data_3EP8
#
_model_server_result.job_id            bSn7M3oFF7GzGzdYTj3ZLw 
_model_server_result.datetime_utc      '2024-11-13 09:37:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ep8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":68}' 
#
_entry.id    3EP8 
#
_exptl.entry_id    3EP8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              88.062 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PYRUVIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.39 
_cell.angle_gamma         90 
_cell.entry_id            3EP8 
_cell.length_a            100.146 
_cell.length_b            51.073 
_cell.length_c            68.947 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3EP8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C PYR . A PYR 68 1_555 B N SER 1 A SER 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.362 ? 
covale ? covale2 C CA PYR . A PYR 68 1_555 D N SMM . A SMM 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.303 ? 
#
_chem_comp.formula           'C3 H4 O3' 
_chem_comp.formula_weight    88.062 
_chem_comp.id                PYR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PYRUVIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O PYR doub 277 n n 
C OXT PYR sing 278 n n 
C CA PYR sing 279 n n 
OXT HXT PYR sing 280 n n 
CA O3 PYR doub 281 n n 
CA CB PYR sing 282 n n 
CB HB1 PYR sing 283 n n 
CB HB2 PYR sing 284 n n 
CB HB3 PYR sing 285 n n 
#
_atom_sites.entry_id                     3EP8 
_atom_sites.fract_transf_matrix[1][1]    0.009985 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002749 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01958 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015044 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 PYR A 1 68 68 PYR PYR . 
D 4 SMM A 1 368 368 SMM SMM . 
E 5 HOH B 1 330 330 HOH HOH . 
E 5 HOH B 2 338 338 HOH HOH . 
E 5 HOH B 3 340 340 HOH HOH . 
E 5 HOH B 4 341 341 HOH HOH . 
E 5 HOH B 5 347 347 HOH HOH . 
E 5 HOH B 6 355 355 HOH HOH . 
E 5 HOH B 7 356 356 HOH HOH . 
E 5 HOH B 8 366 366 HOH HOH . 
E 5 HOH B 9 367 367 HOH HOH . 
E 5 HOH B 10 369 369 HOH HOH . 
E 5 HOH B 11 370 370 HOH HOH . 
E 5 HOH B 12 375 375 HOH HOH . 
E 5 HOH B 13 386 386 HOH HOH . 
E 5 HOH B 14 389 389 HOH HOH . 
E 5 HOH B 15 390 390 HOH HOH . 
E 5 HOH B 16 392 392 HOH HOH . 
E 5 HOH B 17 394 394 HOH HOH . 
E 5 HOH B 18 395 395 HOH HOH . 
E 5 HOH B 19 405 405 HOH HOH . 
E 5 HOH B 20 406 406 HOH HOH . 
E 5 HOH B 21 407 407 HOH HOH . 
E 5 HOH B 22 410 410 HOH HOH . 
E 5 HOH B 23 430 430 HOH HOH . 
E 5 HOH B 24 433 433 HOH HOH . 
E 5 HOH B 25 441 441 HOH HOH . 
E 5 HOH B 26 442 442 HOH HOH . 
E 5 HOH B 27 450 450 HOH HOH . 
E 5 HOH B 28 455 455 HOH HOH . 
E 5 HOH B 29 462 462 HOH HOH . 
E 5 HOH B 30 475 475 HOH HOH . 
E 5 HOH B 31 486 486 HOH HOH . 
E 5 HOH B 32 492 492 HOH HOH . 
E 5 HOH B 33 493 493 HOH HOH . 
E 5 HOH B 34 496 496 HOH HOH . 
E 5 HOH B 35 512 512 HOH HOH . 
E 5 HOH B 36 525 525 HOH HOH . 
E 5 HOH B 37 533 533 HOH HOH . 
E 5 HOH B 38 541 541 HOH HOH . 
E 5 HOH B 39 542 542 HOH HOH . 
E 5 HOH B 40 543 543 HOH HOH . 
E 5 HOH B 41 544 544 HOH HOH . 
E 5 HOH B 42 545 545 HOH HOH . 
E 5 HOH B 43 546 546 HOH HOH . 
F 5 HOH A 1 331 331 HOH HOH . 
F 5 HOH A 2 332 332 HOH HOH . 
F 5 HOH A 3 333 333 HOH HOH . 
F 5 HOH A 4 334 334 HOH HOH . 
F 5 HOH A 5 335 335 HOH HOH . 
F 5 HOH A 6 336 336 HOH HOH . 
F 5 HOH A 7 337 337 HOH HOH . 
F 5 HOH A 8 339 339 HOH HOH . 
F 5 HOH A 9 342 342 HOH HOH . 
F 5 HOH A 10 343 343 HOH HOH . 
F 5 HOH A 11 344 344 HOH HOH . 
F 5 HOH A 12 345 345 HOH HOH . 
F 5 HOH A 13 348 348 HOH HOH . 
F 5 HOH A 14 349 349 HOH HOH . 
F 5 HOH A 15 350 350 HOH HOH . 
F 5 HOH A 16 351 351 HOH HOH . 
F 5 HOH A 17 352 352 HOH HOH . 
F 5 HOH A 18 353 353 HOH HOH . 
F 5 HOH A 19 354 354 HOH HOH . 
F 5 HOH A 20 357 357 HOH HOH . 
F 5 HOH A 21 358 358 HOH HOH . 
F 5 HOH A 22 359 359 HOH HOH . 
F 5 HOH A 23 360 360 HOH HOH . 
F 5 HOH A 24 361 361 HOH HOH . 
F 5 HOH A 25 362 362 HOH HOH . 
F 5 HOH A 26 363 363 HOH HOH . 
F 5 HOH A 27 365 365 HOH HOH . 
F 5 HOH A 28 371 371 HOH HOH . 
F 5 HOH A 29 373 373 HOH HOH . 
F 5 HOH A 30 374 374 HOH HOH . 
F 5 HOH A 31 376 376 HOH HOH . 
F 5 HOH A 32 377 377 HOH HOH . 
F 5 HOH A 33 379 379 HOH HOH . 
F 5 HOH A 34 380 380 HOH HOH . 
F 5 HOH A 35 381 381 HOH HOH . 
F 5 HOH A 36 382 382 HOH HOH . 
F 5 HOH A 37 384 384 HOH HOH . 
F 5 HOH A 38 385 385 HOH HOH . 
F 5 HOH A 39 387 387 HOH HOH . 
F 5 HOH A 40 388 388 HOH HOH . 
F 5 HOH A 41 393 393 HOH HOH . 
F 5 HOH A 42 396 396 HOH HOH . 
F 5 HOH A 43 397 397 HOH HOH . 
F 5 HOH A 44 398 398 HOH HOH . 
F 5 HOH A 45 399 399 HOH HOH . 
F 5 HOH A 46 400 400 HOH HOH . 
F 5 HOH A 47 401 401 HOH HOH . 
F 5 HOH A 48 402 402 HOH HOH . 
F 5 HOH A 49 403 403 HOH HOH . 
F 5 HOH A 50 404 404 HOH HOH . 
F 5 HOH A 51 408 408 HOH HOH . 
F 5 HOH A 52 409 409 HOH HOH . 
F 5 HOH A 53 411 411 HOH HOH . 
F 5 HOH A 54 412 412 HOH HOH . 
F 5 HOH A 55 413 413 HOH HOH . 
F 5 HOH A 56 414 414 HOH HOH . 
F 5 HOH A 57 415 415 HOH HOH . 
F 5 HOH A 58 416 416 HOH HOH . 
F 5 HOH A 59 417 417 HOH HOH . 
F 5 HOH A 60 418 418 HOH HOH . 
F 5 HOH A 61 419 419 HOH HOH . 
F 5 HOH A 62 420 420 HOH HOH . 
F 5 HOH A 63 421 421 HOH HOH . 
F 5 HOH A 64 422 422 HOH HOH . 
F 5 HOH A 65 423 423 HOH HOH . 
F 5 HOH A 66 424 424 HOH HOH . 
F 5 HOH A 67 425 425 HOH HOH . 
F 5 HOH A 68 426 426 HOH HOH . 
F 5 HOH A 69 427 427 HOH HOH . 
F 5 HOH A 70 428 428 HOH HOH . 
F 5 HOH A 71 429 429 HOH HOH . 
F 5 HOH A 72 431 431 HOH HOH . 
F 5 HOH A 73 432 432 HOH HOH . 
F 5 HOH A 74 434 434 HOH HOH . 
F 5 HOH A 75 435 435 HOH HOH . 
F 5 HOH A 76 436 436 HOH HOH . 
F 5 HOH A 77 437 437 HOH HOH . 
F 5 HOH A 78 438 438 HOH HOH . 
F 5 HOH A 79 439 439 HOH HOH . 
F 5 HOH A 80 440 440 HOH HOH . 
F 5 HOH A 81 443 443 HOH HOH . 
F 5 HOH A 82 444 444 HOH HOH . 
F 5 HOH A 83 445 445 HOH HOH . 
F 5 HOH A 84 446 446 HOH HOH . 
F 5 HOH A 85 447 447 HOH HOH . 
F 5 HOH A 86 448 448 HOH HOH . 
F 5 HOH A 87 449 449 HOH HOH . 
F 5 HOH A 88 451 451 HOH HOH . 
F 5 HOH A 89 452 452 HOH HOH . 
F 5 HOH A 90 453 453 HOH HOH . 
F 5 HOH A 91 454 454 HOH HOH . 
F 5 HOH A 92 456 456 HOH HOH . 
F 5 HOH A 93 457 457 HOH HOH . 
F 5 HOH A 94 458 458 HOH HOH . 
F 5 HOH A 95 459 459 HOH HOH . 
F 5 HOH A 96 460 460 HOH HOH . 
F 5 HOH A 97 461 461 HOH HOH . 
F 5 HOH A 98 463 463 HOH HOH . 
F 5 HOH A 99 464 464 HOH HOH . 
F 5 HOH A 100 465 465 HOH HOH . 
F 5 HOH A 101 466 466 HOH HOH . 
F 5 HOH A 102 467 467 HOH HOH . 
F 5 HOH A 103 468 468 HOH HOH . 
F 5 HOH A 104 469 469 HOH HOH . 
F 5 HOH A 105 470 470 HOH HOH . 
F 5 HOH A 106 471 471 HOH HOH . 
F 5 HOH A 107 472 472 HOH HOH . 
F 5 HOH A 108 473 473 HOH HOH . 
F 5 HOH A 109 474 474 HOH HOH . 
F 5 HOH A 110 476 476 HOH HOH . 
F 5 HOH A 111 477 477 HOH HOH . 
F 5 HOH A 112 478 478 HOH HOH . 
F 5 HOH A 113 479 479 HOH HOH . 
F 5 HOH A 114 480 480 HOH HOH . 
F 5 HOH A 115 481 481 HOH HOH . 
F 5 HOH A 116 482 482 HOH HOH . 
F 5 HOH A 117 483 483 HOH HOH . 
F 5 HOH A 118 484 484 HOH HOH . 
F 5 HOH A 119 485 485 HOH HOH . 
F 5 HOH A 120 487 487 HOH HOH . 
F 5 HOH A 121 488 488 HOH HOH . 
F 5 HOH A 122 489 489 HOH HOH . 
F 5 HOH A 123 490 490 HOH HOH . 
F 5 HOH A 124 491 491 HOH HOH . 
F 5 HOH A 125 497 497 HOH HOH . 
F 5 HOH A 126 499 499 HOH HOH . 
F 5 HOH A 127 501 501 HOH HOH . 
F 5 HOH A 128 502 502 HOH HOH . 
F 5 HOH A 129 503 503 HOH HOH . 
F 5 HOH A 130 504 504 HOH HOH . 
F 5 HOH A 131 506 506 HOH HOH . 
F 5 HOH A 132 507 507 HOH HOH . 
F 5 HOH A 133 508 508 HOH HOH . 
F 5 HOH A 134 509 509 HOH HOH . 
F 5 HOH A 135 510 510 HOH HOH . 
F 5 HOH A 136 511 511 HOH HOH . 
F 5 HOH A 137 513 513 HOH HOH . 
F 5 HOH A 138 514 514 HOH HOH . 
F 5 HOH A 139 515 515 HOH HOH . 
F 5 HOH A 140 516 516 HOH HOH . 
F 5 HOH A 141 517 517 HOH HOH . 
F 5 HOH A 142 518 518 HOH HOH . 
F 5 HOH A 143 520 520 HOH HOH . 
F 5 HOH A 144 521 521 HOH HOH . 
F 5 HOH A 145 522 522 HOH HOH . 
F 5 HOH A 146 523 523 HOH HOH . 
F 5 HOH A 147 524 524 HOH HOH . 
F 5 HOH A 148 528 528 HOH HOH . 
F 5 HOH A 149 529 529 HOH HOH . 
F 5 HOH A 150 531 531 HOH HOH . 
F 5 HOH A 151 532 532 HOH HOH . 
F 5 HOH A 152 534 534 HOH HOH . 
F 5 HOH A 153 535 535 HOH HOH . 
F 5 HOH A 154 536 536 HOH HOH . 
F 5 HOH A 155 537 537 HOH HOH . 
F 5 HOH A 156 538 538 HOH HOH . 
F 5 HOH A 157 539 539 HOH HOH . 
F 5 HOH A 158 540 540 HOH HOH . 
F 5 HOH A 159 548 548 HOH HOH . 
F 5 HOH A 160 549 549 HOH HOH . 
F 5 HOH A 161 550 550 HOH HOH . 
F 5 HOH A 162 551 551 HOH HOH . 
F 5 HOH A 163 552 552 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C PYR . . . C 3 -41.928 -3.743 76.924 1 14.38 ? C PYR 68 A 1 
HETATM 2 O O PYR . . . C 3 -42.385 -3.854 75.767 1 17.5 ? O PYR 68 A 1 
HETATM 3 C CA PYR . . . C 3 -40.808 -2.8 77.065 1 21.34 ? CA PYR 68 A 1 
HETATM 4 C CB PYR . . . C 3 -40.172 -2.621 78.388 1 24.09 ? CB PYR 68 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#