data_3EM6 # _model_server_result.job_id dYduJUUGSKWYuRdKNAsotQ _model_server_result.datetime_utc '2024-11-04 22:59:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3em6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":200}' # _entry.id 3EM6 # _exptl.entry_id 3EM6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details Darunavir _entity.formula_weight 547.664 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3EM6 _cell.length_a 51.14 _cell.length_b 57.891 _cell.length_c 61.364 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EM6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H37 N3 O7 S' _chem_comp.formula_weight 547.664 _chem_comp.id 017 _chem_comp.mon_nstd_flag . _chem_comp.name (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Darunavir;TMC114;UIC-94017 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 017 sing 1 n n N1 H11 017 sing 2 n n N1 H12 017 sing 3 n n C2 C3 017 doub 4 n y C2 C7 017 sing 5 n y C3 C4 017 sing 6 n y C3 H3 017 sing 7 n n C4 C5 017 doub 8 n y C4 H4 017 sing 9 n n C5 C6 017 sing 10 n y C5 S8 017 sing 11 n n C6 C7 017 doub 12 n y C6 H6 017 sing 13 n n C7 H7 017 sing 14 n n S8 O9 017 doub 15 n n S8 O10 017 doub 16 n n S8 N11 017 sing 17 n n N11 C12 017 sing 18 n n N11 C16 017 sing 19 n n C12 C13 017 sing 20 n n C12 H121 017 sing 21 n n C12 H122 017 sing 22 n n C13 C14 017 sing 23 n n C13 C15 017 sing 24 n n C13 H13 017 sing 25 n n C14 H141 017 sing 26 n n C14 H142 017 sing 27 n n C14 H143 017 sing 28 n n C15 H151 017 sing 29 n n C15 H152 017 sing 30 n n C15 H153 017 sing 31 n n C16 C17 017 sing 32 n n C16 H161 017 sing 33 n n C16 H162 017 sing 34 n n C17 O18 017 sing 35 n n C17 C19 017 sing 36 n n C17 H17 017 sing 37 n n O18 H18 017 sing 38 n n C19 N20 017 sing 39 n n C19 C32 017 sing 40 n n C19 H19 017 sing 41 n n N20 C21 017 sing 42 n n N20 H20 017 sing 43 n n C21 O22 017 doub 44 n n C21 O23 017 sing 45 n n O23 C24 017 sing 46 n n C24 C25 017 sing 47 n n C24 C31 017 sing 48 n n C24 H24 017 sing 49 n n C25 O26 017 sing 50 n n C25 H251 017 sing 51 n n C25 H252 017 sing 52 n n O26 C27 017 sing 53 n n C27 O28 017 sing 54 n n C27 C31 017 sing 55 n n C27 H27 017 sing 56 n n O28 C29 017 sing 57 n n C29 C30 017 sing 58 n n C29 H291 017 sing 59 n n C29 H292 017 sing 60 n n C30 C31 017 sing 61 n n C30 H301 017 sing 62 n n C30 H302 017 sing 63 n n C31 H31 017 sing 64 n n C32 C38 017 sing 65 n n C32 H321 017 sing 66 n n C32 H322 017 sing 67 n n C33 C34 017 doub 68 n y C33 C38 017 sing 69 n y C33 H33 017 sing 70 n n C34 C35 017 sing 71 n y C34 H34 017 sing 72 n n C35 C36 017 doub 73 n y C35 H35 017 sing 74 n n C36 C37 017 sing 75 n y C36 H36 017 sing 76 n n C37 C38 017 doub 77 n y C37 H37 017 sing 78 n n # _atom_sites.entry_id 3EM6 _atom_sites.fract_transf_matrix[1][1] 0.019554 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017274 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016296 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 017 A 1 200 200 017 017 . D 3 PO4 A 1 502 502 PO4 PO4 . E 3 PO4 A 1 504 504 PO4 PO4 . F 3 PO4 A 1 505 505 PO4 PO4 . G 4 ACT A 1 606 606 ACT ACT . H 3 PO4 B 1 503 503 PO4 PO4 . I 3 PO4 B 1 506 506 PO4 PO4 . J 4 ACT B 1 603 603 ACT ACT . K 4 ACT B 1 605 605 ACT ACT . L 5 HOH A 1 308 308 HOH HOH . L 5 HOH A 2 344 344 HOH HOH . L 5 HOH A 3 607 1 HOH HOH . L 5 HOH A 4 608 2 HOH HOH . L 5 HOH A 5 611 6 HOH HOH . L 5 HOH A 6 613 9 HOH HOH . L 5 HOH A 7 614 10 HOH HOH . L 5 HOH A 8 615 11 HOH HOH . L 5 HOH A 9 616 12 HOH HOH . L 5 HOH A 10 617 14 HOH HOH . L 5 HOH A 11 619 18 HOH HOH . L 5 HOH A 12 620 19 HOH HOH . L 5 HOH A 13 621 20 HOH HOH . L 5 HOH A 14 622 21 HOH HOH . L 5 HOH A 15 623 22 HOH HOH . L 5 HOH A 16 624 23 HOH HOH . L 5 HOH A 17 629 28 HOH HOH . L 5 HOH A 18 630 29 HOH HOH . L 5 HOH A 19 633 32 HOH HOH . L 5 HOH A 20 634 33 HOH HOH . L 5 HOH A 21 635 34 HOH HOH . L 5 HOH A 22 636 35 HOH HOH . L 5 HOH A 23 638 37 HOH HOH . L 5 HOH A 24 640 39 HOH HOH . L 5 HOH A 25 641 40 HOH HOH . L 5 HOH A 26 642 42 HOH HOH . L 5 HOH A 27 645 45 HOH HOH . L 5 HOH A 28 646 46 HOH HOH . L 5 HOH A 29 648 48 HOH HOH . L 5 HOH A 30 649 49 HOH HOH . L 5 HOH A 31 650 50 HOH HOH . L 5 HOH A 32 652 52 HOH HOH . L 5 HOH A 33 653 53 HOH HOH . L 5 HOH A 34 654 54 HOH HOH . L 5 HOH A 35 655 55 HOH HOH . L 5 HOH A 36 656 56 HOH HOH . L 5 HOH A 37 657 57 HOH HOH . L 5 HOH A 38 659 59 HOH HOH . L 5 HOH A 39 660 60 HOH HOH . L 5 HOH A 40 661 61 HOH HOH . L 5 HOH A 41 662 62 HOH HOH . L 5 HOH A 42 663 63 HOH HOH . L 5 HOH A 43 664 64 HOH HOH . L 5 HOH A 44 666 300 HOH HOH . L 5 HOH A 45 668 302 HOH HOH . L 5 HOH A 46 669 303 HOH HOH . L 5 HOH A 47 670 304 HOH HOH . L 5 HOH A 48 671 309 HOH HOH . L 5 HOH A 49 672 310 HOH HOH . L 5 HOH A 50 673 311 HOH HOH . L 5 HOH A 51 674 312 HOH HOH . L 5 HOH A 52 675 315 HOH HOH . L 5 HOH A 53 676 316 HOH HOH . L 5 HOH A 54 677 317 HOH HOH . L 5 HOH A 55 678 318 HOH HOH . L 5 HOH A 56 679 319 HOH HOH . L 5 HOH A 57 682 323 HOH HOH . L 5 HOH A 58 683 324 HOH HOH . L 5 HOH A 59 684 325 HOH HOH . L 5 HOH A 60 687 329 HOH HOH . L 5 HOH A 61 688 332 HOH HOH . L 5 HOH A 62 689 333 HOH HOH . L 5 HOH A 63 690 334 HOH HOH . L 5 HOH A 64 691 352 HOH HOH . L 5 HOH A 65 692 353 HOH HOH . L 5 HOH A 66 693 403 HOH HOH . L 5 HOH A 67 694 404 HOH HOH . L 5 HOH A 68 695 405 HOH HOH . L 5 HOH A 69 696 406 HOH HOH . L 5 HOH A 70 697 407 HOH HOH . L 5 HOH A 71 698 408 HOH HOH . L 5 HOH A 72 699 409 HOH HOH . L 5 HOH A 73 700 413 HOH HOH . M 5 HOH B 1 335 335 HOH HOH . M 5 HOH B 2 339 339 HOH HOH . M 5 HOH B 3 341 341 HOH HOH . M 5 HOH B 4 342 342 HOH HOH . M 5 HOH B 5 347 347 HOH HOH . M 5 HOH B 6 350 350 HOH HOH . M 5 HOH B 7 354 354 HOH HOH . M 5 HOH B 8 355 355 HOH HOH . M 5 HOH B 9 356 356 HOH HOH . M 5 HOH B 10 401 401 HOH HOH . M 5 HOH B 11 402 402 HOH HOH . M 5 HOH B 12 410 410 HOH HOH . M 5 HOH B 13 609 3 HOH HOH . M 5 HOH B 14 610 5 HOH HOH . M 5 HOH B 15 612 8 HOH HOH . M 5 HOH B 16 618 15 HOH HOH . M 5 HOH B 17 625 24 HOH HOH . M 5 HOH B 18 626 25 HOH HOH . M 5 HOH B 19 627 26 HOH HOH . M 5 HOH B 20 628 27 HOH HOH . M 5 HOH B 21 631 30 HOH HOH . M 5 HOH B 22 632 31 HOH HOH . M 5 HOH B 23 637 36 HOH HOH . M 5 HOH B 24 639 38 HOH HOH . M 5 HOH B 25 643 43 HOH HOH . M 5 HOH B 26 644 44 HOH HOH . M 5 HOH B 27 647 47 HOH HOH . M 5 HOH B 28 651 51 HOH HOH . M 5 HOH B 29 658 58 HOH HOH . M 5 HOH B 30 665 66 HOH HOH . M 5 HOH B 31 667 301 HOH HOH . M 5 HOH B 32 680 320 HOH HOH . M 5 HOH B 33 681 321 HOH HOH . M 5 HOH B 34 685 326 HOH HOH . M 5 HOH B 35 686 327 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 017 . . . C 2 14.394 -5.97 13.315 1 2 ? N1 017 200 A 1 HETATM 2 C C2 017 . . . C 2 15.343 -5.38 14.08 1 2 ? C2 017 200 A 1 HETATM 3 C C3 017 . . . C 2 16.465 -6.098 14.488 1 2 ? C3 017 200 A 1 HETATM 4 C C4 017 . . . C 2 17.434 -5.481 15.277 1 2 ? C4 017 200 A 1 HETATM 5 C C5 017 . . . C 2 17.277 -4.158 15.688 1 2 ? C5 017 200 A 1 HETATM 6 C C6 017 . . . C 2 16.155 -3.452 15.257 1 2 ? C6 017 200 A 1 HETATM 7 C C7 017 . . . C 2 15.18 -4.061 14.474 1 2 ? C7 017 200 A 1 HETATM 8 S S8 017 . . . C 2 18.393 -3.403 16.557 1 2 ? S8 017 200 A 1 HETATM 9 O O9 017 . . . C 2 19.055 -4.32 17.437 1 2 ? O9 017 200 A 1 HETATM 10 O O10 017 . . . C 2 17.712 -2.356 17.34 1 2 ? O10 017 200 A 1 HETATM 11 N N11 017 . . . C 2 19.241 -2.863 15.402 1 2 ? N11 017 200 A 1 HETATM 12 C C12 017 . . . C 2 20.122 -3.736 14.618 1 2 ? C12 017 200 A 1 HETATM 13 C C13 017 . . . C 2 21.588 -3.488 14.991 1 2 ? C13 017 200 A 1 HETATM 14 C C14 017 . . . C 2 21.995 -3.672 16.45 1 2 ? C14 017 200 A 1 HETATM 15 C C15 017 . . . C 2 22.437 -4.369 14.072 1 2 ? C15 017 200 A 1 HETATM 16 C C16 017 . . . C 2 19.053 -1.491 14.943 1 2 ? C16 017 200 A 1 HETATM 17 C C17 017 . . . C 2 20.091 -0.514 15.485 1 2 ? C17 017 200 A 1 HETATM 18 O O18 017 . . . C 2 20.098 0.625 14.63 1 2 ? O18 017 200 A 1 HETATM 19 C C19 017 . . . C 2 19.847 -0.083 16.928 1 2 ? C19 017 200 A 1 HETATM 20 N N20 017 . . . C 2 20.98 0.738 17.295 1 2 ? N20 017 200 A 1 HETATM 21 C C21 017 . . . C 2 21.897 0.442 18.21 1 2 ? C21 017 200 A 1 HETATM 22 O O22 017 . . . C 2 22.002 -0.608 18.819 1 2 ? O22 017 200 A 1 HETATM 23 O O23 017 . . . C 2 22.85 1.515 18.424 1 2 ? O23 017 200 A 1 HETATM 24 C C24 017 . . . C 2 23.726 1.426 19.541 1 2 ? C24 017 200 A 1 HETATM 25 C C25 017 . . . C 2 25.056 1.973 19.058 1 2 ? C25 017 200 A 1 HETATM 26 O O26 017 . . . C 2 24.946 3.385 19.236 1 2 ? O26 017 200 A 1 HETATM 27 C C27 017 . . . C 2 24.015 3.681 20.286 1 2 ? C27 017 200 A 1 HETATM 28 O O28 017 . . . C 2 23.004 4.602 19.871 1 2 ? O28 017 200 A 1 HETATM 29 C C29 017 . . . C 2 21.695 4.033 19.973 1 2 ? C29 017 200 A 1 HETATM 30 C C30 017 . . . C 2 21.833 2.718 20.722 1 2 ? C30 017 200 A 1 HETATM 31 C C31 017 . . . C 2 23.314 2.384 20.643 1 2 ? C31 017 200 A 1 HETATM 32 C C32 017 . . . C 2 18.55 0.707 17.098 1 2 ? C32 017 200 A 1 HETATM 33 C C33 017 . . . C 2 18.422 2.534 18.83 1 2 ? C33 017 200 A 1 HETATM 34 C C34 017 . . . C 2 18.258 2.957 20.142 1 2 ? C34 017 200 A 1 HETATM 35 C C35 017 . . . C 2 18.049 2.03 21.157 1 2 ? C35 017 200 A 1 HETATM 36 C C36 017 . . . C 2 18.012 0.675 20.853 1 2 ? C36 017 200 A 1 HETATM 37 C C37 017 . . . C 2 18.17 0.247 19.538 1 2 ? C37 017 200 A 1 HETATM 38 C C38 017 . . . C 2 18.383 1.175 18.526 1 2 ? C38 017 200 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 38 #