data_3EP4
#
_model_server_result.job_id            G3M3zESMyRsKMPzi5fkP2g 
_model_server_result.datetime_utc      '2024-11-27 00:52:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ep4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":68}' 
#
_entry.id    3EP4 
#
_exptl.entry_id    3EP4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              88.062 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PYRUVIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.84 
_cell.angle_gamma         90 
_cell.entry_id            3EP4 
_cell.length_a            90.706 
_cell.length_b            55.897 
_cell.length_c            74.329 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3EP4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            C 
_struct_conn.ptnr1_label_atom_id            C 
_struct_conn.ptnr1_label_comp_id            PYR 
_struct_conn.ptnr1_label_seq_id             . 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             PYR 
_struct_conn.ptnr1_auth_seq_id              68 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            N 
_struct_conn.ptnr2_label_comp_id            SER 
_struct_conn.ptnr2_label_seq_id             1 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             SER 
_struct_conn.ptnr2_auth_seq_id              69 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.529 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C3 H4 O3' 
_chem_comp.formula_weight    88.062 
_chem_comp.id                PYR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PYRUVIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O PYR doub 277 n n 
C OXT PYR sing 278 n n 
C CA PYR sing 279 n n 
OXT HXT PYR sing 280 n n 
CA O3 PYR doub 281 n n 
CA CB PYR sing 282 n n 
CB HB1 PYR sing 283 n n 
CB HB2 PYR sing 284 n n 
CB HB3 PYR sing 285 n n 
#
_atom_sites.entry_id                     3EP4 
_atom_sites.fract_transf_matrix[1][1]    0.011025 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003977 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01789 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014302 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 PYR A 1 68 68 PYR PYR . 
D 4 TRS A 1 368 368 TRS TRS . 
E 5 HOH B 1 371 371 HOH HOH . 
E 5 HOH B 2 373 373 HOH HOH . 
E 5 HOH B 3 374 374 HOH HOH . 
E 5 HOH B 4 376 376 HOH HOH . 
E 5 HOH B 5 396 396 HOH HOH . 
E 5 HOH B 6 397 397 HOH HOH . 
E 5 HOH B 7 399 399 HOH HOH . 
E 5 HOH B 8 403 403 HOH HOH . 
E 5 HOH B 9 406 406 HOH HOH . 
E 5 HOH B 10 410 410 HOH HOH . 
E 5 HOH B 11 418 418 HOH HOH . 
E 5 HOH B 12 421 421 HOH HOH . 
E 5 HOH B 13 435 435 HOH HOH . 
E 5 HOH B 14 438 438 HOH HOH . 
E 5 HOH B 15 445 445 HOH HOH . 
E 5 HOH B 16 448 448 HOH HOH . 
E 5 HOH B 17 457 457 HOH HOH . 
E 5 HOH B 18 460 460 HOH HOH . 
E 5 HOH B 19 467 467 HOH HOH . 
E 5 HOH B 20 468 468 HOH HOH . 
E 5 HOH B 21 476 476 HOH HOH . 
E 5 HOH B 22 482 482 HOH HOH . 
E 5 HOH B 23 483 483 HOH HOH . 
E 5 HOH B 24 487 487 HOH HOH . 
E 5 HOH B 25 490 490 HOH HOH . 
E 5 HOH B 26 492 492 HOH HOH . 
E 5 HOH B 27 493 493 HOH HOH . 
E 5 HOH B 28 496 496 HOH HOH . 
E 5 HOH B 29 503 503 HOH HOH . 
E 5 HOH B 30 506 506 HOH HOH . 
E 5 HOH B 31 510 510 HOH HOH . 
E 5 HOH B 32 511 511 HOH HOH . 
E 5 HOH B 33 512 512 HOH HOH . 
E 5 HOH B 34 514 514 HOH HOH . 
E 5 HOH B 35 516 516 HOH HOH . 
E 5 HOH B 36 517 517 HOH HOH . 
F 5 HOH A 1 370 370 HOH HOH . 
F 5 HOH A 2 372 372 HOH HOH . 
F 5 HOH A 3 375 375 HOH HOH . 
F 5 HOH A 4 377 377 HOH HOH . 
F 5 HOH A 5 378 378 HOH HOH . 
F 5 HOH A 6 379 379 HOH HOH . 
F 5 HOH A 7 380 380 HOH HOH . 
F 5 HOH A 8 381 381 HOH HOH . 
F 5 HOH A 9 382 382 HOH HOH . 
F 5 HOH A 10 384 384 HOH HOH . 
F 5 HOH A 11 385 385 HOH HOH . 
F 5 HOH A 12 386 386 HOH HOH . 
F 5 HOH A 13 387 387 HOH HOH . 
F 5 HOH A 14 388 388 HOH HOH . 
F 5 HOH A 15 389 389 HOH HOH . 
F 5 HOH A 16 390 390 HOH HOH . 
F 5 HOH A 17 391 391 HOH HOH . 
F 5 HOH A 18 392 392 HOH HOH . 
F 5 HOH A 19 393 393 HOH HOH . 
F 5 HOH A 20 394 394 HOH HOH . 
F 5 HOH A 21 395 395 HOH HOH . 
F 5 HOH A 22 398 398 HOH HOH . 
F 5 HOH A 23 400 400 HOH HOH . 
F 5 HOH A 24 401 401 HOH HOH . 
F 5 HOH A 25 402 402 HOH HOH . 
F 5 HOH A 26 404 404 HOH HOH . 
F 5 HOH A 27 405 405 HOH HOH . 
F 5 HOH A 28 407 407 HOH HOH . 
F 5 HOH A 29 408 408 HOH HOH . 
F 5 HOH A 30 409 409 HOH HOH . 
F 5 HOH A 31 411 411 HOH HOH . 
F 5 HOH A 32 412 412 HOH HOH . 
F 5 HOH A 33 413 413 HOH HOH . 
F 5 HOH A 34 414 414 HOH HOH . 
F 5 HOH A 35 415 415 HOH HOH . 
F 5 HOH A 36 416 416 HOH HOH . 
F 5 HOH A 37 417 417 HOH HOH . 
F 5 HOH A 38 419 419 HOH HOH . 
F 5 HOH A 39 420 420 HOH HOH . 
F 5 HOH A 40 422 422 HOH HOH . 
F 5 HOH A 41 423 423 HOH HOH . 
F 5 HOH A 42 424 424 HOH HOH . 
F 5 HOH A 43 425 425 HOH HOH . 
F 5 HOH A 44 426 426 HOH HOH . 
F 5 HOH A 45 427 427 HOH HOH . 
F 5 HOH A 46 428 428 HOH HOH . 
F 5 HOH A 47 429 429 HOH HOH . 
F 5 HOH A 48 430 430 HOH HOH . 
F 5 HOH A 49 431 431 HOH HOH . 
F 5 HOH A 50 432 432 HOH HOH . 
F 5 HOH A 51 433 433 HOH HOH . 
F 5 HOH A 52 436 436 HOH HOH . 
F 5 HOH A 53 437 437 HOH HOH . 
F 5 HOH A 54 439 439 HOH HOH . 
F 5 HOH A 55 440 440 HOH HOH . 
F 5 HOH A 56 441 441 HOH HOH . 
F 5 HOH A 57 442 442 HOH HOH . 
F 5 HOH A 58 443 443 HOH HOH . 
F 5 HOH A 59 446 446 HOH HOH . 
F 5 HOH A 60 447 447 HOH HOH . 
F 5 HOH A 61 449 449 HOH HOH . 
F 5 HOH A 62 450 450 HOH HOH . 
F 5 HOH A 63 451 451 HOH HOH . 
F 5 HOH A 64 452 452 HOH HOH . 
F 5 HOH A 65 453 453 HOH HOH . 
F 5 HOH A 66 454 454 HOH HOH . 
F 5 HOH A 67 455 455 HOH HOH . 
F 5 HOH A 68 456 456 HOH HOH . 
F 5 HOH A 69 459 459 HOH HOH . 
F 5 HOH A 70 461 461 HOH HOH . 
F 5 HOH A 71 462 462 HOH HOH . 
F 5 HOH A 72 463 463 HOH HOH . 
F 5 HOH A 73 464 464 HOH HOH . 
F 5 HOH A 74 466 466 HOH HOH . 
F 5 HOH A 75 469 469 HOH HOH . 
F 5 HOH A 76 470 470 HOH HOH . 
F 5 HOH A 77 471 471 HOH HOH . 
F 5 HOH A 78 472 472 HOH HOH . 
F 5 HOH A 79 473 473 HOH HOH . 
F 5 HOH A 80 474 474 HOH HOH . 
F 5 HOH A 81 475 475 HOH HOH . 
F 5 HOH A 82 477 477 HOH HOH . 
F 5 HOH A 83 478 478 HOH HOH . 
F 5 HOH A 84 479 479 HOH HOH . 
F 5 HOH A 85 480 480 HOH HOH . 
F 5 HOH A 86 481 481 HOH HOH . 
F 5 HOH A 87 484 484 HOH HOH . 
F 5 HOH A 88 485 485 HOH HOH . 
F 5 HOH A 89 486 486 HOH HOH . 
F 5 HOH A 90 488 488 HOH HOH . 
F 5 HOH A 91 489 489 HOH HOH . 
F 5 HOH A 92 491 491 HOH HOH . 
F 5 HOH A 93 494 494 HOH HOH . 
F 5 HOH A 94 495 495 HOH HOH . 
F 5 HOH A 95 497 497 HOH HOH . 
F 5 HOH A 96 498 498 HOH HOH . 
F 5 HOH A 97 499 499 HOH HOH . 
F 5 HOH A 98 500 500 HOH HOH . 
F 5 HOH A 99 502 502 HOH HOH . 
F 5 HOH A 100 504 504 HOH HOH . 
F 5 HOH A 101 505 505 HOH HOH . 
F 5 HOH A 102 507 507 HOH HOH . 
F 5 HOH A 103 508 508 HOH HOH . 
F 5 HOH A 104 509 509 HOH HOH . 
F 5 HOH A 105 513 513 HOH HOH . 
F 5 HOH A 106 515 515 HOH HOH . 
F 5 HOH A 107 518 518 HOH HOH . 
F 5 HOH A 108 519 519 HOH HOH . 
F 5 HOH A 109 520 520 HOH HOH . 
F 5 HOH A 110 521 521 HOH HOH . 
F 5 HOH A 111 522 522 HOH HOH . 
F 5 HOH A 112 523 523 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C PYR . . . C 3 -71.47 -12.499 11.913 1 43.54 ? C PYR 68 A 1 
HETATM 2 O O PYR . . . C 3 -72.008 -12.444 10.823 1 40.37 ? O PYR 68 A 1 
HETATM 3 C CA PYR . . . C 3 -70.26 -11.758 12.138 1 50.49 ? CA PYR 68 A 1 
HETATM 4 O O3 PYR . . . C 3 -69.848 -11.092 11.199 1 58.03 ? O3 PYR 68 A 1 
HETATM 5 C CB PYR . . . C 3 -69.378 -11.648 13.337 1 52.31 ? CB PYR 68 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           5 
#