data_3EOR # _model_server_result.job_id u6Nq0hldrVkV8juut3gVCw _model_server_result.datetime_utc '2024-11-24 21:42:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3eor # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":901}' # _entry.id 3EOR # _exptl.entry_id 3EOR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 279.187 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2R)-1-(4-amino-2-oxo-pyrimidin-1-yl)-3-hydroxy-propan-2-yl]oxymethylphosphonic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3EOR _cell.length_a 145.681 _cell.length_b 145.681 _cell.length_c 145.681 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EOR _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_566 z+1/2,-x+3/2,-y+1 0 0 1 -1 0 0 0 -1 0 72.8405 218.5215 145.681 3 'crystal symmetry operation' 12_664 -y+3/2,-z+1,x-1/2 0 -1 0 0 0 -1 1 0 0 218.5215 145.681 -72.8405 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 14 A ASP 8 1_555 B ZN ZN . A ZN 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc2 A OD1 ASP 14 A ASP 8 1_555 C NA NA . A NA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? metalc ? metalc3 A ND1 HIS 48 A HIS 42 1_555 B ZN ZN . A ZN 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? # _chem_comp.formula 'C8 H14 N3 O6 P' _chem_comp.formula_weight 279.187 _chem_comp.id CFV _chem_comp.mon_nstd_flag . _chem_comp.name '[(2R)-1-(4-amino-2-oxo-pyrimidin-1-yl)-3-hydroxy-propan-2-yl]oxymethylphosphonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAN PAM CFV sing 70 n n PAM OAO CFV doub 71 n n PAM OAP CFV sing 72 n n PAM CAL CFV sing 73 n n CAL OAK CFV sing 74 n n OAK CAJ CFV sing 75 n n CAJ CAQ CFV sing 76 n n CAJ CAA CFV sing 77 n n CAQ OAR CFV sing 78 n n CAA NAB CFV sing 79 n n NAB CAC CFV sing 80 n n NAB CAH CFV sing 81 n n CAC CAD CFV doub 82 n n CAD CAE CFV sing 83 n n CAE NAF CFV sing 84 n n CAE NAG CFV doub 85 n n NAG CAH CFV sing 86 n n CAH OAI CFV doub 87 n n OAN HOAN CFV sing 88 n n OAP HOAP CFV sing 89 n n CAL HAL CFV sing 90 n n CAL HALA CFV sing 91 n n CAJ HAJ CFV sing 92 n n CAQ HAQ CFV sing 93 n n CAQ HAQA CFV sing 94 n n OAR HOAR CFV sing 95 n n CAA HAA CFV sing 96 n n CAA HAAA CFV sing 97 n n CAC HAC CFV sing 98 n n CAD HAD CFV sing 99 n n NAF HNAF CFV sing 100 n n NAF HNAA CFV sing 101 n n # _atom_sites.entry_id 3EOR _atom_sites.fract_transf_matrix[1][1] 0.006864 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006864 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006864 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 800 800 ZN ZN . C 3 NA A 1 801 801 NA NA . D 3 NA A 1 802 802 NA NA . E 4 CFV A 1 901 901 CFV CFV . F 5 GPP A 1 902 902 GPP GPP . G 6 HOH A 1 903 1 HOH HOH . G 6 HOH A 2 904 2 HOH HOH . G 6 HOH A 3 905 3 HOH HOH . G 6 HOH A 4 906 4 HOH HOH . G 6 HOH A 5 907 5 HOH HOH . G 6 HOH A 6 908 6 HOH HOH . G 6 HOH A 7 909 7 HOH HOH . G 6 HOH A 8 910 8 HOH HOH . G 6 HOH A 9 911 9 HOH HOH . G 6 HOH A 10 912 10 HOH HOH . G 6 HOH A 11 913 11 HOH HOH . G 6 HOH A 12 914 12 HOH HOH . G 6 HOH A 13 915 13 HOH HOH . G 6 HOH A 14 916 14 HOH HOH . G 6 HOH A 15 917 15 HOH HOH . G 6 HOH A 16 918 16 HOH HOH . G 6 HOH A 17 919 17 HOH HOH . G 6 HOH A 18 920 18 HOH HOH . G 6 HOH A 19 921 19 HOH HOH . G 6 HOH A 20 922 20 HOH HOH . G 6 HOH A 21 923 21 HOH HOH . G 6 HOH A 22 924 22 HOH HOH . G 6 HOH A 23 925 23 HOH HOH . G 6 HOH A 24 926 24 HOH HOH . G 6 HOH A 25 927 25 HOH HOH . G 6 HOH A 26 928 26 HOH HOH . G 6 HOH A 27 929 27 HOH HOH . G 6 HOH A 28 930 28 HOH HOH . G 6 HOH A 29 931 29 HOH HOH . G 6 HOH A 30 932 30 HOH HOH . G 6 HOH A 31 933 31 HOH HOH . G 6 HOH A 32 934 32 HOH HOH . G 6 HOH A 33 935 33 HOH HOH . G 6 HOH A 34 936 34 HOH HOH . G 6 HOH A 35 937 35 HOH HOH . G 6 HOH A 36 938 36 HOH HOH . G 6 HOH A 37 939 37 HOH HOH . G 6 HOH A 38 940 38 HOH HOH . G 6 HOH A 39 941 39 HOH HOH . G 6 HOH A 40 942 40 HOH HOH . G 6 HOH A 41 943 41 HOH HOH . G 6 HOH A 42 944 42 HOH HOH . G 6 HOH A 43 945 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAN CFV . . . E 4 139.477 101.083 43.527 1 108.02 ? OAN CFV 901 A 1 HETATM 2 P PAM CFV . . . E 4 140.095 99.896 44.115 1 110.07 ? PAM CFV 901 A 1 HETATM 3 O OAO CFV . . . E 4 140.903 99.087 43.212 1 107.24 ? OAO CFV 901 A 1 HETATM 4 O OAP CFV . . . E 4 139.245 99.118 45.007 1 109.77 ? OAP CFV 901 A 1 HETATM 5 C CAL CFV . . . E 4 141.326 100.64 45.183 1 102.78 ? CAL CFV 901 A 1 HETATM 6 O OAK CFV . . . E 4 140.844 101.026 46.458 1 90.37 ? OAK CFV 901 A 1 HETATM 7 C CAJ CFV . . . E 4 141.117 99.941 47.267 1 75.5 ? CAJ CFV 901 A 1 HETATM 8 C CAQ CFV . . . E 4 142.543 99.862 47.069 1 78.77 ? CAQ CFV 901 A 1 HETATM 9 O OAR CFV . . . E 4 142.999 99.009 48.076 1 85.18 ? OAR CFV 901 A 1 HETATM 10 C CAA CFV . . . E 4 141.105 100.132 48.741 1 64.35 ? CAA CFV 901 A 1 HETATM 11 N NAB CFV . . . E 4 139.951 100.912 49.09 1 56.68 ? NAB CFV 901 A 1 HETATM 12 C CAC CFV . . . E 4 138.711 100.539 48.712 1 51.58 ? CAC CFV 901 A 1 HETATM 13 C CAD CFV . . . E 4 137.659 101.333 49.064 1 45.76 ? CAD CFV 901 A 1 HETATM 14 C CAE CFV . . . E 4 137.908 102.453 49.781 1 51.13 ? CAE CFV 901 A 1 HETATM 15 N NAF CFV . . . E 4 136.926 103.216 50.125 1 52.76 ? NAF CFV 901 A 1 HETATM 16 N NAG CFV . . . E 4 139.127 102.779 50.128 1 51.03 ? NAG CFV 901 A 1 HETATM 17 C CAH CFV . . . E 4 140.133 102.017 49.79 1 54.06 ? CAH CFV 901 A 1 HETATM 18 O OAI CFV . . . E 4 141.371 102.318 50.128 1 52.98 ? OAI CFV 901 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 18 #