data_3ENV
#
_model_server_result.job_id            EcEBT3GzhZv7cHdp3eK5oA 
_model_server_result.datetime_utc      '2024-10-18 00:28:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3env 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1269}' 
#
_entry.id    3ENV 
#
_exptl.entry_id    3ENV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              230.11 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            5-O-phosphono-beta-D-arabinofuranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3ENV 
_cell.length_a            77.022 
_cell.length_b            77.022 
_cell.length_c            190.294 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ENV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C5 H11 O8 P' 
_chem_comp.formula_weight    230.11 
_chem_comp.id                ABF 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              5-O-phosphono-beta-D-arabinofuranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     "BETA-D-ARABINOFURANOSE-5'-PHOSPHATE;5-O-phosphono-beta-D-arabinose;5-O-phosphono-D-arabinose;5-O-phosphono-arabinose" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O4 ABF sing 1 n n 
C1 C2 ABF sing 2 n n 
C1 O1 ABF sing 3 n n 
C1 H1 ABF sing 4 n n 
O4 C4 ABF sing 5 n n 
C2 O2 ABF sing 6 n n 
C2 C3 ABF sing 7 n n 
C2 H2 ABF sing 8 n n 
O2 HO2 ABF sing 9 n n 
C3 O3 ABF sing 10 n n 
C3 C4 ABF sing 11 n n 
C3 H3 ABF sing 12 n n 
O3 HO3 ABF sing 13 n n 
C4 C5 ABF sing 14 n n 
C4 H4 ABF sing 15 n n 
C5 O5 ABF sing 16 n n 
C5 H51 ABF sing 17 n n 
C5 H52 ABF sing 18 n n 
O5 P' ABF sing 19 n n 
P' O1X ABF doub 20 n n 
P' O2X ABF sing 21 n n 
P' O3X ABF sing 22 n n 
O2X HO' ABF sing 23 n n 
O3X HOA ABF sing 24 n n 
O1 HO1 ABF sing 25 n n 
#
_pdbx_chem_comp_identifier.comp_id            ABF 
_pdbx_chem_comp_identifier.identifier         b-D-Araf5PO3 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     3ENV 
_atom_sites.fract_transf_matrix[1][1]    0.012983 
_atom_sites.fract_transf_matrix[1][2]    0.007496 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014992 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005255 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ABF A 1 1269 1269 ABF ABF . 
D 2 ABF B 1 1269 1269 ABF ABF . 
E 3 HOH A 1 1270 2 HOH HOH . 
E 3 HOH A 2 1271 3 HOH HOH . 
E 3 HOH A 3 1272 4 HOH HOH . 
E 3 HOH A 4 1273 5 HOH HOH . 
E 3 HOH A 5 1274 9 HOH HOH . 
E 3 HOH A 6 1275 11 HOH HOH . 
E 3 HOH A 7 1276 16 HOH HOH . 
E 3 HOH A 8 1277 20 HOH HOH . 
E 3 HOH A 9 1278 27 HOH HOH . 
E 3 HOH A 10 1279 29 HOH HOH . 
E 3 HOH A 11 1280 33 HOH HOH . 
E 3 HOH A 12 1281 35 HOH HOH . 
E 3 HOH A 13 1282 36 HOH HOH . 
E 3 HOH A 14 1283 37 HOH HOH . 
E 3 HOH A 15 1284 39 HOH HOH . 
E 3 HOH A 16 1285 41 HOH HOH . 
E 3 HOH A 17 1286 46 HOH HOH . 
E 3 HOH A 18 1287 49 HOH HOH . 
E 3 HOH A 19 1288 53 HOH HOH . 
E 3 HOH A 20 1289 54 HOH HOH . 
E 3 HOH A 21 1290 55 HOH HOH . 
E 3 HOH A 22 1291 57 HOH HOH . 
E 3 HOH A 23 1292 65 HOH HOH . 
E 3 HOH A 24 1293 67 HOH HOH . 
E 3 HOH A 25 1294 68 HOH HOH . 
E 3 HOH A 26 1295 69 HOH HOH . 
E 3 HOH A 27 1296 75 HOH HOH . 
E 3 HOH A 28 1297 79 HOH HOH . 
E 3 HOH A 29 1298 80 HOH HOH . 
E 3 HOH A 30 1299 85 HOH HOH . 
E 3 HOH A 31 1300 86 HOH HOH . 
E 3 HOH A 32 1301 89 HOH HOH . 
E 3 HOH A 33 1302 90 HOH HOH . 
E 3 HOH A 34 1303 92 HOH HOH . 
E 3 HOH A 35 1304 98 HOH HOH . 
E 3 HOH A 36 1305 99 HOH HOH . 
E 3 HOH A 37 1306 100 HOH HOH . 
E 3 HOH A 38 1307 104 HOH HOH . 
E 3 HOH A 39 1308 105 HOH HOH . 
E 3 HOH A 40 1309 106 HOH HOH . 
E 3 HOH A 41 1310 114 HOH HOH . 
E 3 HOH A 42 1311 116 HOH HOH . 
E 3 HOH A 43 1312 117 HOH HOH . 
E 3 HOH A 44 1313 120 HOH HOH . 
E 3 HOH A 45 1314 121 HOH HOH . 
E 3 HOH A 46 1315 123 HOH HOH . 
E 3 HOH A 47 1316 124 HOH HOH . 
E 3 HOH A 48 1317 126 HOH HOH . 
E 3 HOH A 49 1318 127 HOH HOH . 
E 3 HOH A 50 1319 129 HOH HOH . 
E 3 HOH A 51 1320 132 HOH HOH . 
E 3 HOH A 52 1321 139 HOH HOH . 
E 3 HOH A 53 1322 142 HOH HOH . 
E 3 HOH A 54 1323 147 HOH HOH . 
E 3 HOH A 55 1324 148 HOH HOH . 
E 3 HOH A 56 1325 150 HOH HOH . 
E 3 HOH A 57 1326 153 HOH HOH . 
F 3 HOH B 1 1270 1 HOH HOH . 
F 3 HOH B 2 1271 6 HOH HOH . 
F 3 HOH B 3 1272 7 HOH HOH . 
F 3 HOH B 4 1273 8 HOH HOH . 
F 3 HOH B 5 1274 12 HOH HOH . 
F 3 HOH B 6 1275 13 HOH HOH . 
F 3 HOH B 7 1276 14 HOH HOH . 
F 3 HOH B 8 1277 15 HOH HOH . 
F 3 HOH B 9 1278 17 HOH HOH . 
F 3 HOH B 10 1279 18 HOH HOH . 
F 3 HOH B 11 1280 21 HOH HOH . 
F 3 HOH B 12 1281 22 HOH HOH . 
F 3 HOH B 13 1282 23 HOH HOH . 
F 3 HOH B 14 1283 24 HOH HOH . 
F 3 HOH B 15 1284 25 HOH HOH . 
F 3 HOH B 16 1285 26 HOH HOH . 
F 3 HOH B 17 1286 28 HOH HOH . 
F 3 HOH B 18 1287 30 HOH HOH . 
F 3 HOH B 19 1288 31 HOH HOH . 
F 3 HOH B 20 1289 32 HOH HOH . 
F 3 HOH B 21 1290 34 HOH HOH . 
F 3 HOH B 22 1291 38 HOH HOH . 
F 3 HOH B 23 1292 40 HOH HOH . 
F 3 HOH B 24 1293 42 HOH HOH . 
F 3 HOH B 25 1294 43 HOH HOH . 
F 3 HOH B 26 1295 44 HOH HOH . 
F 3 HOH B 27 1296 45 HOH HOH . 
F 3 HOH B 28 1297 47 HOH HOH . 
F 3 HOH B 29 1298 48 HOH HOH . 
F 3 HOH B 30 1299 51 HOH HOH . 
F 3 HOH B 31 1300 52 HOH HOH . 
F 3 HOH B 32 1301 56 HOH HOH . 
F 3 HOH B 33 1302 58 HOH HOH . 
F 3 HOH B 34 1303 61 HOH HOH . 
F 3 HOH B 35 1304 62 HOH HOH . 
F 3 HOH B 36 1305 63 HOH HOH . 
F 3 HOH B 37 1306 64 HOH HOH . 
F 3 HOH B 38 1307 66 HOH HOH . 
F 3 HOH B 39 1308 70 HOH HOH . 
F 3 HOH B 40 1309 71 HOH HOH . 
F 3 HOH B 41 1310 73 HOH HOH . 
F 3 HOH B 42 1311 74 HOH HOH . 
F 3 HOH B 43 1312 76 HOH HOH . 
F 3 HOH B 44 1313 81 HOH HOH . 
F 3 HOH B 45 1314 82 HOH HOH . 
F 3 HOH B 46 1315 83 HOH HOH . 
F 3 HOH B 47 1316 84 HOH HOH . 
F 3 HOH B 48 1317 87 HOH HOH . 
F 3 HOH B 49 1318 88 HOH HOH . 
F 3 HOH B 50 1319 91 HOH HOH . 
F 3 HOH B 51 1320 94 HOH HOH . 
F 3 HOH B 52 1321 95 HOH HOH . 
F 3 HOH B 53 1322 97 HOH HOH . 
F 3 HOH B 54 1323 102 HOH HOH . 
F 3 HOH B 55 1324 108 HOH HOH . 
F 3 HOH B 56 1325 109 HOH HOH . 
F 3 HOH B 57 1326 110 HOH HOH . 
F 3 HOH B 58 1327 112 HOH HOH . 
F 3 HOH B 59 1328 119 HOH HOH . 
F 3 HOH B 60 1329 128 HOH HOH . 
F 3 HOH B 61 1330 133 HOH HOH . 
F 3 HOH B 62 1331 134 HOH HOH . 
F 3 HOH B 63 1332 136 HOH HOH . 
F 3 HOH B 64 1333 137 HOH HOH . 
F 3 HOH B 65 1334 140 HOH HOH . 
F 3 HOH B 66 1335 141 HOH HOH . 
F 3 HOH B 67 1336 144 HOH HOH . 
F 3 HOH B 68 1337 145 HOH HOH . 
F 3 HOH B 69 1338 146 HOH HOH . 
F 3 HOH B 70 1339 151 HOH HOH . 
F 3 HOH B 71 1340 154 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 ABF . . . C 2 -18.858 -41.585 10.478 1 36.14 ? C1 ABF 1269 A 1 
HETATM 2 O O4 ABF . . . C 2 -18.835 -42.54 9.512 1 34.97 ? O4 ABF 1269 A 1 
HETATM 3 C C2 ABF . . . C 2 -19.577 -42.044 11.577 1 36.53 ? C2 ABF 1269 A 1 
HETATM 4 O O2 ABF . . . C 2 -19.793 -41.348 12.735 1 34.4 ? O2 ABF 1269 A 1 
HETATM 5 C C3 ABF . . . C 2 -20.022 -43.326 11.255 1 36.94 ? C3 ABF 1269 A 1 
HETATM 6 O O3 ABF . . . C 2 -20.779 -44.145 12.065 1 37.7 ? O3 ABF 1269 A 1 
HETATM 7 C C4 ABF . . . C 2 -19.551 -43.615 9.967 1 35.47 ? C4 ABF 1269 A 1 
HETATM 8 C C5 ABF . . . C 2 -19.702 -44.868 9.089 1 36.61 ? C5 ABF 1269 A 1 
HETATM 9 O O5 ABF . . . C 2 -19.559 -44.52 7.671 1 37.47 ? O5 ABF 1269 A 1 
HETATM 10 P P' ABF . . . C 2 -18.202 -44.731 6.73 1 38.39 ? P' ABF 1269 A 1 
HETATM 11 O O1X ABF . . . C 2 -17.236 -43.592 6.742 1 32.73 ? O1X ABF 1269 A 1 
HETATM 12 O O2X ABF . . . C 2 -17.46 -46.099 7.227 1 36.73 ? O2X ABF 1269 A 1 
HETATM 13 O O3X ABF . . . C 2 -18.822 -45.076 5.231 1 31.83 ? O3X ABF 1269 A 1 
HETATM 14 O O1 ABF . . . C 2 -18.249 -40.367 10.373 1 37.81 ? O1 ABF 1269 A 1 
#
_model_server_stats.io_time_ms              41 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           14 
#