11 O O4' SAH . . . G 3 -29.348 -0.551 12.845 1 28.17 ? O4' SAH 887 A 1 HETATM 12 C C3' SAH . . . G 3 -28.414 1.613 12.803 1 30.12 ? C3' SAH 887 A 1 HETATM 13 O O3' SAH . . . G 3 -28.438 2.437 11.634 1 27.17 ? O3' SAH 887 A 1 HETATM 14 C C2' SAH . . . G 3 -29.768 1.661 13.48 1 28.8 ? C2' SAH 887 A 1 HETATM 15 O O2' SAH . . . G 3 -30.531 2.766 13.005 1 23.87 ? O2' SAH 887 A 1 HETATM 16 C C1' SAH . . . G 3 -30.423 0.375 13.002 1 30.49 ? C1' SAH 887 A 1 HETATM 17 N N9 SAH . . . G 3 -31.435 -0.199 13.924 1 30.53 ? N9 SAH 887 A 1 HETATM 18 C C8 SAH . . . G 3 -31.377 -0.259 15.264 1 30.57 ? C8 SAH 887 A 1 HETATM 19 N N7 SAH . . . G 3 -32.489 -0.883 15.716 1 31.49 ? N7 SAH 887 A 1 HETATM 20 C C5 SAH . . . G 3 -33.24 -1.214 14.643 1 29.93 ? C5 SAH 887 A 1 HETATM 21 C C6 SAH . . . G 3 -34.463 -1.852 14.484 1 29.92 ? C6 SAH 887 A 1 HETATM 22 N N6 SAH . . . G 3 -35.155 -2.284 15.564 1 31.79 ? N6 SAH 887 A 1 HETATM 23 N N1 SAH . . . G 3 -34.958 -2.038 13.24 1 30.06 ? N1 SAH 887 A 1 HETATM 24 C C2 SAH . . . G 3 -34.281 -1.614 12.158 1 28.02 ? C2 SAH 887 A 1 HETATM 25 N N3 SAH . . . G 3 -33.107 -0.99 12.286 1 22.86 ? N3 SAH 887 A 1 HETATM 26 C C4 SAH . . . G 3 -32.568 -0.78 13.514 1 28.17 ? C4 SAH 887 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 26 #