data_3EMN # _model_server_result.job_id ldq22hnrvJ5K2KjldJyfZg _model_server_result.datetime_utc '2025-01-15 21:37:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3emn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 3EMN # _exptl.entry_id 3EMN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 677.933 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.25 _cell.angle_gamma 90 _cell.entry_id 3EMN _cell.length_a 100.23 _cell.length_b 58.39 _cell.length_c 66.58 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EMN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C36 H72 N O8 P' _chem_comp.formula_weight 677.933 _chem_comp.id MC3 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MC3 sing 218 n n C1 O3P MC3 sing 219 n n C1 H11 MC3 sing 220 n n C1 H12 MC3 sing 221 n n C2 C3 MC3 sing 222 n n C2 O2 MC3 sing 223 n n C2 H2 MC3 sing 224 n n C3 O3 MC3 sing 225 n n C3 H31 MC3 sing 226 n n C3 H32 MC3 sing 227 n n C4 C5 MC3 sing 228 n n C4 O4P MC3 sing 229 n n C4 H41 MC3 sing 230 n n C4 H42 MC3 sing 231 n n C5 N MC3 sing 232 n n C5 H51 MC3 sing 233 n n C5 H52 MC3 sing 234 n n C6 N MC3 sing 235 n n C6 H61 MC3 sing 236 n n C6 H62 MC3 sing 237 n n C6 H63 MC3 sing 238 n n C7 N MC3 sing 239 n n C7 H71 MC3 sing 240 n n C7 H72 MC3 sing 241 n n C7 H73 MC3 sing 242 n n C8 N MC3 sing 243 n n C8 H81 MC3 sing 244 n n C8 H82 MC3 sing 245 n n C8 H83 MC3 sing 246 n n C11 C12 MC3 sing 247 n n C11 O3 MC3 sing 248 n n C11 O11 MC3 doub 249 n n C12 C13 MC3 sing 250 n n C12 H121 MC3 sing 251 n n C12 H122 MC3 sing 252 n n C13 C14 MC3 sing 253 n n C13 H131 MC3 sing 254 n n C13 H132 MC3 sing 255 n n C14 C15 MC3 sing 256 n n C14 H141 MC3 sing 257 n n C14 H142 MC3 sing 258 n n C15 C16 MC3 sing 259 n n C15 H151 MC3 sing 260 n n C15 H152 MC3 sing 261 n n C16 C17 MC3 sing 262 n n C16 H161 MC3 sing 263 n n C16 H162 MC3 sing 264 n n C17 C18 MC3 sing 265 n n C17 H171 MC3 sing 266 n n C17 H172 MC3 sing 267 n n C18 C19 MC3 sing 268 n n C18 H181 MC3 sing 269 n n C18 H182 MC3 sing 270 n n C19 C20 MC3 sing 271 n n C19 H191 MC3 sing 272 n n C19 H192 MC3 sing 273 n n C20 C21 MC3 sing 274 n n C20 H201 MC3 sing 275 n n C20 H202 MC3 sing 276 n n C21 C22 MC3 sing 277 n n C21 H211 MC3 sing 278 n n C21 H212 MC3 sing 279 n n C22 C23 MC3 sing 280 n n C22 H221 MC3 sing 281 n n C22 H222 MC3 sing 282 n n C23 C24 MC3 sing 283 n n C23 H231 MC3 sing 284 n n C23 H232 MC3 sing 285 n n C24 H241 MC3 sing 286 n n C24 H242 MC3 sing 287 n n C24 H243 MC3 sing 288 n n C31 C32 MC3 sing 289 n n C31 O2 MC3 sing 290 n n C31 O31 MC3 doub 291 n n C32 C33 MC3 sing 292 n n C32 H321 MC3 sing 293 n n C32 H322 MC3 sing 294 n n C33 C34 MC3 sing 295 n n C33 H331 MC3 sing 296 n n C33 H332 MC3 sing 297 n n C34 C35 MC3 sing 298 n n C34 H341 MC3 sing 299 n n C34 H342 MC3 sing 300 n n C35 C36 MC3 sing 301 n n C35 H351 MC3 sing 302 n n C35 H352 MC3 sing 303 n n C36 C37 MC3 sing 304 n n C36 H361 MC3 sing 305 n n C36 H362 MC3 sing 306 n n C37 C38 MC3 sing 307 n n C37 H371 MC3 sing 308 n n C37 H372 MC3 sing 309 n n C38 C39 MC3 sing 310 n n C38 H381 MC3 sing 311 n n C38 H382 MC3 sing 312 n n C39 C40 MC3 sing 313 n n C39 H391 MC3 sing 314 n n C39 H392 MC3 sing 315 n n C40 C41 MC3 sing 316 n n C40 H401 MC3 sing 317 n n C40 H402 MC3 sing 318 n n C41 C42 MC3 sing 319 n n C41 H411 MC3 sing 320 n n C41 H412 MC3 sing 321 n n C42 C43 MC3 sing 322 n n C42 H421 MC3 sing 323 n n C42 H422 MC3 sing 324 n n C43 C44 MC3 sing 325 n n C43 H431 MC3 sing 326 n n C43 H432 MC3 sing 327 n n C44 H441 MC3 sing 328 n n C44 H442 MC3 sing 329 n n C44 H443 MC3 sing 330 n n O1P P MC3 doub 331 n n O2P P MC3 sing 332 n n O3P P MC3 sing 333 n n O4P P MC3 sing 334 n n # _atom_sites.entry_id 3EMN _atom_sites.fract_transf_matrix[1][1] 0.009977 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001625 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017126 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015217 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MC3 X 1 500 500 MC3 MC3 . C 3 HOH X 1 501 1 HOH HOH . C 3 HOH X 2 502 2 HOH HOH . C 3 HOH X 3 503 3 HOH HOH . C 3 HOH X 4 504 4 HOH HOH . C 3 HOH X 5 505 5 HOH HOH . C 3 HOH X 6 506 6 HOH HOH . C 3 HOH X 7 507 7 HOH HOH . C 3 HOH X 8 508 8 HOH HOH . C 3 HOH X 9 509 9 HOH HOH . C 3 HOH X 10 510 10 HOH HOH . C 3 HOH X 11 511 11 HOH HOH . C 3 HOH X 12 512 12 HOH HOH . C 3 HOH X 13 513 13 HOH HOH . C 3 HOH X 14 514 14 HOH HOH . C 3 HOH X 15 515 15 HOH HOH . C 3 HOH X 16 516 16 HOH HOH . C 3 HOH X 17 517 17 HOH HOH . C 3 HOH X 18 518 18 HOH HOH . C 3 HOH X 19 519 19 HOH HOH . C 3 HOH X 20 520 20 HOH HOH . C 3 HOH X 21 521 21 HOH HOH . C 3 HOH X 22 522 22 HOH HOH . C 3 HOH X 23 523 23 HOH HOH . C 3 HOH X 24 524 24 HOH HOH . C 3 HOH X 25 525 25 HOH HOH . C 3 HOH X 26 526 26 HOH HOH . C 3 HOH X 27 527 27 HOH HOH . C 3 HOH X 28 528 28 HOH HOH . C 3 HOH X 29 529 29 HOH HOH . C 3 HOH X 30 530 30 HOH HOH . C 3 HOH X 31 531 31 HOH HOH . C 3 HOH X 32 532 32 HOH HOH . C 3 HOH X 33 533 33 HOH HOH . C 3 HOH X 34 534 34 HOH HOH . C 3 HOH X 35 535 35 HOH HOH . C 3 HOH X 36 536 36 HOH HOH . C 3 HOH X 37 537 37 HOH HOH . C 3 HOH X 38 538 38 HOH HOH . C 3 HOH X 39 539 39 HOH HOH . C 3 HOH X 40 540 40 HOH HOH . C 3 HOH X 41 541 41 HOH HOH . C 3 HOH X 42 542 42 HOH HOH . C 3 HOH X 43 543 43 HOH HOH . C 3 HOH X 44 544 44 HOH HOH . C 3 HOH X 45 545 45 HOH HOH . C 3 HOH X 46 546 46 HOH HOH . C 3 HOH X 47 547 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MC3 . . . B 2 35.259 37.716 31.548 1 68.31 ? C1 MC3 500 X 1 HETATM 2 C C2 MC3 . . . B 2 34.236 36.663 31.998 1 66.83 ? C2 MC3 500 X 1 HETATM 3 C C3 MC3 . . . B 2 34.933 35.418 32.559 1 65.77 ? C3 MC3 500 X 1 HETATM 4 C C31 MC3 . . . B 2 32.205 38.025 32.427 1 61.77 ? C31 MC3 500 X 1 HETATM 5 C C32 MC3 . . . B 2 30.78 38.001 32.986 1 59.93 ? C32 MC3 500 X 1 HETATM 6 C C33 MC3 . . . B 2 30.622 38.262 34.492 1 57.48 ? C33 MC3 500 X 1 HETATM 7 C C34 MC3 . . . B 2 29.166 38.152 35.004 1 53.7 ? C34 MC3 500 X 1 HETATM 8 C C35 MC3 . . . B 2 28.3 39.356 34.616 1 52.7 ? C35 MC3 500 X 1 HETATM 9 C C36 MC3 . . . B 2 26.886 39.468 35.212 1 49.37 ? C36 MC3 500 X 1 HETATM 10 C C37 MC3 . . . B 2 25.921 39.927 34.099 1 50.42 ? C37 MC3 500 X 1 HETATM 11 C C38 MC3 . . . B 2 24.515 40.364 34.538 1 49.78 ? C38 MC3 500 X 1 HETATM 12 C C39 MC3 . . . B 2 23.541 40.076 33.415 1 50.99 ? C39 MC3 500 X 1 HETATM 13 C C40 MC3 . . . B 2 22.544 40.831 33.071 1 50.73 ? C40 MC3 500 X 1 HETATM 14 C C41 MC3 . . . B 2 21.537 41.356 32.624 1 48.61 ? C41 MC3 500 X 1 HETATM 15 C C42 MC3 . . . B 2 20.444 41.822 32.146 1 48.9 ? C42 MC3 500 X 1 HETATM 16 C C43 MC3 . . . B 2 20.278 43.086 31.309 1 44.54 ? C43 MC3 500 X 1 HETATM 17 O O2 MC3 . . . B 2 33.281 37.175 32.955 1 64.52 ? O2 MC3 500 X 1 HETATM 18 O O31 MC3 . . . B 2 32.463 38.755 31.485 1 60.55 ? O31 MC3 500 X 1 HETATM 19 O O1P MC3 . . . B 2 37.399 40.055 31.565 1 70.8 ? O1P MC3 500 X 1 HETATM 20 O O2P MC3 . . . B 2 38.23 38.903 33.799 1 69.46 ? O2P MC3 500 X 1 HETATM 21 O O3P MC3 . . . B 2 36.036 38.186 32.659 1 70.25 ? O3P MC3 500 X 1 HETATM 22 P P MC3 . . . B 2 37.508 38.839 32.471 1 71.32 ? P MC3 500 X 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 22 #