data_3EPA
#
_model_server_result.job_id            fxqQpT3yFf1wPytzKSrJgA 
_model_server_result.datetime_utc      '2024-10-18 16:22:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3epa 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":350}' 
#
_entry.id    3EPA 
#
_exptl.entry_id    3EPA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              88.151 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,4-DIAMINOBUTANE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.45 
_cell.angle_gamma         90 
_cell.entry_id            3EPA 
_cell.length_a            91.597 
_cell.length_b            54.489 
_cell.length_c            74.577 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3EPA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            D 
_struct_conn.ptnr1_label_atom_id            C 
_struct_conn.ptnr1_label_comp_id            PYR 
_struct_conn.ptnr1_label_seq_id             . 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             PYR 
_struct_conn.ptnr1_auth_seq_id              68 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            N 
_struct_conn.ptnr2_label_comp_id            SER 
_struct_conn.ptnr2_label_seq_id             1 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             SER 
_struct_conn.ptnr2_auth_seq_id              69 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.529 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C4 H12 N2' 
_chem_comp.formula_weight    88.151 
_chem_comp.id                PUT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,4-DIAMINOBUTANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     PUTRESCINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N2 C4 PUT sing 277 n n 
N2 HN21 PUT sing 278 n n 
N2 HN22 PUT sing 279 n n 
C4 C3 PUT sing 280 n n 
C4 H41 PUT sing 281 n n 
C4 H42 PUT sing 282 n n 
C3 C2 PUT sing 283 n n 
C3 H31 PUT sing 284 n n 
C3 H32 PUT sing 285 n n 
C2 C1 PUT sing 286 n n 
C2 H21 PUT sing 287 n n 
C2 H22 PUT sing 288 n n 
C1 N1 PUT sing 289 n n 
C1 H11 PUT sing 290 n n 
C1 H12 PUT sing 291 n n 
N1 HN11 PUT sing 292 n n 
N1 HN12 PUT sing 293 n n 
#
_atom_sites.entry_id                     3EPA 
_atom_sites.fract_transf_matrix[1][1]    0.010917 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003855 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018352 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01422 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 TRS B 1 368 368 TRS TRS . 
D 4 PYR A 1 68 68 PYR PYR . 
E 5 PUT A 1 350 350 PUT PUT . 
F 6 HOH B 1 369 7 HOH HOH . 
F 6 HOH B 2 370 9 HOH HOH . 
F 6 HOH B 3 371 15 HOH HOH . 
F 6 HOH B 4 372 26 HOH HOH . 
F 6 HOH B 5 373 34 HOH HOH . 
F 6 HOH B 6 374 36 HOH HOH . 
F 6 HOH B 7 375 37 HOH HOH . 
F 6 HOH B 8 376 42 HOH HOH . 
F 6 HOH B 9 377 44 HOH HOH . 
F 6 HOH B 10 378 50 HOH HOH . 
F 6 HOH B 11 379 51 HOH HOH . 
F 6 HOH B 12 380 57 HOH HOH . 
F 6 HOH B 13 381 69 HOH HOH . 
F 6 HOH B 14 382 73 HOH HOH . 
F 6 HOH B 15 383 74 HOH HOH . 
F 6 HOH B 16 384 77 HOH HOH . 
F 6 HOH B 17 385 80 HOH HOH . 
F 6 HOH B 18 386 87 HOH HOH . 
F 6 HOH B 19 387 98 HOH HOH . 
F 6 HOH B 20 388 99 HOH HOH . 
F 6 HOH B 21 389 105 HOH HOH . 
F 6 HOH B 22 390 108 HOH HOH . 
F 6 HOH B 23 391 132 HOH HOH . 
F 6 HOH B 24 392 137 HOH HOH . 
F 6 HOH B 25 393 140 HOH HOH . 
G 6 HOH A 1 351 1 HOH HOH . 
G 6 HOH A 2 352 2 HOH HOH . 
G 6 HOH A 3 353 3 HOH HOH . 
G 6 HOH A 4 354 4 HOH HOH . 
G 6 HOH A 5 355 5 HOH HOH . 
G 6 HOH A 6 356 6 HOH HOH . 
G 6 HOH A 7 357 8 HOH HOH . 
G 6 HOH A 8 358 10 HOH HOH . 
G 6 HOH A 9 359 11 HOH HOH . 
G 6 HOH A 10 360 12 HOH HOH . 
G 6 HOH A 11 361 13 HOH HOH . 
G 6 HOH A 12 362 14 HOH HOH . 
G 6 HOH A 13 363 16 HOH HOH . 
G 6 HOH A 14 364 17 HOH HOH . 
G 6 HOH A 15 365 19 HOH HOH . 
G 6 HOH A 16 366 20 HOH HOH . 
G 6 HOH A 17 367 21 HOH HOH . 
G 6 HOH A 18 368 22 HOH HOH . 
G 6 HOH A 19 369 23 HOH HOH . 
G 6 HOH A 20 370 24 HOH HOH . 
G 6 HOH A 21 371 25 HOH HOH . 
G 6 HOH A 22 372 27 HOH HOH . 
G 6 HOH A 23 373 28 HOH HOH . 
G 6 HOH A 24 374 29 HOH HOH . 
G 6 HOH A 25 375 30 HOH HOH . 
G 6 HOH A 26 376 31 HOH HOH . 
G 6 HOH A 27 377 32 HOH HOH . 
G 6 HOH A 28 378 35 HOH HOH . 
G 6 HOH A 29 379 38 HOH HOH . 
G 6 HOH A 30 380 39 HOH HOH . 
G 6 HOH A 31 381 40 HOH HOH . 
G 6 HOH A 32 382 41 HOH HOH . 
G 6 HOH A 33 383 43 HOH HOH . 
G 6 HOH A 34 384 45 HOH HOH . 
G 6 HOH A 35 385 46 HOH HOH . 
G 6 HOH A 36 386 47 HOH HOH . 
G 6 HOH A 37 387 48 HOH HOH . 
G 6 HOH A 38 388 49 HOH HOH . 
G 6 HOH A 39 389 52 HOH HOH . 
G 6 HOH A 40 390 53 HOH HOH . 
G 6 HOH A 41 391 54 HOH HOH . 
G 6 HOH A 42 392 55 HOH HOH . 
G 6 HOH A 43 393 56 HOH HOH . 
G 6 HOH A 44 394 58 HOH HOH . 
G 6 HOH A 45 395 59 HOH HOH . 
G 6 HOH A 46 396 60 HOH HOH . 
G 6 HOH A 47 397 61 HOH HOH . 
G 6 HOH A 48 398 62 HOH HOH . 
G 6 HOH A 49 399 63 HOH HOH . 
G 6 HOH A 50 400 64 HOH HOH . 
G 6 HOH A 51 401 65 HOH HOH . 
G 6 HOH A 52 402 66 HOH HOH . 
G 6 HOH A 53 403 67 HOH HOH . 
G 6 HOH A 54 404 68 HOH HOH . 
G 6 HOH A 55 405 70 HOH HOH . 
G 6 HOH A 56 406 71 HOH HOH . 
G 6 HOH A 57 407 72 HOH HOH . 
G 6 HOH A 58 408 75 HOH HOH . 
G 6 HOH A 59 409 76 HOH HOH . 
G 6 HOH A 60 410 78 HOH HOH . 
G 6 HOH A 61 411 79 HOH HOH . 
G 6 HOH A 62 412 81 HOH HOH . 
G 6 HOH A 63 413 82 HOH HOH . 
G 6 HOH A 64 414 83 HOH HOH . 
G 6 HOH A 65 415 84 HOH HOH . 
G 6 HOH A 66 416 85 HOH HOH . 
G 6 HOH A 67 417 86 HOH HOH . 
G 6 HOH A 68 418 88 HOH HOH . 
G 6 HOH A 69 419 90 HOH HOH . 
G 6 HOH A 70 420 91 HOH HOH . 
G 6 HOH A 71 421 92 HOH HOH . 
G 6 HOH A 72 422 93 HOH HOH . 
G 6 HOH A 73 423 94 HOH HOH . 
G 6 HOH A 74 424 95 HOH HOH . 
G 6 HOH A 75 425 96 HOH HOH . 
G 6 HOH A 76 426 97 HOH HOH . 
G 6 HOH A 77 427 100 HOH HOH . 
G 6 HOH A 78 428 101 HOH HOH . 
G 6 HOH A 79 429 102 HOH HOH . 
G 6 HOH A 80 430 103 HOH HOH . 
G 6 HOH A 81 431 104 HOH HOH . 
G 6 HOH A 82 432 106 HOH HOH . 
G 6 HOH A 83 433 107 HOH HOH . 
G 6 HOH A 84 434 109 HOH HOH . 
G 6 HOH A 85 435 110 HOH HOH . 
G 6 HOH A 86 436 111 HOH HOH . 
G 6 HOH A 87 437 112 HOH HOH . 
G 6 HOH A 88 438 113 HOH HOH . 
G 6 HOH A 89 439 114 HOH HOH . 
G 6 HOH A 90 440 115 HOH HOH . 
G 6 HOH A 91 441 116 HOH HOH . 
G 6 HOH A 92 442 117 HOH HOH . 
G 6 HOH A 93 443 118 HOH HOH . 
G 6 HOH A 94 444 119 HOH HOH . 
G 6 HOH A 95 445 120 HOH HOH . 
G 6 HOH A 96 446 121 HOH HOH . 
G 6 HOH A 97 447 122 HOH HOH . 
G 6 HOH A 98 448 123 HOH HOH . 
G 6 HOH A 99 449 124 HOH HOH . 
G 6 HOH A 100 450 125 HOH HOH . 
G 6 HOH A 101 451 127 HOH HOH . 
G 6 HOH A 102 452 128 HOH HOH . 
G 6 HOH A 103 453 129 HOH HOH . 
G 6 HOH A 104 454 130 HOH HOH . 
G 6 HOH A 105 455 131 HOH HOH . 
G 6 HOH A 106 456 133 HOH HOH . 
G 6 HOH A 107 457 134 HOH HOH . 
G 6 HOH A 108 458 135 HOH HOH . 
G 6 HOH A 109 459 136 HOH HOH . 
G 6 HOH A 110 460 138 HOH HOH . 
G 6 HOH A 111 461 139 HOH HOH . 
G 6 HOH A 112 462 141 HOH HOH . 
G 6 HOH A 113 463 142 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N2 PUT . . . E 5 9.407 -13.346 59.435 1 39.49 ? N2 PUT 350 A 1 
HETATM 2 C C4 PUT . . . E 5 8.132 -13.185 59.817 1 36.23 ? C4 PUT 350 A 1 
HETATM 3 C C3 PUT . . . E 5 7.94 -14.199 60.822 1 39.64 ? C3 PUT 350 A 1 
HETATM 4 C C2 PUT . . . E 5 7.968 -15.62 60.396 1 37.85 ? C2 PUT 350 A 1 
HETATM 5 C C1 PUT . . . E 5 7.217 -16.576 61.215 1 42.98 ? C1 PUT 350 A 1 
HETATM 6 N N1 PUT . . . E 5 6.213 -17.409 60.58 1 42.15 ? N1 PUT 350 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           332 
_model_server_stats.encode_time_ms          19 
_model_server_stats.element_count           6 
#