data_3EMR # _model_server_result.job_id F0sE2ubcFotbnLGgxgR_-g _model_server_result.datetime_utc '2024-11-26 22:51:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3emr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":702}' # _entry.id 3EMR # _exptl.entry_id 3EMR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3EMR _cell.length_a 102.79 _cell.length_b 102.79 _cell.length_c 159.07 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EMR _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 9_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 53.023333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 1 1_555 A N GLU 2 A GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale2 A C ASP 62 A ASP 62 1_555 A N MSE 63 A MSE 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C MSE 63 A MSE 63 1_555 A N GLN 64 A GLN 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale4 A C GLY 157 A GLY 157 1_555 A N MSE 158 A MSE 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale5 A C MSE 158 A MSE 158 1_555 A N PRO 159 A PRO 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale6 A C ARG 160 A ARG 160 1_555 A N MSE 161 A MSE 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale7 A C MSE 161 A MSE 161 1_555 A N ARG 162 A ARG 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale8 A C LEU 180 A LEU 180 1_555 A N MSE 181 A MSE 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale9 A C MSE 181 A MSE 181 1_555 A N LEU 182 A LEU 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale10 A C THR 246 A THR 246 1_555 A N MSE 247 A MSE 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale11 A C MSE 247 A MSE 247 1_555 A N HIS 248 A HIS 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale12 A C PHE 263 A PHE 263 1_555 A N MSE 264 A MSE 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale13 A C MSE 264 A MSE 264 1_555 A N VAL 265 A VAL 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? metalc ? metalc1 A NE2 HIS 146 A HIS 146 1_555 B FE FE . A FE 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc2 A OD1 ASP 148 A ASP 148 1_555 B FE FE . A FE 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc3 A NE2 HIS 248 A HIS 248 1_555 B FE FE . A FE 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc4 B FE FE . A FE 400 1_555 I O HOH . A HOH 823 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc5 B FE FE . A FE 400 1_555 I O HOH . A HOH 824 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc6 B FE FE . A FE 400 1_555 I O HOH . A HOH 851 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3EMR _atom_sites.fract_transf_matrix[1][1] 0.009729 _atom_sites.fract_transf_matrix[1][2] 0.005617 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011234 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006287 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 400 400 FE FE . C 3 SO4 A 1 601 601 SO4 SO4 . D 3 SO4 A 1 602 602 SO4 SO4 . E 3 SO4 A 1 603 603 SO4 SO4 . F 3 SO4 A 1 604 604 SO4 SO4 . G 4 GOL A 1 701 701 GOL GOL . H 4 GOL A 1 702 702 GOL GOL . I 5 HOH A 1 703 1 HOH HOH . I 5 HOH A 2 704 2 HOH HOH . I 5 HOH A 3 705 3 HOH HOH . I 5 HOH A 4 706 4 HOH HOH . I 5 HOH A 5 707 5 HOH HOH . I 5 HOH A 6 708 6 HOH HOH . I 5 HOH A 7 709 7 HOH HOH . I 5 HOH A 8 710 8 HOH HOH . I 5 HOH A 9 711 9 HOH HOH . I 5 HOH A 10 712 10 HOH HOH . I 5 HOH A 11 713 11 HOH HOH . I 5 HOH A 12 714 12 HOH HOH . I 5 HOH A 13 715 13 HOH HOH . I 5 HOH A 14 716 14 HOH HOH . I 5 HOH A 15 717 15 HOH HOH . I 5 HOH A 16 718 16 HOH HOH . I 5 HOH A 17 719 17 HOH HOH . I 5 HOH A 18 720 18 HOH HOH . I 5 HOH A 19 721 19 HOH HOH . I 5 HOH A 20 722 20 HOH HOH . I 5 HOH A 21 723 21 HOH HOH . I 5 HOH A 22 724 22 HOH HOH . I 5 HOH A 23 725 23 HOH HOH . I 5 HOH A 24 726 24 HOH HOH . I 5 HOH A 25 727 25 HOH HOH . I 5 HOH A 26 728 26 HOH HOH . I 5 HOH A 27 729 27 HOH HOH . I 5 HOH A 28 730 28 HOH HOH . I 5 HOH A 29 731 29 HOH HOH . I 5 HOH A 30 732 30 HOH HOH . I 5 HOH A 31 733 31 HOH HOH . I 5 HOH A 32 734 32 HOH HOH . I 5 HOH A 33 735 33 HOH HOH . I 5 HOH A 34 736 34 HOH HOH . I 5 HOH A 35 737 35 HOH HOH . I 5 HOH A 36 738 36 HOH HOH . I 5 HOH A 37 739 37 HOH HOH . I 5 HOH A 38 740 38 HOH HOH . I 5 HOH A 39 741 39 HOH HOH . I 5 HOH A 40 742 40 HOH HOH . I 5 HOH A 41 743 41 HOH HOH . I 5 HOH A 42 744 42 HOH HOH . I 5 HOH A 43 745 43 HOH HOH . I 5 HOH A 44 746 44 HOH HOH . I 5 HOH A 45 747 45 HOH HOH . I 5 HOH A 46 748 46 HOH HOH . I 5 HOH A 47 749 47 HOH HOH . I 5 HOH A 48 750 48 HOH HOH . I 5 HOH A 49 751 49 HOH HOH . I 5 HOH A 50 752 50 HOH HOH . I 5 HOH A 51 753 51 HOH HOH . I 5 HOH A 52 754 52 HOH HOH . I 5 HOH A 53 755 53 HOH HOH . I 5 HOH A 54 756 54 HOH HOH . I 5 HOH A 55 757 55 HOH HOH . I 5 HOH A 56 758 56 HOH HOH . I 5 HOH A 57 759 57 HOH HOH . I 5 HOH A 58 760 58 HOH HOH . I 5 HOH A 59 761 59 HOH HOH . I 5 HOH A 60 762 60 HOH HOH . I 5 HOH A 61 763 61 HOH HOH . I 5 HOH A 62 764 62 HOH HOH . I 5 HOH A 63 765 63 HOH HOH . I 5 HOH A 64 766 64 HOH HOH . I 5 HOH A 65 767 65 HOH HOH . I 5 HOH A 66 768 66 HOH HOH . I 5 HOH A 67 769 67 HOH HOH . I 5 HOH A 68 770 68 HOH HOH . I 5 HOH A 69 771 69 HOH HOH . I 5 HOH A 70 772 70 HOH HOH . I 5 HOH A 71 773 71 HOH HOH . I 5 HOH A 72 774 72 HOH HOH . I 5 HOH A 73 775 73 HOH HOH . I 5 HOH A 74 776 74 HOH HOH . I 5 HOH A 75 777 75 HOH HOH . I 5 HOH A 76 778 76 HOH HOH . I 5 HOH A 77 779 77 HOH HOH . I 5 HOH A 78 780 78 HOH HOH . I 5 HOH A 79 781 79 HOH HOH . I 5 HOH A 80 782 80 HOH HOH . I 5 HOH A 81 783 81 HOH HOH . I 5 HOH A 82 784 82 HOH HOH . I 5 HOH A 83 785 83 HOH HOH . I 5 HOH A 84 786 84 HOH HOH . I 5 HOH A 85 787 85 HOH HOH . I 5 HOH A 86 788 86 HOH HOH . I 5 HOH A 87 789 87 HOH HOH . I 5 HOH A 88 790 88 HOH HOH . I 5 HOH A 89 791 89 HOH HOH . I 5 HOH A 90 792 90 HOH HOH . I 5 HOH A 91 793 91 HOH HOH . I 5 HOH A 92 794 92 HOH HOH . I 5 HOH A 93 795 93 HOH HOH . I 5 HOH A 94 796 94 HOH HOH . I 5 HOH A 95 797 95 HOH HOH . I 5 HOH A 96 798 96 HOH HOH . I 5 HOH A 97 799 97 HOH HOH . I 5 HOH A 98 800 98 HOH HOH . I 5 HOH A 99 801 99 HOH HOH . I 5 HOH A 100 802 100 HOH HOH . I 5 HOH A 101 803 101 HOH HOH . I 5 HOH A 102 804 102 HOH HOH . I 5 HOH A 103 805 103 HOH HOH . I 5 HOH A 104 806 104 HOH HOH . I 5 HOH A 105 807 105 HOH HOH . I 5 HOH A 106 808 106 HOH HOH . I 5 HOH A 107 809 107 HOH HOH . I 5 HOH A 108 810 108 HOH HOH . I 5 HOH A 109 811 109 HOH HOH . I 5 HOH A 110 812 110 HOH HOH . I 5 HOH A 111 813 111 HOH HOH . I 5 HOH A 112 814 112 HOH HOH . I 5 HOH A 113 815 113 HOH HOH . I 5 HOH A 114 816 114 HOH HOH . I 5 HOH A 115 817 115 HOH HOH . I 5 HOH A 116 818 116 HOH HOH . I 5 HOH A 117 819 117 HOH HOH . I 5 HOH A 118 820 118 HOH HOH . I 5 HOH A 119 821 119 HOH HOH . I 5 HOH A 120 822 120 HOH HOH . I 5 HOH A 121 823 121 HOH HOH . I 5 HOH A 122 824 122 HOH HOH . I 5 HOH A 123 825 123 HOH HOH . I 5 HOH A 124 826 124 HOH HOH . I 5 HOH A 125 827 125 HOH HOH . I 5 HOH A 126 828 126 HOH HOH . I 5 HOH A 127 829 127 HOH HOH . I 5 HOH A 128 830 128 HOH HOH . I 5 HOH A 129 831 129 HOH HOH . I 5 HOH A 130 832 130 HOH HOH . I 5 HOH A 131 833 131 HOH HOH . I 5 HOH A 132 834 132 HOH HOH . I 5 HOH A 133 835 133 HOH HOH . I 5 HOH A 134 836 134 HOH HOH . I 5 HOH A 135 837 135 HOH HOH . I 5 HOH A 136 838 136 HOH HOH . I 5 HOH A 137 839 137 HOH HOH . I 5 HOH A 138 840 138 HOH HOH . I 5 HOH A 139 841 139 HOH HOH . I 5 HOH A 140 842 140 HOH HOH . I 5 HOH A 141 843 141 HOH HOH . I 5 HOH A 142 844 142 HOH HOH . I 5 HOH A 143 845 143 HOH HOH . I 5 HOH A 144 846 144 HOH HOH . I 5 HOH A 145 847 145 HOH HOH . I 5 HOH A 146 848 146 HOH HOH . I 5 HOH A 147 849 147 HOH HOH . I 5 HOH A 148 850 148 HOH HOH . I 5 HOH A 149 851 149 HOH HOH . I 5 HOH A 150 852 150 HOH HOH . I 5 HOH A 151 853 151 HOH HOH . I 5 HOH A 152 854 152 HOH HOH . I 5 HOH A 153 855 153 HOH HOH . I 5 HOH A 154 856 154 HOH HOH . I 5 HOH A 155 857 155 HOH HOH . I 5 HOH A 156 858 156 HOH HOH . I 5 HOH A 157 859 157 HOH HOH . I 5 HOH A 158 860 158 HOH HOH . I 5 HOH A 159 861 159 HOH HOH . I 5 HOH A 160 862 160 HOH HOH . I 5 HOH A 161 863 161 HOH HOH . I 5 HOH A 162 864 162 HOH HOH . I 5 HOH A 163 865 163 HOH HOH . I 5 HOH A 164 866 164 HOH HOH . I 5 HOH A 165 867 165 HOH HOH . I 5 HOH A 166 868 166 HOH HOH . I 5 HOH A 167 869 167 HOH HOH . I 5 HOH A 168 870 168 HOH HOH . I 5 HOH A 169 871 169 HOH HOH . I 5 HOH A 170 872 170 HOH HOH . I 5 HOH A 171 873 171 HOH HOH . I 5 HOH A 172 874 172 HOH HOH . I 5 HOH A 173 875 173 HOH HOH . I 5 HOH A 174 876 174 HOH HOH . I 5 HOH A 175 877 175 HOH HOH . I 5 HOH A 176 878 176 HOH HOH . I 5 HOH A 177 879 177 HOH HOH . I 5 HOH A 178 880 178 HOH HOH . I 5 HOH A 179 881 179 HOH HOH . I 5 HOH A 180 882 180 HOH HOH . I 5 HOH A 181 883 181 HOH HOH . I 5 HOH A 182 884 182 HOH HOH . I 5 HOH A 183 885 183 HOH HOH . I 5 HOH A 184 886 184 HOH HOH . I 5 HOH A 185 887 185 HOH HOH . I 5 HOH A 186 888 186 HOH HOH . I 5 HOH A 187 889 187 HOH HOH . I 5 HOH A 188 890 188 HOH HOH . I 5 HOH A 189 891 189 HOH HOH . I 5 HOH A 190 892 190 HOH HOH . I 5 HOH A 191 893 191 HOH HOH . I 5 HOH A 192 894 192 HOH HOH . I 5 HOH A 193 895 193 HOH HOH . I 5 HOH A 194 896 194 HOH HOH . I 5 HOH A 195 897 195 HOH HOH . I 5 HOH A 196 898 196 HOH HOH . I 5 HOH A 197 899 197 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 4 -9.318 36.822 23.158 1 39.17 ? C1 GOL 702 A 1 HETATM 2 O O1 GOL . . . H 4 -9.732 35.826 22.209 1 33.7 ? O1 GOL 702 A 1 HETATM 3 C C2 GOL . . . H 4 -8.459 37.888 22.479 1 42.06 ? C2 GOL 702 A 1 HETATM 4 O O2 GOL . . . H 4 -7.136 37.417 22.156 1 37.53 ? O2 GOL 702 A 1 HETATM 5 C C3 GOL . . . H 4 -9.244 38.541 21.359 1 45.46 ? C3 GOL 702 A 1 HETATM 6 O O3 GOL . . . H 4 -8.737 38.258 20.037 1 60.78 ? O3 GOL 702 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #