data_3EPB
#
_model_server_result.job_id            g2Ca2GJdvuGQyh57BIPsWw 
_model_server_result.datetime_utc      '2024-11-13 08:13:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3epb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":68}' 
#
_entry.id    3EPB 
#
_exptl.entry_id    3EPB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              88.062 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PYRUVIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.09 
_cell.angle_gamma         90 
_cell.entry_id            3EPB 
_cell.length_a            92.351 
_cell.length_b            53.54 
_cell.length_c            74.709 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3EPB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            D 
_struct_conn.ptnr1_label_atom_id            C 
_struct_conn.ptnr1_label_comp_id            PYR 
_struct_conn.ptnr1_label_seq_id             . 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             PYR 
_struct_conn.ptnr1_auth_seq_id              68 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            N 
_struct_conn.ptnr2_label_comp_id            SER 
_struct_conn.ptnr2_label_seq_id             1 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             SER 
_struct_conn.ptnr2_auth_seq_id              69 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.53 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C3 H4 O3' 
_chem_comp.formula_weight    88.062 
_chem_comp.id                PYR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PYRUVIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O PYR doub 294 n n 
C OXT PYR sing 295 n n 
C CA PYR sing 296 n n 
OXT HXT PYR sing 297 n n 
CA O3 PYR doub 298 n n 
CA CB PYR sing 299 n n 
CB HB1 PYR sing 300 n n 
CB HB2 PYR sing 301 n n 
CB HB3 PYR sing 302 n n 
#
_atom_sites.entry_id                     3EPB 
_atom_sites.fract_transf_matrix[1][1]    0.010828 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003748 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018678 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014164 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 PUT B 1 350 350 PUT PUT . 
D 4 PYR A 1 68 68 PYR PYR . 
E 5 HOH B 1 351 7 HOH HOH . 
E 5 HOH B 2 352 11 HOH HOH . 
E 5 HOH B 3 353 13 HOH HOH . 
E 5 HOH B 4 354 23 HOH HOH . 
E 5 HOH B 5 355 35 HOH HOH . 
E 5 HOH B 6 356 37 HOH HOH . 
E 5 HOH B 7 357 53 HOH HOH . 
E 5 HOH B 8 358 66 HOH HOH . 
E 5 HOH B 9 359 71 HOH HOH . 
E 5 HOH B 10 360 80 HOH HOH . 
E 5 HOH B 11 361 86 HOH HOH . 
E 5 HOH B 12 362 87 HOH HOH . 
E 5 HOH B 13 363 96 HOH HOH . 
E 5 HOH B 14 364 107 HOH HOH . 
E 5 HOH B 15 365 108 HOH HOH . 
E 5 HOH B 16 366 112 HOH HOH . 
E 5 HOH B 17 367 119 HOH HOH . 
E 5 HOH B 18 368 121 HOH HOH . 
E 5 HOH B 19 369 129 HOH HOH . 
E 5 HOH B 20 370 134 HOH HOH . 
E 5 HOH B 21 371 135 HOH HOH . 
E 5 HOH B 22 372 137 HOH HOH . 
E 5 HOH B 23 373 144 HOH HOH . 
E 5 HOH B 24 374 147 HOH HOH . 
E 5 HOH B 25 375 150 HOH HOH . 
E 5 HOH B 26 376 156 HOH HOH . 
E 5 HOH B 27 377 164 HOH HOH . 
E 5 HOH B 28 378 169 HOH HOH . 
E 5 HOH B 29 379 176 HOH HOH . 
E 5 HOH B 30 380 187 HOH HOH . 
E 5 HOH B 31 381 188 HOH HOH . 
E 5 HOH B 32 382 198 HOH HOH . 
E 5 HOH B 33 383 201 HOH HOH . 
E 5 HOH B 34 384 205 HOH HOH . 
E 5 HOH B 35 385 208 HOH HOH . 
E 5 HOH B 36 386 213 HOH HOH . 
E 5 HOH B 37 387 215 HOH HOH . 
E 5 HOH B 38 388 216 HOH HOH . 
F 5 HOH A 1 329 1 HOH HOH . 
F 5 HOH A 2 330 2 HOH HOH . 
F 5 HOH A 3 331 3 HOH HOH . 
F 5 HOH A 4 332 4 HOH HOH . 
F 5 HOH A 5 333 5 HOH HOH . 
F 5 HOH A 6 334 6 HOH HOH . 
F 5 HOH A 7 335 8 HOH HOH . 
F 5 HOH A 8 336 10 HOH HOH . 
F 5 HOH A 9 337 12 HOH HOH . 
F 5 HOH A 10 338 14 HOH HOH . 
F 5 HOH A 11 339 15 HOH HOH . 
F 5 HOH A 12 340 16 HOH HOH . 
F 5 HOH A 13 341 17 HOH HOH . 
F 5 HOH A 14 342 18 HOH HOH . 
F 5 HOH A 15 343 19 HOH HOH . 
F 5 HOH A 16 344 20 HOH HOH . 
F 5 HOH A 17 345 22 HOH HOH . 
F 5 HOH A 18 346 24 HOH HOH . 
F 5 HOH A 19 347 26 HOH HOH . 
F 5 HOH A 20 348 27 HOH HOH . 
F 5 HOH A 21 349 28 HOH HOH . 
F 5 HOH A 22 350 29 HOH HOH . 
F 5 HOH A 23 351 30 HOH HOH . 
F 5 HOH A 24 352 31 HOH HOH . 
F 5 HOH A 25 353 32 HOH HOH . 
F 5 HOH A 26 354 33 HOH HOH . 
F 5 HOH A 27 355 34 HOH HOH . 
F 5 HOH A 28 356 36 HOH HOH . 
F 5 HOH A 29 357 38 HOH HOH . 
F 5 HOH A 30 358 39 HOH HOH . 
F 5 HOH A 31 359 40 HOH HOH . 
F 5 HOH A 32 360 41 HOH HOH . 
F 5 HOH A 33 361 42 HOH HOH . 
F 5 HOH A 34 362 43 HOH HOH . 
F 5 HOH A 35 363 44 HOH HOH . 
F 5 HOH A 36 364 45 HOH HOH . 
F 5 HOH A 37 365 46 HOH HOH . 
F 5 HOH A 38 366 47 HOH HOH . 
F 5 HOH A 39 367 48 HOH HOH . 
F 5 HOH A 40 368 50 HOH HOH . 
F 5 HOH A 41 369 51 HOH HOH . 
F 5 HOH A 42 370 52 HOH HOH . 
F 5 HOH A 43 371 54 HOH HOH . 
F 5 HOH A 44 372 55 HOH HOH . 
F 5 HOH A 45 373 57 HOH HOH . 
F 5 HOH A 46 374 58 HOH HOH . 
F 5 HOH A 47 375 59 HOH HOH . 
F 5 HOH A 48 376 61 HOH HOH . 
F 5 HOH A 49 377 62 HOH HOH . 
F 5 HOH A 50 378 64 HOH HOH . 
F 5 HOH A 51 379 65 HOH HOH . 
F 5 HOH A 52 380 67 HOH HOH . 
F 5 HOH A 53 381 68 HOH HOH . 
F 5 HOH A 54 382 69 HOH HOH . 
F 5 HOH A 55 383 70 HOH HOH . 
F 5 HOH A 56 384 72 HOH HOH . 
F 5 HOH A 57 385 73 HOH HOH . 
F 5 HOH A 58 386 74 HOH HOH . 
F 5 HOH A 59 387 75 HOH HOH . 
F 5 HOH A 60 388 76 HOH HOH . 
F 5 HOH A 61 389 77 HOH HOH . 
F 5 HOH A 62 390 78 HOH HOH . 
F 5 HOH A 63 391 79 HOH HOH . 
F 5 HOH A 64 392 81 HOH HOH . 
F 5 HOH A 65 393 82 HOH HOH . 
F 5 HOH A 66 394 83 HOH HOH . 
F 5 HOH A 67 395 84 HOH HOH . 
F 5 HOH A 68 396 85 HOH HOH . 
F 5 HOH A 69 397 88 HOH HOH . 
F 5 HOH A 70 398 90 HOH HOH . 
F 5 HOH A 71 399 91 HOH HOH . 
F 5 HOH A 72 400 93 HOH HOH . 
F 5 HOH A 73 401 94 HOH HOH . 
F 5 HOH A 74 402 97 HOH HOH . 
F 5 HOH A 75 403 98 HOH HOH . 
F 5 HOH A 76 404 99 HOH HOH . 
F 5 HOH A 77 405 100 HOH HOH . 
F 5 HOH A 78 406 101 HOH HOH . 
F 5 HOH A 79 407 102 HOH HOH . 
F 5 HOH A 80 408 103 HOH HOH . 
F 5 HOH A 81 409 104 HOH HOH . 
F 5 HOH A 82 410 105 HOH HOH . 
F 5 HOH A 83 411 106 HOH HOH . 
F 5 HOH A 84 412 109 HOH HOH . 
F 5 HOH A 85 413 110 HOH HOH . 
F 5 HOH A 86 414 111 HOH HOH . 
F 5 HOH A 87 415 113 HOH HOH . 
F 5 HOH A 88 416 114 HOH HOH . 
F 5 HOH A 89 417 115 HOH HOH . 
F 5 HOH A 90 418 116 HOH HOH . 
F 5 HOH A 91 419 117 HOH HOH . 
F 5 HOH A 92 420 118 HOH HOH . 
F 5 HOH A 93 421 122 HOH HOH . 
F 5 HOH A 94 422 123 HOH HOH . 
F 5 HOH A 95 423 125 HOH HOH . 
F 5 HOH A 96 424 126 HOH HOH . 
F 5 HOH A 97 425 127 HOH HOH . 
F 5 HOH A 98 426 128 HOH HOH . 
F 5 HOH A 99 427 130 HOH HOH . 
F 5 HOH A 100 428 131 HOH HOH . 
F 5 HOH A 101 429 132 HOH HOH . 
F 5 HOH A 102 430 133 HOH HOH . 
F 5 HOH A 103 431 136 HOH HOH . 
F 5 HOH A 104 432 138 HOH HOH . 
F 5 HOH A 105 433 139 HOH HOH . 
F 5 HOH A 106 434 140 HOH HOH . 
F 5 HOH A 107 435 141 HOH HOH . 
F 5 HOH A 108 436 142 HOH HOH . 
F 5 HOH A 109 437 143 HOH HOH . 
F 5 HOH A 110 438 145 HOH HOH . 
F 5 HOH A 111 439 146 HOH HOH . 
F 5 HOH A 112 440 149 HOH HOH . 
F 5 HOH A 113 441 151 HOH HOH . 
F 5 HOH A 114 442 152 HOH HOH . 
F 5 HOH A 115 443 154 HOH HOH . 
F 5 HOH A 116 444 155 HOH HOH . 
F 5 HOH A 117 445 158 HOH HOH . 
F 5 HOH A 118 446 159 HOH HOH . 
F 5 HOH A 119 447 160 HOH HOH . 
F 5 HOH A 120 448 161 HOH HOH . 
F 5 HOH A 121 449 162 HOH HOH . 
F 5 HOH A 122 450 163 HOH HOH . 
F 5 HOH A 123 451 165 HOH HOH . 
F 5 HOH A 124 452 166 HOH HOH . 
F 5 HOH A 125 453 167 HOH HOH . 
F 5 HOH A 126 454 168 HOH HOH . 
F 5 HOH A 127 455 170 HOH HOH . 
F 5 HOH A 128 456 171 HOH HOH . 
F 5 HOH A 129 457 172 HOH HOH . 
F 5 HOH A 130 458 173 HOH HOH . 
F 5 HOH A 131 459 174 HOH HOH . 
F 5 HOH A 132 460 175 HOH HOH . 
F 5 HOH A 133 461 177 HOH HOH . 
F 5 HOH A 134 462 178 HOH HOH . 
F 5 HOH A 135 463 179 HOH HOH . 
F 5 HOH A 136 464 180 HOH HOH . 
F 5 HOH A 137 465 181 HOH HOH . 
F 5 HOH A 138 466 183 HOH HOH . 
F 5 HOH A 139 467 184 HOH HOH . 
F 5 HOH A 140 468 185 HOH HOH . 
F 5 HOH A 141 469 186 HOH HOH . 
F 5 HOH A 142 470 190 HOH HOH . 
F 5 HOH A 143 471 191 HOH HOH . 
F 5 HOH A 144 472 192 HOH HOH . 
F 5 HOH A 145 473 193 HOH HOH . 
F 5 HOH A 146 474 194 HOH HOH . 
F 5 HOH A 147 475 196 HOH HOH . 
F 5 HOH A 148 476 200 HOH HOH . 
F 5 HOH A 149 477 204 HOH HOH . 
F 5 HOH A 150 478 207 HOH HOH . 
F 5 HOH A 151 479 210 HOH HOH . 
F 5 HOH A 152 480 211 HOH HOH . 
F 5 HOH A 153 481 212 HOH HOH . 
F 5 HOH A 154 482 217 HOH HOH . 
F 5 HOH A 155 483 218 HOH HOH . 
F 5 HOH A 156 484 220 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C PYR . . . D 4 20.084 -10.628 11.902 1 37.68 ? C PYR 68 A 1 
HETATM 2 O O PYR . . . D 4 19.489 -10.648 10.841 1 36.07 ? O PYR 68 A 1 
HETATM 3 C CA PYR . . . D 4 21.304 -9.876 12.01 1 40.63 ? CA PYR 68 A 1 
HETATM 4 O O3 PYR . . . D 4 21.664 -9.279 11.006 1 44.03 ? O3 PYR 68 A 1 
HETATM 5 C CB PYR . . . D 4 22.249 -9.685 13.149 1 40.92 ? CB PYR 68 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           219 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           5 
#