data_3EOZ # _model_server_result.job_id Zrnkf-IxVk8ZeVJ8CLx69w _model_server_result.datetime_utc '2024-12-22 06:08:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3eoz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":218}' # _entry.id 3EOZ # _exptl.entry_id 3EOZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3EOZ _cell.length_a 116.244 _cell.length_b 116.244 _cell.length_c 81.986 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EOZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1,2 A,B,C,D,E,F,G,H,I 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 76 A ASP 76 1_555 A N MSE 77 A MSE 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C MSE 77 A MSE 77 1_555 A N ILE 78 A ILE 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 B C ASP 76 B ASP 76 1_555 B N MSE 77 B MSE 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale4 B C MSE 77 B MSE 77 1_555 B N ILE 78 B ILE 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3EOZ _atom_sites.fract_transf_matrix[1][1] 0.008603 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008603 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012197 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 215 1 GOL GOL . D 3 PO4 B 1 215 1 PO4 PO4 . E 3 PO4 B 1 216 2 PO4 PO4 . F 2 GOL B 1 217 1 GOL GOL . G 2 GOL B 1 218 1 GOL GOL . H 4 HOH A 1 216 3 HOH HOH . H 4 HOH A 2 217 5 HOH HOH . H 4 HOH A 3 218 8 HOH HOH . H 4 HOH A 4 219 11 HOH HOH . H 4 HOH A 5 220 13 HOH HOH . H 4 HOH A 6 221 14 HOH HOH . H 4 HOH A 7 222 16 HOH HOH . H 4 HOH A 8 223 17 HOH HOH . H 4 HOH A 9 224 19 HOH HOH . H 4 HOH A 10 225 20 HOH HOH . H 4 HOH A 11 226 22 HOH HOH . H 4 HOH A 12 227 23 HOH HOH . H 4 HOH A 13 228 24 HOH HOH . H 4 HOH A 14 229 26 HOH HOH . H 4 HOH A 15 230 27 HOH HOH . H 4 HOH A 16 231 29 HOH HOH . H 4 HOH A 17 232 30 HOH HOH . H 4 HOH A 18 233 31 HOH HOH . H 4 HOH A 19 234 33 HOH HOH . H 4 HOH A 20 235 35 HOH HOH . H 4 HOH A 21 236 36 HOH HOH . H 4 HOH A 22 237 37 HOH HOH . H 4 HOH A 23 238 38 HOH HOH . H 4 HOH A 24 239 40 HOH HOH . H 4 HOH A 25 240 41 HOH HOH . H 4 HOH A 26 241 42 HOH HOH . H 4 HOH A 27 242 43 HOH HOH . H 4 HOH A 28 243 44 HOH HOH . H 4 HOH A 29 244 46 HOH HOH . H 4 HOH A 30 245 47 HOH HOH . H 4 HOH A 31 246 49 HOH HOH . H 4 HOH A 32 247 56 HOH HOH . H 4 HOH A 33 248 57 HOH HOH . H 4 HOH A 34 249 59 HOH HOH . H 4 HOH A 35 250 60 HOH HOH . H 4 HOH A 36 251 66 HOH HOH . H 4 HOH A 37 252 68 HOH HOH . H 4 HOH A 38 253 71 HOH HOH . H 4 HOH A 39 254 73 HOH HOH . H 4 HOH A 40 255 77 HOH HOH . H 4 HOH A 41 256 79 HOH HOH . H 4 HOH A 42 257 80 HOH HOH . H 4 HOH A 43 258 82 HOH HOH . H 4 HOH A 44 259 85 HOH HOH . H 4 HOH A 45 260 88 HOH HOH . H 4 HOH A 46 261 90 HOH HOH . H 4 HOH A 47 262 92 HOH HOH . H 4 HOH A 48 263 93 HOH HOH . H 4 HOH A 49 264 94 HOH HOH . H 4 HOH A 50 265 99 HOH HOH . H 4 HOH A 51 266 101 HOH HOH . H 4 HOH A 52 267 55 HOH HOH . I 4 HOH B 1 219 1 HOH HOH . I 4 HOH B 2 220 2 HOH HOH . I 4 HOH B 3 221 4 HOH HOH . I 4 HOH B 4 222 6 HOH HOH . I 4 HOH B 5 223 7 HOH HOH . I 4 HOH B 6 224 9 HOH HOH . I 4 HOH B 7 225 10 HOH HOH . I 4 HOH B 8 226 12 HOH HOH . I 4 HOH B 9 227 15 HOH HOH . I 4 HOH B 10 228 18 HOH HOH . I 4 HOH B 11 229 21 HOH HOH . I 4 HOH B 12 230 25 HOH HOH . I 4 HOH B 13 231 28 HOH HOH . I 4 HOH B 14 232 32 HOH HOH . I 4 HOH B 15 233 34 HOH HOH . I 4 HOH B 16 234 39 HOH HOH . I 4 HOH B 17 235 45 HOH HOH . I 4 HOH B 18 236 48 HOH HOH . I 4 HOH B 19 237 50 HOH HOH . I 4 HOH B 20 238 51 HOH HOH . I 4 HOH B 21 239 52 HOH HOH . I 4 HOH B 22 240 53 HOH HOH . I 4 HOH B 23 241 54 HOH HOH . I 4 HOH B 24 243 58 HOH HOH . I 4 HOH B 25 244 61 HOH HOH . I 4 HOH B 26 245 62 HOH HOH . I 4 HOH B 27 246 63 HOH HOH . I 4 HOH B 28 247 64 HOH HOH . I 4 HOH B 29 248 65 HOH HOH . I 4 HOH B 30 249 67 HOH HOH . I 4 HOH B 31 250 69 HOH HOH . I 4 HOH B 32 251 70 HOH HOH . I 4 HOH B 33 252 72 HOH HOH . I 4 HOH B 34 253 74 HOH HOH . I 4 HOH B 35 254 75 HOH HOH . I 4 HOH B 36 255 76 HOH HOH . I 4 HOH B 37 256 78 HOH HOH . I 4 HOH B 38 257 81 HOH HOH . I 4 HOH B 39 258 83 HOH HOH . I 4 HOH B 40 259 84 HOH HOH . I 4 HOH B 41 260 86 HOH HOH . I 4 HOH B 42 261 87 HOH HOH . I 4 HOH B 43 262 89 HOH HOH . I 4 HOH B 44 263 91 HOH HOH . I 4 HOH B 45 264 95 HOH HOH . I 4 HOH B 46 265 96 HOH HOH . I 4 HOH B 47 266 97 HOH HOH . I 4 HOH B 48 267 98 HOH HOH . I 4 HOH B 49 268 100 HOH HOH . I 4 HOH B 50 269 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 2 12.223 4.9 -15.356 1 72.69 ? C1 GOL 218 B 1 HETATM 2 O O1 GOL . . . G 2 12.016 5.564 -16.586 1 72.74 ? O1 GOL 218 B 1 HETATM 3 C C2 GOL . . . G 2 13.61 4.267 -15.368 1 72.22 ? C2 GOL 218 B 1 HETATM 4 O O2 GOL . . . G 2 13.61 3.173 -16.25 1 71.71 ? O2 GOL 218 B 1 HETATM 5 C C3 GOL . . . G 2 14.003 3.764 -13.984 1 71.55 ? C3 GOL 218 B 1 HETATM 6 O O3 GOL . . . G 2 13.152 2.703 -13.629 1 71.34 ? O3 GOL 218 B 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 225 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #