data_3EMM # _model_server_result.job_id g_7aQ1lQF-RQIqTrfKOB1g _model_server_result.datetime_utc '2024-11-27 07:59:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3emm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":3318}' # _entry.id 3EMM # _exptl.entry_id 3EMM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3EMM _cell.length_a 59.749 _cell.length_b 79.732 _cell.length_c 36.971 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EMM _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1,2 A,B,C,D 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 158 A HIS 158 1_555 B FE HEM . A HEM 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc2 B FE HEM . A HEM 200 1_555 D O HOH . A HOH 3432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 3EMM _atom_sites.fract_transf_matrix[1][1] 0.016737 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012542 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027048 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 200 200 HEM HEM . C 3 EDO A 1 3318 3318 EDO EDO . D 4 HOH A 1 3319 1 HOH HOH . D 4 HOH A 2 3320 2 HOH HOH . D 4 HOH A 3 3321 3 HOH HOH . D 4 HOH A 4 3322 4 HOH HOH . D 4 HOH A 5 3323 5 HOH HOH . D 4 HOH A 6 3324 6 HOH HOH . D 4 HOH A 7 3325 7 HOH HOH . D 4 HOH A 8 3326 8 HOH HOH . D 4 HOH A 9 3327 9 HOH HOH . D 4 HOH A 10 3328 10 HOH HOH . D 4 HOH A 11 3329 11 HOH HOH . D 4 HOH A 12 3330 12 HOH HOH . D 4 HOH A 13 3331 13 HOH HOH . D 4 HOH A 14 3332 14 HOH HOH . D 4 HOH A 15 3333 15 HOH HOH . D 4 HOH A 16 3334 16 HOH HOH . D 4 HOH A 17 3335 17 HOH HOH . D 4 HOH A 18 3336 18 HOH HOH . D 4 HOH A 19 3337 19 HOH HOH . D 4 HOH A 20 3338 20 HOH HOH . D 4 HOH A 21 3339 21 HOH HOH . D 4 HOH A 22 3340 22 HOH HOH . D 4 HOH A 23 3341 23 HOH HOH . D 4 HOH A 24 3342 24 HOH HOH . D 4 HOH A 25 3343 25 HOH HOH . D 4 HOH A 26 3344 26 HOH HOH . D 4 HOH A 27 3345 27 HOH HOH . D 4 HOH A 28 3346 28 HOH HOH . D 4 HOH A 29 3347 29 HOH HOH . D 4 HOH A 30 3348 30 HOH HOH . D 4 HOH A 31 3349 31 HOH HOH . D 4 HOH A 32 3350 32 HOH HOH . D 4 HOH A 33 3351 33 HOH HOH . D 4 HOH A 34 3352 34 HOH HOH . D 4 HOH A 35 3353 36 HOH HOH . D 4 HOH A 36 3354 37 HOH HOH . D 4 HOH A 37 3355 38 HOH HOH . D 4 HOH A 38 3356 39 HOH HOH . D 4 HOH A 39 3357 40 HOH HOH . D 4 HOH A 40 3358 41 HOH HOH . D 4 HOH A 41 3359 42 HOH HOH . D 4 HOH A 42 3360 43 HOH HOH . D 4 HOH A 43 3361 44 HOH HOH . D 4 HOH A 44 3362 45 HOH HOH . D 4 HOH A 45 3363 46 HOH HOH . D 4 HOH A 46 3364 47 HOH HOH . D 4 HOH A 47 3365 48 HOH HOH . D 4 HOH A 48 3366 49 HOH HOH . D 4 HOH A 49 3367 50 HOH HOH . D 4 HOH A 50 3368 51 HOH HOH . D 4 HOH A 51 3369 52 HOH HOH . D 4 HOH A 52 3370 53 HOH HOH . D 4 HOH A 53 3371 54 HOH HOH . D 4 HOH A 54 3372 55 HOH HOH . D 4 HOH A 55 3373 56 HOH HOH . D 4 HOH A 56 3374 57 HOH HOH . D 4 HOH A 57 3375 58 HOH HOH . D 4 HOH A 58 3376 59 HOH HOH . D 4 HOH A 59 3377 60 HOH HOH . D 4 HOH A 60 3378 61 HOH HOH . D 4 HOH A 61 3379 62 HOH HOH . D 4 HOH A 62 3380 63 HOH HOH . D 4 HOH A 63 3381 64 HOH HOH . D 4 HOH A 64 3382 65 HOH HOH . D 4 HOH A 65 3383 66 HOH HOH . D 4 HOH A 66 3384 67 HOH HOH . D 4 HOH A 67 3385 68 HOH HOH . D 4 HOH A 68 3386 69 HOH HOH . D 4 HOH A 69 3387 70 HOH HOH . D 4 HOH A 70 3388 71 HOH HOH . D 4 HOH A 71 3389 72 HOH HOH . D 4 HOH A 72 3390 73 HOH HOH . D 4 HOH A 73 3391 74 HOH HOH . D 4 HOH A 74 3392 75 HOH HOH . D 4 HOH A 75 3393 76 HOH HOH . D 4 HOH A 76 3394 77 HOH HOH . D 4 HOH A 77 3395 78 HOH HOH . D 4 HOH A 78 3396 79 HOH HOH . D 4 HOH A 79 3397 80 HOH HOH . D 4 HOH A 80 3398 81 HOH HOH . D 4 HOH A 81 3399 82 HOH HOH . D 4 HOH A 82 3400 83 HOH HOH . D 4 HOH A 83 3401 84 HOH HOH . D 4 HOH A 84 3402 85 HOH HOH . D 4 HOH A 85 3403 86 HOH HOH . D 4 HOH A 86 3404 87 HOH HOH . D 4 HOH A 87 3405 88 HOH HOH . D 4 HOH A 88 3406 89 HOH HOH . D 4 HOH A 89 3407 90 HOH HOH . D 4 HOH A 90 3408 91 HOH HOH . D 4 HOH A 91 3409 92 HOH HOH . D 4 HOH A 92 3410 93 HOH HOH . D 4 HOH A 93 3411 94 HOH HOH . D 4 HOH A 94 3412 95 HOH HOH . D 4 HOH A 95 3413 96 HOH HOH . D 4 HOH A 96 3414 98 HOH HOH . D 4 HOH A 97 3415 99 HOH HOH . D 4 HOH A 98 3416 100 HOH HOH . D 4 HOH A 99 3417 101 HOH HOH . D 4 HOH A 100 3418 102 HOH HOH . D 4 HOH A 101 3419 105 HOH HOH . D 4 HOH A 102 3420 106 HOH HOH . D 4 HOH A 103 3421 107 HOH HOH . D 4 HOH A 104 3422 108 HOH HOH . D 4 HOH A 105 3423 109 HOH HOH . D 4 HOH A 106 3424 110 HOH HOH . D 4 HOH A 107 3425 113 HOH HOH . D 4 HOH A 108 3426 114 HOH HOH . D 4 HOH A 109 3427 115 HOH HOH . D 4 HOH A 110 3428 116 HOH HOH . D 4 HOH A 111 3429 117 HOH HOH . D 4 HOH A 112 3430 118 HOH HOH . D 4 HOH A 113 3431 119 HOH HOH . D 4 HOH A 114 3432 120 HOH HOH . D 4 HOH A 115 3433 121 HOH HOH . D 4 HOH A 116 3434 122 HOH HOH . D 4 HOH A 117 3435 123 HOH HOH . D 4 HOH A 118 3436 124 HOH HOH . D 4 HOH A 119 3437 125 HOH HOH . D 4 HOH A 120 3438 126 HOH HOH . D 4 HOH A 121 3439 127 HOH HOH . D 4 HOH A 122 3440 128 HOH HOH . D 4 HOH A 123 3441 129 HOH HOH . D 4 HOH A 124 3442 130 HOH HOH . D 4 HOH A 125 3443 133 HOH HOH . D 4 HOH A 126 3444 135 HOH HOH . D 4 HOH A 127 3445 136 HOH HOH . D 4 HOH A 128 3446 137 HOH HOH . D 4 HOH A 129 3447 138 HOH HOH . D 4 HOH A 130 3448 139 HOH HOH . D 4 HOH A 131 3449 140 HOH HOH . D 4 HOH A 132 3450 141 HOH HOH . D 4 HOH A 133 3451 142 HOH HOH . D 4 HOH A 134 3452 143 HOH HOH . D 4 HOH A 135 3453 144 HOH HOH . D 4 HOH A 136 3454 145 HOH HOH . D 4 HOH A 137 3455 146 HOH HOH . D 4 HOH A 138 3456 148 HOH HOH . D 4 HOH A 139 3457 149 HOH HOH . D 4 HOH A 140 3458 150 HOH HOH . D 4 HOH A 141 3459 151 HOH HOH . D 4 HOH A 142 3460 152 HOH HOH . D 4 HOH A 143 3461 153 HOH HOH . D 4 HOH A 144 3462 154 HOH HOH . D 4 HOH A 145 3463 155 HOH HOH . D 4 HOH A 146 3464 156 HOH HOH . D 4 HOH A 147 3465 157 HOH HOH . D 4 HOH A 148 3466 158 HOH HOH . D 4 HOH A 149 3467 159 HOH HOH . D 4 HOH A 150 3468 160 HOH HOH . D 4 HOH A 151 3469 161 HOH HOH . D 4 HOH A 152 3470 162 HOH HOH . D 4 HOH A 153 3471 163 HOH HOH . D 4 HOH A 154 3472 164 HOH HOH . D 4 HOH A 155 3473 165 HOH HOH . D 4 HOH A 156 3474 166 HOH HOH . D 4 HOH A 157 3475 167 HOH HOH . D 4 HOH A 158 3476 168 HOH HOH . D 4 HOH A 159 3477 169 HOH HOH . D 4 HOH A 160 3478 170 HOH HOH . D 4 HOH A 161 3479 171 HOH HOH . D 4 HOH A 162 3480 172 HOH HOH . D 4 HOH A 163 3481 173 HOH HOH . D 4 HOH A 164 3482 175 HOH HOH . D 4 HOH A 165 3483 176 HOH HOH . D 4 HOH A 166 3484 177 HOH HOH . D 4 HOH A 167 3485 178 HOH HOH . D 4 HOH A 168 3486 179 HOH HOH . D 4 HOH A 169 3487 180 HOH HOH . D 4 HOH A 170 3488 182 HOH HOH . D 4 HOH A 171 3489 183 HOH HOH . D 4 HOH A 172 3490 184 HOH HOH . D 4 HOH A 173 3491 185 HOH HOH . D 4 HOH A 174 3492 186 HOH HOH . D 4 HOH A 175 3493 187 HOH HOH . D 4 HOH A 176 3494 188 HOH HOH . D 4 HOH A 177 3495 189 HOH HOH . D 4 HOH A 178 3496 190 HOH HOH . D 4 HOH A 179 3497 191 HOH HOH . D 4 HOH A 180 3498 192 HOH HOH . D 4 HOH A 181 3499 193 HOH HOH . D 4 HOH A 182 3500 194 HOH HOH . D 4 HOH A 183 3501 195 HOH HOH . D 4 HOH A 184 3502 196 HOH HOH . D 4 HOH A 185 3503 198 HOH HOH . D 4 HOH A 186 3504 199 HOH HOH . D 4 HOH A 187 3505 200 HOH HOH . D 4 HOH A 188 3506 201 HOH HOH . D 4 HOH A 189 3507 202 HOH HOH . D 4 HOH A 190 3508 203 HOH HOH . D 4 HOH A 191 3509 204 HOH HOH . D 4 HOH A 192 3510 205 HOH HOH . D 4 HOH A 193 3511 206 HOH HOH . D 4 HOH A 194 3512 207 HOH HOH . D 4 HOH A 195 3513 208 HOH HOH . D 4 HOH A 196 3514 209 HOH HOH . D 4 HOH A 197 3515 210 HOH HOH . D 4 HOH A 198 3516 211 HOH HOH . D 4 HOH A 199 3517 212 HOH HOH . D 4 HOH A 200 3518 213 HOH HOH . D 4 HOH A 201 3519 214 HOH HOH . D 4 HOH A 202 3520 215 HOH HOH . D 4 HOH A 203 3521 216 HOH HOH . D 4 HOH A 204 3522 218 HOH HOH . D 4 HOH A 205 3523 219 HOH HOH . D 4 HOH A 206 3524 220 HOH HOH . D 4 HOH A 207 3525 221 HOH HOH . D 4 HOH A 208 3526 222 HOH HOH . D 4 HOH A 209 3527 223 HOH HOH . D 4 HOH A 210 3528 224 HOH HOH . D 4 HOH A 211 3529 225 HOH HOH . D 4 HOH A 212 3530 226 HOH HOH . D 4 HOH A 213 3531 227 HOH HOH . D 4 HOH A 214 3532 228 HOH HOH . D 4 HOH A 215 3533 229 HOH HOH . D 4 HOH A 216 3534 230 HOH HOH . D 4 HOH A 217 3535 231 HOH HOH . D 4 HOH A 218 3536 232 HOH HOH . D 4 HOH A 219 3537 234 HOH HOH . D 4 HOH A 220 3538 235 HOH HOH . D 4 HOH A 221 3539 236 HOH HOH . D 4 HOH A 222 3540 241 HOH HOH . D 4 HOH A 223 3541 242 HOH HOH . D 4 HOH A 224 3542 243 HOH HOH . D 4 HOH A 225 3543 245 HOH HOH . D 4 HOH A 226 3544 246 HOH HOH . D 4 HOH A 227 3545 249 HOH HOH . D 4 HOH A 228 3546 250 HOH HOH . D 4 HOH A 229 3547 252 HOH HOH . D 4 HOH A 230 3548 253 HOH HOH . D 4 HOH A 231 3549 254 HOH HOH . D 4 HOH A 232 3550 255 HOH HOH . D 4 HOH A 233 3551 256 HOH HOH . D 4 HOH A 234 3552 257 HOH HOH . D 4 HOH A 235 3553 258 HOH HOH . D 4 HOH A 236 3554 259 HOH HOH . D 4 HOH A 237 3555 261 HOH HOH . D 4 HOH A 238 3556 262 HOH HOH . D 4 HOH A 239 3557 263 HOH HOH . D 4 HOH A 240 3558 264 HOH HOH . D 4 HOH A 241 3559 265 HOH HOH . D 4 HOH A 242 3560 267 HOH HOH . D 4 HOH A 243 3561 268 HOH HOH . D 4 HOH A 244 3562 269 HOH HOH . D 4 HOH A 245 3563 270 HOH HOH . D 4 HOH A 246 3564 271 HOH HOH . D 4 HOH A 247 3565 272 HOH HOH . D 4 HOH A 248 3566 273 HOH HOH . D 4 HOH A 249 3567 274 HOH HOH . D 4 HOH A 250 3568 275 HOH HOH . D 4 HOH A 251 3569 276 HOH HOH . D 4 HOH A 252 3570 277 HOH HOH . D 4 HOH A 253 3571 278 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 3 -7.719 6.033 -1.296 1 19.54 ? C1 EDO 3318 A 1 HETATM 2 O O1 EDO . . . C 3 -9.005 6.667 -1.415 1 20.92 ? O1 EDO 3318 A 1 HETATM 3 C C2 EDO . . . C 3 -7.431 5.226 -2.552 1 21.7 ? C2 EDO 3318 A 1 HETATM 4 O O2 EDO . . . C 3 -7.364 6.154 -3.648 1 22.17 ? O2 EDO 3318 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #