data_3EP9
#
_model_server_result.job_id            lLyBY7DXQihTXWmXvRSN9A 
_model_server_result.datetime_utc      '2024-11-22 21:50:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ep9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":68}' 
#
_entry.id    3EP9 
#
_exptl.entry_id    3EP9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              88.062 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PYRUVIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.66 
_cell.angle_gamma         90 
_cell.entry_id            3EP9 
_cell.length_a            90.565 
_cell.length_b            55.541 
_cell.length_c            74.307 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3EP9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            C 
_struct_conn.ptnr1_label_atom_id            C 
_struct_conn.ptnr1_label_comp_id            PYR 
_struct_conn.ptnr1_label_seq_id             . 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             PYR 
_struct_conn.ptnr1_auth_seq_id              68 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            N 
_struct_conn.ptnr2_label_comp_id            SER 
_struct_conn.ptnr2_label_seq_id             1 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             SER 
_struct_conn.ptnr2_auth_seq_id              69 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.529 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C3 H4 O3' 
_chem_comp.formula_weight    88.062 
_chem_comp.id                PYR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PYRUVIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O PYR doub 277 n n 
C OXT PYR sing 278 n n 
C CA PYR sing 279 n n 
OXT HXT PYR sing 280 n n 
CA O3 PYR doub 281 n n 
CA CB PYR sing 282 n n 
CB HB1 PYR sing 283 n n 
CB HB2 PYR sing 284 n n 
CB HB3 PYR sing 285 n n 
#
_atom_sites.entry_id                     3EP9 
_atom_sites.fract_transf_matrix[1][1]    0.011042 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003944 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018005 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01429 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 PYR A 1 68 68 PYR PYR . 
D 4 TRS A 1 368 368 TRS TRS . 
E 5 HOH B 1 373 373 HOH HOH . 
E 5 HOH B 2 375 375 HOH HOH . 
E 5 HOH B 3 376 376 HOH HOH . 
E 5 HOH B 4 387 387 HOH HOH . 
E 5 HOH B 5 388 388 HOH HOH . 
E 5 HOH B 6 391 391 HOH HOH . 
E 5 HOH B 7 405 405 HOH HOH . 
E 5 HOH B 8 416 416 HOH HOH . 
E 5 HOH B 9 439 439 HOH HOH . 
E 5 HOH B 10 471 471 HOH HOH . 
E 5 HOH B 11 477 477 HOH HOH . 
E 5 HOH B 12 492 492 HOH HOH . 
E 5 HOH B 13 503 503 HOH HOH . 
E 5 HOH B 14 506 506 HOH HOH . 
E 5 HOH B 15 559 559 HOH HOH . 
E 5 HOH B 16 576 576 HOH HOH . 
E 5 HOH B 17 577 577 HOH HOH . 
E 5 HOH B 18 586 586 HOH HOH . 
E 5 HOH B 19 610 610 HOH HOH . 
E 5 HOH B 20 611 611 HOH HOH . 
F 5 HOH A 1 369 369 HOH HOH . 
F 5 HOH A 2 371 371 HOH HOH . 
F 5 HOH A 3 372 372 HOH HOH . 
F 5 HOH A 4 374 374 HOH HOH . 
F 5 HOH A 5 378 378 HOH HOH . 
F 5 HOH A 6 379 379 HOH HOH . 
F 5 HOH A 7 380 380 HOH HOH . 
F 5 HOH A 8 381 381 HOH HOH . 
F 5 HOH A 9 382 382 HOH HOH . 
F 5 HOH A 10 383 383 HOH HOH . 
F 5 HOH A 11 385 385 HOH HOH . 
F 5 HOH A 12 389 389 HOH HOH . 
F 5 HOH A 13 392 392 HOH HOH . 
F 5 HOH A 14 393 393 HOH HOH . 
F 5 HOH A 15 396 396 HOH HOH . 
F 5 HOH A 16 397 397 HOH HOH . 
F 5 HOH A 17 398 398 HOH HOH . 
F 5 HOH A 18 400 400 HOH HOH . 
F 5 HOH A 19 401 401 HOH HOH . 
F 5 HOH A 20 402 402 HOH HOH . 
F 5 HOH A 21 403 403 HOH HOH . 
F 5 HOH A 22 406 406 HOH HOH . 
F 5 HOH A 23 408 408 HOH HOH . 
F 5 HOH A 24 409 409 HOH HOH . 
F 5 HOH A 25 411 411 HOH HOH . 
F 5 HOH A 26 412 412 HOH HOH . 
F 5 HOH A 27 415 415 HOH HOH . 
F 5 HOH A 28 417 417 HOH HOH . 
F 5 HOH A 29 418 418 HOH HOH . 
F 5 HOH A 30 422 422 HOH HOH . 
F 5 HOH A 31 423 423 HOH HOH . 
F 5 HOH A 32 424 424 HOH HOH . 
F 5 HOH A 33 425 425 HOH HOH . 
F 5 HOH A 34 427 427 HOH HOH . 
F 5 HOH A 35 429 429 HOH HOH . 
F 5 HOH A 36 430 430 HOH HOH . 
F 5 HOH A 37 436 436 HOH HOH . 
F 5 HOH A 38 437 437 HOH HOH . 
F 5 HOH A 39 438 438 HOH HOH . 
F 5 HOH A 40 441 441 HOH HOH . 
F 5 HOH A 41 445 445 HOH HOH . 
F 5 HOH A 42 447 447 HOH HOH . 
F 5 HOH A 43 454 454 HOH HOH . 
F 5 HOH A 44 456 456 HOH HOH . 
F 5 HOH A 45 458 458 HOH HOH . 
F 5 HOH A 46 462 462 HOH HOH . 
F 5 HOH A 47 465 465 HOH HOH . 
F 5 HOH A 48 470 470 HOH HOH . 
F 5 HOH A 49 472 472 HOH HOH . 
F 5 HOH A 50 476 476 HOH HOH . 
F 5 HOH A 51 480 480 HOH HOH . 
F 5 HOH A 52 481 481 HOH HOH . 
F 5 HOH A 53 482 482 HOH HOH . 
F 5 HOH A 54 486 486 HOH HOH . 
F 5 HOH A 55 488 488 HOH HOH . 
F 5 HOH A 56 489 489 HOH HOH . 
F 5 HOH A 57 490 490 HOH HOH . 
F 5 HOH A 58 493 493 HOH HOH . 
F 5 HOH A 59 500 500 HOH HOH . 
F 5 HOH A 60 501 501 HOH HOH . 
F 5 HOH A 61 505 505 HOH HOH . 
F 5 HOH A 62 507 507 HOH HOH . 
F 5 HOH A 63 511 511 HOH HOH . 
F 5 HOH A 64 517 517 HOH HOH . 
F 5 HOH A 65 518 518 HOH HOH . 
F 5 HOH A 66 519 519 HOH HOH . 
F 5 HOH A 67 521 521 HOH HOH . 
F 5 HOH A 68 524 524 HOH HOH . 
F 5 HOH A 69 526 526 HOH HOH . 
F 5 HOH A 70 535 535 HOH HOH . 
F 5 HOH A 71 543 543 HOH HOH . 
F 5 HOH A 72 555 555 HOH HOH . 
F 5 HOH A 73 568 568 HOH HOH . 
F 5 HOH A 74 569 569 HOH HOH . 
F 5 HOH A 75 570 570 HOH HOH . 
F 5 HOH A 76 575 575 HOH HOH . 
F 5 HOH A 77 587 587 HOH HOH . 
F 5 HOH A 78 588 588 HOH HOH . 
F 5 HOH A 79 591 591 HOH HOH . 
F 5 HOH A 80 600 600 HOH HOH . 
F 5 HOH A 81 606 606 HOH HOH . 
F 5 HOH A 82 608 608 HOH HOH . 
F 5 HOH A 83 609 609 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C PYR . . . C 3 -38.642 -8.962 47.036 1 53.51 ? C PYR 68 A 1 
HETATM 2 O O PYR . . . C 3 -39.18 -8.907 45.946 1 49.8 ? O PYR 68 A 1 
HETATM 3 C CA PYR . . . C 3 -37.432 -8.221 47.261 1 55.47 ? CA PYR 68 A 1 
HETATM 4 O O3 PYR . . . C 3 -37.02 -7.555 46.322 1 58.38 ? O3 PYR 68 A 1 
HETATM 5 C CB PYR . . . C 3 -36.55 -8.111 48.46 1 56.79 ? CB PYR 68 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           5 
#