data_3EN8 # _model_server_result.job_id ud-wH_1H-g_rQgC8VsOhBw _model_server_result.datetime_utc '2025-05-24 13:28:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3en8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":131}' # _entry.id 3EN8 # _exptl.entry_id 3EN8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3EN8 _cell.length_a 61.507 _cell.length_b 60.329 _cell.length_c 92.614 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EN8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 46.307 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 1 A GLY 0 1_555 A N MSE 2 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale2 A C MSE 2 A MSE 1 1_555 A N ARG 3 A ARG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C ARG 48 A ARG 47 1_555 A N MSE 49 A MSE 48 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.326 ? covale ? covale4 A C ARG 48 A ARG 47 1_555 A N MSE 49 A MSE 48 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C MSE 49 A MSE 48 1_555 A N ASN 50 A ASN 49 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale6 A C MSE 49 A MSE 48 1_555 A N ASN 50 A ASN 49 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 A C ILE 95 A ILE 94 1_555 A N MSE 96 A MSE 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 A C MSE 96 A MSE 95 1_555 A N GLU 97 A GLU 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? metalc ? metalc1 A OD2 ASP 32 A ASP 31 1_555 B CA CA . A CA 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc2 A OD1 ASP 33 A ASP 32 1_555 B CA CA . A CA 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.993 ? metalc ? metalc3 A OD2 ASP 33 A ASP 32 1_555 B CA CA . A CA 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc4 B CA CA . A CA 128 1_555 F O HOH . A HOH 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 259 n n O1 HO1 PG4 sing 260 n n C1 C2 PG4 sing 261 n n C1 H11 PG4 sing 262 n n C1 H12 PG4 sing 263 n n C2 O2 PG4 sing 264 n n C2 H21 PG4 sing 265 n n C2 H22 PG4 sing 266 n n O2 C3 PG4 sing 267 n n C3 C4 PG4 sing 268 n n C3 H31 PG4 sing 269 n n C3 H32 PG4 sing 270 n n C4 O3 PG4 sing 271 n n C4 H41 PG4 sing 272 n n C4 H42 PG4 sing 273 n n O3 C5 PG4 sing 274 n n C5 C6 PG4 sing 275 n n C5 H51 PG4 sing 276 n n C5 H52 PG4 sing 277 n n C6 O4 PG4 sing 278 n n C6 H61 PG4 sing 279 n n C6 H62 PG4 sing 280 n n O4 C7 PG4 sing 281 n n C7 C8 PG4 sing 282 n n C7 H71 PG4 sing 283 n n C7 H72 PG4 sing 284 n n C8 O5 PG4 sing 285 n n C8 H81 PG4 sing 286 n n C8 H82 PG4 sing 287 n n O5 HO5 PG4 sing 288 n n # _atom_sites.entry_id 3EN8 _atom_sites.fract_transf_matrix[1][1] 0.016258 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016576 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010797 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 128 1 CA CA . C 3 ACT A 1 129 2 ACT ACT . D 4 PEG A 1 130 3 PEG PEG . E 5 PG4 A 1 131 4 PG4 PG4 . F 6 HOH A 1 132 5 HOH HOH . F 6 HOH A 2 133 6 HOH HOH . F 6 HOH A 3 134 7 HOH HOH . F 6 HOH A 4 135 8 HOH HOH . F 6 HOH A 5 136 9 HOH HOH . F 6 HOH A 6 137 10 HOH HOH . F 6 HOH A 7 138 11 HOH HOH . F 6 HOH A 8 139 12 HOH HOH . F 6 HOH A 9 140 13 HOH HOH . F 6 HOH A 10 141 14 HOH HOH . F 6 HOH A 11 142 15 HOH HOH . F 6 HOH A 12 143 16 HOH HOH . F 6 HOH A 13 144 17 HOH HOH . F 6 HOH A 14 145 18 HOH HOH . F 6 HOH A 15 146 19 HOH HOH . F 6 HOH A 16 147 20 HOH HOH . F 6 HOH A 17 148 21 HOH HOH . F 6 HOH A 18 149 22 HOH HOH . F 6 HOH A 19 150 23 HOH HOH . F 6 HOH A 20 151 24 HOH HOH . F 6 HOH A 21 152 25 HOH HOH . F 6 HOH A 22 153 26 HOH HOH . F 6 HOH A 23 154 27 HOH HOH . F 6 HOH A 24 155 28 HOH HOH . F 6 HOH A 25 156 29 HOH HOH . F 6 HOH A 26 157 30 HOH HOH . F 6 HOH A 27 158 31 HOH HOH . F 6 HOH A 28 159 32 HOH HOH . F 6 HOH A 29 160 33 HOH HOH . F 6 HOH A 30 161 34 HOH HOH . F 6 HOH A 31 162 35 HOH HOH . F 6 HOH A 32 163 36 HOH HOH . F 6 HOH A 33 164 37 HOH HOH . F 6 HOH A 34 165 38 HOH HOH . F 6 HOH A 35 166 39 HOH HOH . F 6 HOH A 36 167 40 HOH HOH . F 6 HOH A 37 168 41 HOH HOH . F 6 HOH A 38 169 42 HOH HOH . F 6 HOH A 39 170 43 HOH HOH . F 6 HOH A 40 171 44 HOH HOH . F 6 HOH A 41 172 55 HOH HOH . F 6 HOH A 42 173 56 HOH HOH . F 6 HOH A 43 174 57 HOH HOH . F 6 HOH A 44 175 58 HOH HOH . F 6 HOH A 45 176 59 HOH HOH . F 6 HOH A 46 177 60 HOH HOH . F 6 HOH A 47 178 61 HOH HOH . F 6 HOH A 48 179 62 HOH HOH . F 6 HOH A 49 180 63 HOH HOH . F 6 HOH A 50 181 64 HOH HOH . F 6 HOH A 51 182 65 HOH HOH . F 6 HOH A 52 183 66 HOH HOH . F 6 HOH A 53 184 67 HOH HOH . F 6 HOH A 54 185 68 HOH HOH . F 6 HOH A 55 186 69 HOH HOH . F 6 HOH A 56 187 70 HOH HOH . F 6 HOH A 57 188 71 HOH HOH . F 6 HOH A 58 189 72 HOH HOH . F 6 HOH A 59 190 73 HOH HOH . F 6 HOH A 60 191 74 HOH HOH . F 6 HOH A 61 192 75 HOH HOH . F 6 HOH A 62 193 76 HOH HOH . F 6 HOH A 63 194 77 HOH HOH . F 6 HOH A 64 195 78 HOH HOH . F 6 HOH A 65 196 79 HOH HOH . F 6 HOH A 66 197 80 HOH HOH . F 6 HOH A 67 198 81 HOH HOH . F 6 HOH A 68 199 82 HOH HOH . F 6 HOH A 69 200 83 HOH HOH . F 6 HOH A 70 201 84 HOH HOH . F 6 HOH A 71 202 85 HOH HOH . F 6 HOH A 72 203 86 HOH HOH . F 6 HOH A 73 204 87 HOH HOH . F 6 HOH A 74 205 88 HOH HOH . F 6 HOH A 75 206 89 HOH HOH . F 6 HOH A 76 207 90 HOH HOH . F 6 HOH A 77 208 91 HOH HOH . F 6 HOH A 78 209 92 HOH HOH . F 6 HOH A 79 210 93 HOH HOH . F 6 HOH A 80 211 94 HOH HOH . F 6 HOH A 81 212 95 HOH HOH . F 6 HOH A 82 213 96 HOH HOH . F 6 HOH A 83 214 97 HOH HOH . F 6 HOH A 84 215 98 HOH HOH . F 6 HOH A 85 216 99 HOH HOH . F 6 HOH A 86 217 100 HOH HOH . F 6 HOH A 87 218 101 HOH HOH . F 6 HOH A 88 219 102 HOH HOH . F 6 HOH A 89 220 103 HOH HOH . F 6 HOH A 90 221 104 HOH HOH . F 6 HOH A 91 222 105 HOH HOH . F 6 HOH A 92 223 106 HOH HOH . F 6 HOH A 93 224 107 HOH HOH . F 6 HOH A 94 225 108 HOH HOH . F 6 HOH A 95 226 109 HOH HOH . F 6 HOH A 96 227 110 HOH HOH . F 6 HOH A 97 228 111 HOH HOH . F 6 HOH A 98 229 112 HOH HOH . F 6 HOH A 99 230 113 HOH HOH . F 6 HOH A 100 231 114 HOH HOH . F 6 HOH A 101 232 115 HOH HOH . F 6 HOH A 102 233 116 HOH HOH . F 6 HOH A 103 234 117 HOH HOH . F 6 HOH A 104 235 118 HOH HOH . F 6 HOH A 105 236 119 HOH HOH . F 6 HOH A 106 237 120 HOH HOH . F 6 HOH A 107 238 121 HOH HOH . F 6 HOH A 108 239 122 HOH HOH . F 6 HOH A 109 240 123 HOH HOH . F 6 HOH A 110 241 124 HOH HOH . F 6 HOH A 111 242 125 HOH HOH . F 6 HOH A 112 243 126 HOH HOH . F 6 HOH A 113 244 127 HOH HOH . F 6 HOH A 114 245 128 HOH HOH . F 6 HOH A 115 246 129 HOH HOH . F 6 HOH A 116 247 130 HOH HOH . F 6 HOH A 117 248 131 HOH HOH . F 6 HOH A 118 249 132 HOH HOH . F 6 HOH A 119 250 133 HOH HOH . F 6 HOH A 120 251 134 HOH HOH . F 6 HOH A 121 252 135 HOH HOH . F 6 HOH A 122 253 136 HOH HOH . F 6 HOH A 123 254 137 HOH HOH . F 6 HOH A 124 255 138 HOH HOH . F 6 HOH A 125 256 139 HOH HOH . F 6 HOH A 126 257 140 HOH HOH . F 6 HOH A 127 258 141 HOH HOH . F 6 HOH A 128 259 142 HOH HOH . F 6 HOH A 129 260 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . A . E 5 6.132 24.215 20.43 0.6 50.67 ? O1 PG4 131 A 1 HETATM 2 O O1 PG4 . B . E 5 6.315 24.09 20.097 0.4 40.08 ? O1 PG4 131 A 1 HETATM 3 C C1 PG4 . A . E 5 4.73 24.096 20.699 0.6 51.81 ? C1 PG4 131 A 1 HETATM 4 C C1 PG4 . B . E 5 4.964 24.163 20.571 0.4 41.8 ? C1 PG4 131 A 1 HETATM 5 C C2 PG4 . A . E 5 4.035 23.335 19.578 0.6 51.26 ? C2 PG4 131 A 1 HETATM 6 C C2 PG4 . B . E 5 4.007 23.508 19.579 0.4 41.24 ? C2 PG4 131 A 1 HETATM 7 O O2 PG4 . A . E 5 2.7 23.818 19.409 0.6 51.71 ? O2 PG4 131 A 1 HETATM 8 O O2 PG4 . B . E 5 2.725 24.136 19.644 0.4 41.83 ? O2 PG4 131 A 1 HETATM 9 C C3 PG4 . A . E 5 2.407 24.109 18.038 0.6 50.45 ? C3 PG4 131 A 1 HETATM 10 C C3 PG4 . B . E 5 2.307 24.655 18.377 0.4 41.93 ? C3 PG4 131 A 1 HETATM 11 C C4 PG4 . A . E 5 3.252 23.217 17.133 0.6 49.74 ? C4 PG4 131 A 1 HETATM 12 C C4 PG4 . B . E 5 3.216 24.133 17.268 0.4 41.37 ? C4 PG4 131 A 1 HETATM 13 O O3 PG4 . A . E 5 2.947 23.46 15.755 0.6 48.17 ? O3 PG4 131 A 1 HETATM 14 O O3 PG4 . B . E 5 3.044 24.893 16.069 0.4 41.71 ? O3 PG4 131 A 1 HETATM 15 C C5 PG4 . A . E 5 4.007 23.987 14.953 0.6 46.61 ? C5 PG4 131 A 1 HETATM 16 C C5 PG4 . B . E 5 3.875 24.381 15.025 0.4 40.09 ? C5 PG4 131 A 1 HETATM 17 C C6 PG4 . A . E 5 3.959 23.347 13.573 0.6 44.3 ? C6 PG4 131 A 1 HETATM 18 C C6 PG4 . B . E 5 3.182 24.517 13.675 0.4 38.09 ? C6 PG4 131 A 1 HETATM 19 O O4 PG4 . A . E 5 4.647 22.102 13.636 0.6 41.74 ? O4 PG4 131 A 1 HETATM 20 O O4 PG4 . B . E 5 4.07 25.078 12.713 0.4 35.73 ? O4 PG4 131 A 1 HETATM 21 C C7 PG4 . A . E 5 4.22 21.239 12.591 0.6 38.67 ? C7 PG4 131 A 1 HETATM 22 C C7 PG4 . B . E 5 3.374 25.981 11.856 0.4 32.66 ? C7 PG4 131 A 1 HETATM 23 C C8 PG4 . A . E 5 4.698 19.816 12.833 0.6 37.97 ? C8 PG4 131 A 1 HETATM 24 C C8 PG4 . B . E 5 1.876 25.807 12.087 0.4 31.68 ? C8 PG4 131 A 1 HETATM 25 O O5 PG4 . A . E 5 6.072 19.709 12.463 0.6 39.48 ? O5 PG4 131 A 1 HETATM 26 O O5 PG4 . B . E 5 1.135 26.92 11.569 0.4 27.71 ? O5 PG4 131 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 488 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 26 #