data_3EM4 # _model_server_result.job_id ypIipwSb_Pi4wcr7FkFfgA _model_server_result.datetime_utc '2024-11-25 09:26:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3em4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":501}' # _entry.id 3EM4 # _exptl.entry_id 3EM4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 82.22 _cell.angle_gamma 90 _cell.entry_id 3EM4 _cell.length_a 51.231 _cell.length_b 59.54 _cell.length_c 59.863 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EM4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,N,O 1 1 C,D,J,K,L,M,P,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 L N N ? 3 M N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 365 n n P O2 PO4 sing 366 n n P O3 PO4 sing 367 n n P O4 PO4 sing 368 n n # _atom_sites.entry_id 3EM4 _atom_sites.fract_transf_matrix[1][1] 0.019519 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] -0.002667 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016795 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01686 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 DR7 A 1 100 1 DR7 DR7 . F 3 PO4 A 1 502 502 PO4 PO4 . G 3 PO4 B 1 501 501 PO4 PO4 . H 3 PO4 B 1 504 504 PO4 PO4 . I 3 PO4 B 1 505 505 PO4 PO4 . J 3 PO4 U 1 503 503 PO4 PO4 . K 2 DR7 V 1 100 1 DR7 DR7 . L 3 PO4 V 1 506 506 PO4 PO4 . M 3 PO4 V 1 507 507 PO4 PO4 . N 4 HOH A 1 504 77 HOH HOH . N 4 HOH A 2 505 78 HOH HOH . N 4 HOH A 3 506 79 HOH HOH . N 4 HOH A 4 507 80 HOH HOH . N 4 HOH A 5 508 94 HOH HOH . N 4 HOH A 6 509 96 HOH HOH . N 4 HOH A 7 510 97 HOH HOH . N 4 HOH A 8 511 102 HOH HOH . N 4 HOH A 9 512 103 HOH HOH . N 4 HOH A 10 513 104 HOH HOH . N 4 HOH A 11 514 109 HOH HOH . N 4 HOH A 12 515 118 HOH HOH . N 4 HOH A 13 516 123 HOH HOH . N 4 HOH A 14 517 124 HOH HOH . N 4 HOH A 15 518 125 HOH HOH . N 4 HOH A 16 519 127 HOH HOH . N 4 HOH A 17 520 128 HOH HOH . N 4 HOH A 18 521 129 HOH HOH . N 4 HOH A 19 522 130 HOH HOH . N 4 HOH A 20 523 152 HOH HOH . N 4 HOH A 21 524 155 HOH HOH . N 4 HOH A 22 525 157 HOH HOH . N 4 HOH A 23 526 33 HOH HOH . N 4 HOH A 24 527 39 HOH HOH . N 4 HOH A 25 528 47 HOH HOH . N 4 HOH A 26 529 26 HOH HOH . N 4 HOH A 27 530 28 HOH HOH . N 4 HOH A 28 531 30 HOH HOH . N 4 HOH A 29 532 71 HOH HOH . N 4 HOH A 30 533 75 HOH HOH . N 4 HOH A 31 534 76 HOH HOH . O 4 HOH B 1 506 17 HOH HOH . O 4 HOH B 2 507 81 HOH HOH . O 4 HOH B 3 508 95 HOH HOH . O 4 HOH B 4 509 153 HOH HOH . O 4 HOH B 5 510 1 HOH HOH . O 4 HOH B 6 511 13 HOH HOH . O 4 HOH B 7 512 14 HOH HOH . O 4 HOH B 8 513 21 HOH HOH . O 4 HOH B 9 514 34 HOH HOH . O 4 HOH B 10 515 35 HOH HOH . O 4 HOH B 11 516 36 HOH HOH . O 4 HOH B 12 517 38 HOH HOH . O 4 HOH B 13 518 41 HOH HOH . O 4 HOH B 14 519 50 HOH HOH . O 4 HOH B 15 520 106 HOH HOH . O 4 HOH B 16 521 107 HOH HOH . O 4 HOH B 17 522 108 HOH HOH . O 4 HOH B 18 523 110 HOH HOH . O 4 HOH B 19 524 117 HOH HOH . O 4 HOH B 20 525 122 HOH HOH . O 4 HOH B 21 526 132 HOH HOH . O 4 HOH B 22 527 133 HOH HOH . O 4 HOH B 23 528 134 HOH HOH . O 4 HOH B 24 529 135 HOH HOH . O 4 HOH B 25 530 137 HOH HOH . O 4 HOH B 26 531 138 HOH HOH . O 4 HOH B 27 532 139 HOH HOH . O 4 HOH B 28 533 140 HOH HOH . O 4 HOH B 29 534 141 HOH HOH . O 4 HOH B 30 535 142 HOH HOH . O 4 HOH B 31 536 143 HOH HOH . O 4 HOH B 32 537 145 HOH HOH . O 4 HOH B 33 538 146 HOH HOH . O 4 HOH B 34 539 149 HOH HOH . O 4 HOH B 35 540 164 HOH HOH . O 4 HOH B 36 541 171 HOH HOH . O 4 HOH B 37 542 10 HOH HOH . O 4 HOH B 38 543 46 HOH HOH . O 4 HOH B 39 544 48 HOH HOH . O 4 HOH B 40 545 23 HOH HOH . O 4 HOH B 41 546 29 HOH HOH . O 4 HOH B 42 547 63 HOH HOH . O 4 HOH B 43 548 64 HOH HOH . O 4 HOH B 44 549 65 HOH HOH . O 4 HOH B 45 550 67 HOH HOH . O 4 HOH B 46 551 68 HOH HOH . P 4 HOH U 1 518 99 HOH HOH . P 4 HOH U 2 519 40 HOH HOH . P 4 HOH U 3 520 42 HOH HOH . P 4 HOH U 4 521 150 HOH HOH . P 4 HOH U 5 522 162 HOH HOH . P 4 HOH U 6 523 163 HOH HOH . P 4 HOH U 7 524 166 HOH HOH . P 4 HOH U 8 525 2 HOH HOH . P 4 HOH U 9 526 3 HOH HOH . P 4 HOH U 10 527 4 HOH HOH . P 4 HOH U 11 528 6 HOH HOH . P 4 HOH U 12 529 9 HOH HOH . P 4 HOH U 13 530 11 HOH HOH . P 4 HOH U 14 531 12 HOH HOH . P 4 HOH U 15 532 16 HOH HOH . P 4 HOH U 16 533 19 HOH HOH . P 4 HOH U 17 534 44 HOH HOH . P 4 HOH U 18 535 45 HOH HOH . P 4 HOH U 19 536 49 HOH HOH . P 4 HOH U 20 537 53 HOH HOH . P 4 HOH U 21 538 55 HOH HOH . P 4 HOH U 22 539 56 HOH HOH . P 4 HOH U 23 540 57 HOH HOH . P 4 HOH U 24 541 59 HOH HOH . P 4 HOH U 25 542 60 HOH HOH . P 4 HOH U 26 543 88 HOH HOH . P 4 HOH U 27 544 89 HOH HOH . P 4 HOH U 28 545 90 HOH HOH . P 4 HOH U 29 546 92 HOH HOH . P 4 HOH U 30 547 111 HOH HOH . P 4 HOH U 31 548 112 HOH HOH . P 4 HOH U 32 549 113 HOH HOH . P 4 HOH U 33 550 115 HOH HOH . P 4 HOH U 34 551 119 HOH HOH . P 4 HOH U 35 552 120 HOH HOH . P 4 HOH U 36 553 121 HOH HOH . P 4 HOH U 37 554 126 HOH HOH . P 4 HOH U 38 555 22 HOH HOH . P 4 HOH U 39 556 24 HOH HOH . P 4 HOH U 40 557 27 HOH HOH . P 4 HOH U 41 558 69 HOH HOH . P 4 HOH U 42 559 72 HOH HOH . P 4 HOH U 43 560 74 HOH HOH . Q 4 HOH V 1 509 82 HOH HOH . Q 4 HOH V 2 510 83 HOH HOH . Q 4 HOH V 3 511 84 HOH HOH . Q 4 HOH V 4 512 85 HOH HOH . Q 4 HOH V 5 513 98 HOH HOH . Q 4 HOH V 6 514 131 HOH HOH . Q 4 HOH V 7 515 37 HOH HOH . Q 4 HOH V 8 516 43 HOH HOH . Q 4 HOH V 9 517 105 HOH HOH . Q 4 HOH V 10 518 161 HOH HOH . Q 4 HOH V 11 519 5 HOH HOH . Q 4 HOH V 12 520 7 HOH HOH . Q 4 HOH V 13 521 8 HOH HOH . Q 4 HOH V 14 522 52 HOH HOH . Q 4 HOH V 15 523 54 HOH HOH . Q 4 HOH V 16 524 58 HOH HOH . Q 4 HOH V 17 525 61 HOH HOH . Q 4 HOH V 18 526 62 HOH HOH . Q 4 HOH V 19 527 86 HOH HOH . Q 4 HOH V 20 528 87 HOH HOH . Q 4 HOH V 21 529 91 HOH HOH . Q 4 HOH V 22 530 93 HOH HOH . Q 4 HOH V 23 531 15 HOH HOH . Q 4 HOH V 24 532 18 HOH HOH . Q 4 HOH V 25 533 20 HOH HOH . Q 4 HOH V 26 534 25 HOH HOH . Q 4 HOH V 27 535 31 HOH HOH . Q 4 HOH V 28 536 32 HOH HOH . Q 4 HOH V 29 537 51 HOH HOH . Q 4 HOH V 30 538 66 HOH HOH . Q 4 HOH V 31 539 70 HOH HOH . Q 4 HOH V 32 540 73 HOH HOH . Q 4 HOH V 33 541 100 HOH HOH . Q 4 HOH V 34 542 101 HOH HOH . Q 4 HOH V 35 543 114 HOH HOH . Q 4 HOH V 36 544 116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . G 3 -16.537 9.093 34.48 1 92.85 ? P PO4 501 B 1 HETATM 2 O O1 PO4 . . . G 3 -15.927 8.147 35.494 1 92.3 ? O1 PO4 501 B 1 HETATM 3 O O2 PO4 . . . G 3 -16.058 8.666 33.11 1 92.13 ? O2 PO4 501 B 1 HETATM 4 O O3 PO4 . . . G 3 -18.051 9.054 34.533 1 92.98 ? O3 PO4 501 B 1 HETATM 5 O O4 PO4 . . . G 3 -16.078 10.509 34.745 1 92.53 ? O4 PO4 501 B 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 5 #