data_3EP5 # _model_server_result.job_id zG8Tks5Z_G0PbRPRm5v-4Q _model_server_result.datetime_utc '2024-11-23 07:13:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ep5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":350}' # _entry.id 3EP5 # _exptl.entry_id 3EP5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 60.055 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UREA _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.73 _cell.angle_gamma 90 _cell.entry_id 3EP5 _cell.length_a 90.569 _cell.length_b 56.255 _cell.length_c 74.05 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EP5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id C _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id PYR _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id PYR _struct_conn.ptnr1_auth_seq_id 68 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id SER _struct_conn.ptnr2_label_seq_id 1 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id SER _struct_conn.ptnr2_auth_seq_id 69 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.529 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C H4 N2 O' _chem_comp.formula_weight 60.055 _chem_comp.id URE _chem_comp.mon_nstd_flag . _chem_comp.name UREA _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O URE doub 386 n n C N1 URE sing 387 n n C N2 URE sing 388 n n N1 HN11 URE sing 389 n n N1 HN12 URE sing 390 n n N2 HN21 URE sing 391 n n N2 HN22 URE sing 392 n n # _atom_sites.entry_id 3EP5 _atom_sites.fract_transf_matrix[1][1] 0.011041 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003959 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017776 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014346 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PYR A 1 68 68 PYR PYR . D 4 URE A 1 350 350 URE URE . E 5 TRS A 1 368 368 TRS TRS . F 6 HOH B 1 68 6 HOH HOH . F 6 HOH B 2 69 7 HOH HOH . F 6 HOH B 3 70 13 HOH HOH . F 6 HOH B 4 71 24 HOH HOH . F 6 HOH B 5 72 27 HOH HOH . F 6 HOH B 6 73 29 HOH HOH . F 6 HOH B 7 74 35 HOH HOH . F 6 HOH B 8 75 36 HOH HOH . F 6 HOH B 9 76 40 HOH HOH . F 6 HOH B 10 77 41 HOH HOH . F 6 HOH B 11 78 42 HOH HOH . F 6 HOH B 12 79 66 HOH HOH . F 6 HOH B 13 80 68 HOH HOH . F 6 HOH B 14 81 70 HOH HOH . F 6 HOH B 15 82 71 HOH HOH . F 6 HOH B 16 83 72 HOH HOH . F 6 HOH B 17 84 73 HOH HOH . F 6 HOH B 18 85 74 HOH HOH . F 6 HOH B 19 86 75 HOH HOH . F 6 HOH B 20 87 77 HOH HOH . F 6 HOH B 21 88 78 HOH HOH . F 6 HOH B 22 89 79 HOH HOH . F 6 HOH B 23 90 80 HOH HOH . F 6 HOH B 24 91 114 HOH HOH . G 6 HOH A 1 369 1 HOH HOH . G 6 HOH A 2 370 2 HOH HOH . G 6 HOH A 3 371 3 HOH HOH . G 6 HOH A 4 372 4 HOH HOH . G 6 HOH A 5 373 5 HOH HOH . G 6 HOH A 6 374 9 HOH HOH . G 6 HOH A 7 375 10 HOH HOH . G 6 HOH A 8 376 11 HOH HOH . G 6 HOH A 9 377 12 HOH HOH . G 6 HOH A 10 378 14 HOH HOH . G 6 HOH A 11 379 16 HOH HOH . G 6 HOH A 12 380 17 HOH HOH . G 6 HOH A 13 381 18 HOH HOH . G 6 HOH A 14 382 19 HOH HOH . G 6 HOH A 15 383 21 HOH HOH . G 6 HOH A 16 384 22 HOH HOH . G 6 HOH A 17 385 23 HOH HOH . G 6 HOH A 18 386 25 HOH HOH . G 6 HOH A 19 387 26 HOH HOH . G 6 HOH A 20 388 28 HOH HOH . G 6 HOH A 21 389 30 HOH HOH . G 6 HOH A 22 390 31 HOH HOH . G 6 HOH A 23 391 32 HOH HOH . G 6 HOH A 24 392 33 HOH HOH . G 6 HOH A 25 393 34 HOH HOH . G 6 HOH A 26 394 37 HOH HOH . G 6 HOH A 27 395 38 HOH HOH . G 6 HOH A 28 396 39 HOH HOH . G 6 HOH A 29 397 43 HOH HOH . G 6 HOH A 30 398 44 HOH HOH . G 6 HOH A 31 399 45 HOH HOH . G 6 HOH A 32 400 46 HOH HOH . G 6 HOH A 33 401 47 HOH HOH . G 6 HOH A 34 402 48 HOH HOH . G 6 HOH A 35 403 51 HOH HOH . G 6 HOH A 36 404 52 HOH HOH . G 6 HOH A 37 405 53 HOH HOH . G 6 HOH A 38 406 54 HOH HOH . G 6 HOH A 39 407 55 HOH HOH . G 6 HOH A 40 408 56 HOH HOH . G 6 HOH A 41 409 57 HOH HOH . G 6 HOH A 42 410 58 HOH HOH . G 6 HOH A 43 411 59 HOH HOH . G 6 HOH A 44 412 60 HOH HOH . G 6 HOH A 45 413 61 HOH HOH . G 6 HOH A 46 414 62 HOH HOH . G 6 HOH A 47 415 63 HOH HOH . G 6 HOH A 48 416 64 HOH HOH . G 6 HOH A 49 417 65 HOH HOH . G 6 HOH A 50 418 67 HOH HOH . G 6 HOH A 51 419 69 HOH HOH . G 6 HOH A 52 420 76 HOH HOH . G 6 HOH A 53 421 81 HOH HOH . G 6 HOH A 54 422 82 HOH HOH . G 6 HOH A 55 423 83 HOH HOH . G 6 HOH A 56 424 84 HOH HOH . G 6 HOH A 57 425 86 HOH HOH . G 6 HOH A 58 426 87 HOH HOH . G 6 HOH A 59 427 88 HOH HOH . G 6 HOH A 60 428 89 HOH HOH . G 6 HOH A 61 429 90 HOH HOH . G 6 HOH A 62 430 91 HOH HOH . G 6 HOH A 63 431 92 HOH HOH . G 6 HOH A 64 432 93 HOH HOH . G 6 HOH A 65 433 94 HOH HOH . G 6 HOH A 66 434 95 HOH HOH . G 6 HOH A 67 435 96 HOH HOH . G 6 HOH A 68 436 99 HOH HOH . G 6 HOH A 69 437 100 HOH HOH . G 6 HOH A 70 438 101 HOH HOH . G 6 HOH A 71 439 102 HOH HOH . G 6 HOH A 72 440 103 HOH HOH . G 6 HOH A 73 441 107 HOH HOH . G 6 HOH A 74 442 108 HOH HOH . G 6 HOH A 75 443 109 HOH HOH . G 6 HOH A 76 444 110 HOH HOH . G 6 HOH A 77 445 111 HOH HOH . G 6 HOH A 78 446 112 HOH HOH . G 6 HOH A 79 447 113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C URE . . . D 4 8.128 -16.38 59.411 1 46.41 ? C URE 350 A 1 HETATM 2 O O URE . . . D 4 7.783 -15.213 59.168 1 42.84 ? O URE 350 A 1 HETATM 3 N N1 URE . . . D 4 9.43 -16.774 59.195 1 45.42 ? N1 URE 350 A 1 HETATM 4 N N2 URE . . . D 4 7.21 -17.279 59.897 1 43.53 ? N2 URE 350 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #