data_3EPB # _model_server_result.job_id eInlGAcHetpXeCxnoRBbBw _model_server_result.datetime_utc '2024-11-23 04:00:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3epb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":350}' # _entry.id 3EPB # _exptl.entry_id 3EPB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 88.151 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,4-DIAMINOBUTANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.09 _cell.angle_gamma 90 _cell.entry_id 3EPB _cell.length_a 92.351 _cell.length_b 53.54 _cell.length_c 74.709 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EPB _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id D _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id PYR _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id PYR _struct_conn.ptnr1_auth_seq_id 68 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id SER _struct_conn.ptnr2_label_seq_id 1 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id SER _struct_conn.ptnr2_auth_seq_id 69 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.53 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C4 H12 N2' _chem_comp.formula_weight 88.151 _chem_comp.id PUT _chem_comp.mon_nstd_flag . _chem_comp.name 1,4-DIAMINOBUTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PUTRESCINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C4 PUT sing 277 n n N2 HN21 PUT sing 278 n n N2 HN22 PUT sing 279 n n C4 C3 PUT sing 280 n n C4 H41 PUT sing 281 n n C4 H42 PUT sing 282 n n C3 C2 PUT sing 283 n n C3 H31 PUT sing 284 n n C3 H32 PUT sing 285 n n C2 C1 PUT sing 286 n n C2 H21 PUT sing 287 n n C2 H22 PUT sing 288 n n C1 N1 PUT sing 289 n n C1 H11 PUT sing 290 n n C1 H12 PUT sing 291 n n N1 HN11 PUT sing 292 n n N1 HN12 PUT sing 293 n n # _atom_sites.entry_id 3EPB _atom_sites.fract_transf_matrix[1][1] 0.010828 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003748 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018678 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014164 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PUT B 1 350 350 PUT PUT . D 4 PYR A 1 68 68 PYR PYR . E 5 HOH B 1 351 7 HOH HOH . E 5 HOH B 2 352 11 HOH HOH . E 5 HOH B 3 353 13 HOH HOH . E 5 HOH B 4 354 23 HOH HOH . E 5 HOH B 5 355 35 HOH HOH . E 5 HOH B 6 356 37 HOH HOH . E 5 HOH B 7 357 53 HOH HOH . E 5 HOH B 8 358 66 HOH HOH . E 5 HOH B 9 359 71 HOH HOH . E 5 HOH B 10 360 80 HOH HOH . E 5 HOH B 11 361 86 HOH HOH . E 5 HOH B 12 362 87 HOH HOH . E 5 HOH B 13 363 96 HOH HOH . E 5 HOH B 14 364 107 HOH HOH . E 5 HOH B 15 365 108 HOH HOH . E 5 HOH B 16 366 112 HOH HOH . E 5 HOH B 17 367 119 HOH HOH . E 5 HOH B 18 368 121 HOH HOH . E 5 HOH B 19 369 129 HOH HOH . E 5 HOH B 20 370 134 HOH HOH . E 5 HOH B 21 371 135 HOH HOH . E 5 HOH B 22 372 137 HOH HOH . E 5 HOH B 23 373 144 HOH HOH . E 5 HOH B 24 374 147 HOH HOH . E 5 HOH B 25 375 150 HOH HOH . E 5 HOH B 26 376 156 HOH HOH . E 5 HOH B 27 377 164 HOH HOH . E 5 HOH B 28 378 169 HOH HOH . E 5 HOH B 29 379 176 HOH HOH . E 5 HOH B 30 380 187 HOH HOH . E 5 HOH B 31 381 188 HOH HOH . E 5 HOH B 32 382 198 HOH HOH . E 5 HOH B 33 383 201 HOH HOH . E 5 HOH B 34 384 205 HOH HOH . E 5 HOH B 35 385 208 HOH HOH . E 5 HOH B 36 386 213 HOH HOH . E 5 HOH B 37 387 215 HOH HOH . E 5 HOH B 38 388 216 HOH HOH . F 5 HOH A 1 329 1 HOH HOH . F 5 HOH A 2 330 2 HOH HOH . F 5 HOH A 3 331 3 HOH HOH . F 5 HOH A 4 332 4 HOH HOH . F 5 HOH A 5 333 5 HOH HOH . F 5 HOH A 6 334 6 HOH HOH . F 5 HOH A 7 335 8 HOH HOH . F 5 HOH A 8 336 10 HOH HOH . F 5 HOH A 9 337 12 HOH HOH . F 5 HOH A 10 338 14 HOH HOH . F 5 HOH A 11 339 15 HOH HOH . F 5 HOH A 12 340 16 HOH HOH . F 5 HOH A 13 341 17 HOH HOH . F 5 HOH A 14 342 18 HOH HOH . F 5 HOH A 15 343 19 HOH HOH . F 5 HOH A 16 344 20 HOH HOH . F 5 HOH A 17 345 22 HOH HOH . F 5 HOH A 18 346 24 HOH HOH . F 5 HOH A 19 347 26 HOH HOH . F 5 HOH A 20 348 27 HOH HOH . F 5 HOH A 21 349 28 HOH HOH . F 5 HOH A 22 350 29 HOH HOH . F 5 HOH A 23 351 30 HOH HOH . F 5 HOH A 24 352 31 HOH HOH . F 5 HOH A 25 353 32 HOH HOH . F 5 HOH A 26 354 33 HOH HOH . F 5 HOH A 27 355 34 HOH HOH . F 5 HOH A 28 356 36 HOH HOH . F 5 HOH A 29 357 38 HOH HOH . F 5 HOH A 30 358 39 HOH HOH . F 5 HOH A 31 359 40 HOH HOH . F 5 HOH A 32 360 41 HOH HOH . F 5 HOH A 33 361 42 HOH HOH . F 5 HOH A 34 362 43 HOH HOH . F 5 HOH A 35 363 44 HOH HOH . F 5 HOH A 36 364 45 HOH HOH . F 5 HOH A 37 365 46 HOH HOH . F 5 HOH A 38 366 47 HOH HOH . F 5 HOH A 39 367 48 HOH HOH . F 5 HOH A 40 368 50 HOH HOH . F 5 HOH A 41 369 51 HOH HOH . F 5 HOH A 42 370 52 HOH HOH . F 5 HOH A 43 371 54 HOH HOH . F 5 HOH A 44 372 55 HOH HOH . F 5 HOH A 45 373 57 HOH HOH . F 5 HOH A 46 374 58 HOH HOH . F 5 HOH A 47 375 59 HOH HOH . F 5 HOH A 48 376 61 HOH HOH . F 5 HOH A 49 377 62 HOH HOH . F 5 HOH A 50 378 64 HOH HOH . F 5 HOH A 51 379 65 HOH HOH . F 5 HOH A 52 380 67 HOH HOH . F 5 HOH A 53 381 68 HOH HOH . F 5 HOH A 54 382 69 HOH HOH . F 5 HOH A 55 383 70 HOH HOH . F 5 HOH A 56 384 72 HOH HOH . F 5 HOH A 57 385 73 HOH HOH . F 5 HOH A 58 386 74 HOH HOH . F 5 HOH A 59 387 75 HOH HOH . F 5 HOH A 60 388 76 HOH HOH . F 5 HOH A 61 389 77 HOH HOH . F 5 HOH A 62 390 78 HOH HOH . F 5 HOH A 63 391 79 HOH HOH . F 5 HOH A 64 392 81 HOH HOH . F 5 HOH A 65 393 82 HOH HOH . F 5 HOH A 66 394 83 HOH HOH . F 5 HOH A 67 395 84 HOH HOH . F 5 HOH A 68 396 85 HOH HOH . F 5 HOH A 69 397 88 HOH HOH . F 5 HOH A 70 398 90 HOH HOH . F 5 HOH A 71 399 91 HOH HOH . F 5 HOH A 72 400 93 HOH HOH . F 5 HOH A 73 401 94 HOH HOH . F 5 HOH A 74 402 97 HOH HOH . F 5 HOH A 75 403 98 HOH HOH . F 5 HOH A 76 404 99 HOH HOH . F 5 HOH A 77 405 100 HOH HOH . F 5 HOH A 78 406 101 HOH HOH . F 5 HOH A 79 407 102 HOH HOH . F 5 HOH A 80 408 103 HOH HOH . F 5 HOH A 81 409 104 HOH HOH . F 5 HOH A 82 410 105 HOH HOH . F 5 HOH A 83 411 106 HOH HOH . F 5 HOH A 84 412 109 HOH HOH . F 5 HOH A 85 413 110 HOH HOH . F 5 HOH A 86 414 111 HOH HOH . F 5 HOH A 87 415 113 HOH HOH . F 5 HOH A 88 416 114 HOH HOH . F 5 HOH A 89 417 115 HOH HOH . F 5 HOH A 90 418 116 HOH HOH . F 5 HOH A 91 419 117 HOH HOH . F 5 HOH A 92 420 118 HOH HOH . F 5 HOH A 93 421 122 HOH HOH . F 5 HOH A 94 422 123 HOH HOH . F 5 HOH A 95 423 125 HOH HOH . F 5 HOH A 96 424 126 HOH HOH . F 5 HOH A 97 425 127 HOH HOH . F 5 HOH A 98 426 128 HOH HOH . F 5 HOH A 99 427 130 HOH HOH . F 5 HOH A 100 428 131 HOH HOH . F 5 HOH A 101 429 132 HOH HOH . F 5 HOH A 102 430 133 HOH HOH . F 5 HOH A 103 431 136 HOH HOH . F 5 HOH A 104 432 138 HOH HOH . F 5 HOH A 105 433 139 HOH HOH . F 5 HOH A 106 434 140 HOH HOH . F 5 HOH A 107 435 141 HOH HOH . F 5 HOH A 108 436 142 HOH HOH . F 5 HOH A 109 437 143 HOH HOH . F 5 HOH A 110 438 145 HOH HOH . F 5 HOH A 111 439 146 HOH HOH . F 5 HOH A 112 440 149 HOH HOH . F 5 HOH A 113 441 151 HOH HOH . F 5 HOH A 114 442 152 HOH HOH . F 5 HOH A 115 443 154 HOH HOH . F 5 HOH A 116 444 155 HOH HOH . F 5 HOH A 117 445 158 HOH HOH . F 5 HOH A 118 446 159 HOH HOH . F 5 HOH A 119 447 160 HOH HOH . F 5 HOH A 120 448 161 HOH HOH . F 5 HOH A 121 449 162 HOH HOH . F 5 HOH A 122 450 163 HOH HOH . F 5 HOH A 123 451 165 HOH HOH . F 5 HOH A 124 452 166 HOH HOH . F 5 HOH A 125 453 167 HOH HOH . F 5 HOH A 126 454 168 HOH HOH . F 5 HOH A 127 455 170 HOH HOH . F 5 HOH A 128 456 171 HOH HOH . F 5 HOH A 129 457 172 HOH HOH . F 5 HOH A 130 458 173 HOH HOH . F 5 HOH A 131 459 174 HOH HOH . F 5 HOH A 132 460 175 HOH HOH . F 5 HOH A 133 461 177 HOH HOH . F 5 HOH A 134 462 178 HOH HOH . F 5 HOH A 135 463 179 HOH HOH . F 5 HOH A 136 464 180 HOH HOH . F 5 HOH A 137 465 181 HOH HOH . F 5 HOH A 138 466 183 HOH HOH . F 5 HOH A 139 467 184 HOH HOH . F 5 HOH A 140 468 185 HOH HOH . F 5 HOH A 141 469 186 HOH HOH . F 5 HOH A 142 470 190 HOH HOH . F 5 HOH A 143 471 191 HOH HOH . F 5 HOH A 144 472 192 HOH HOH . F 5 HOH A 145 473 193 HOH HOH . F 5 HOH A 146 474 194 HOH HOH . F 5 HOH A 147 475 196 HOH HOH . F 5 HOH A 148 476 200 HOH HOH . F 5 HOH A 149 477 204 HOH HOH . F 5 HOH A 150 478 207 HOH HOH . F 5 HOH A 151 479 210 HOH HOH . F 5 HOH A 152 480 211 HOH HOH . F 5 HOH A 153 481 212 HOH HOH . F 5 HOH A 154 482 217 HOH HOH . F 5 HOH A 155 483 218 HOH HOH . F 5 HOH A 156 484 220 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N2 PUT . . . C 3 22.101 -16.715 24.298 1 25.19 ? N2 PUT 350 B 1 HETATM 2 C C4 PUT . . . C 3 21.204 -17.091 25.235 1 26.23 ? C4 PUT 350 B 1 HETATM 3 C C3 PUT . . . C 3 21.206 -18.293 25.92 1 29.26 ? C3 PUT 350 B 1 HETATM 4 C C2 PUT . . . C 3 20.593 -19.243 25.477 1 28.52 ? C2 PUT 350 B 1 HETATM 5 C C1 PUT . . . C 3 20.067 -20.27 26.554 1 29.13 ? C1 PUT 350 B 1 HETATM 6 N N1 PUT . . . C 3 19.311 -21.206 25.844 1 28.56 ? N1 PUT 350 B 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 374 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #