data_3EPG # _model_server_result.job_id ZR-H9FRHz2oanhbjMUYJyw _model_server_result.datetime_utc '2024-11-16 01:25:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3epg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":421}' # _entry.id 3EPG # _exptl.entry_id 3EPG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3EPG _cell.length_a 98.535 _cell.length_b 98.535 _cell.length_c 202.354 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EPG _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_445 -y-1,-x-1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -49.2675 -85.333813 33.725667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' DC 17 B DC 12 1_555 B P DOC 18 B DOC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.502 ? covale ? covale2 C O3' 2EG 4 C 2EG 840 1_555 C P DG 5 C DG 841 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.532 ? metalc ? metalc1 A O LYS 237 A LYS 237 1_555 E NA NA . A NA 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc2 A O ILE 239 A ILE 239 1_555 E NA NA . A NA 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc3 A O ILE 242 A ILE 242 1_555 E NA NA . A NA 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? metalc ? metalc4 E NA NA . A NA 421 1_555 B OP1 DC 17 B DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? hydrog WATSON-CRICK hydrog1 B N1 DA 12 B DA 7 1_555 C N3 DT 11 C DT 847 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N6 DA 12 B DA 7 1_555 C O4 DT 11 C DT 847 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N1 DG 13 B DG 8 1_555 C N3 DC 10 C DC 846 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N2 DG 13 B DG 8 1_555 C O2 DC 10 C DC 846 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B O6 DG 13 B DG 8 1_555 C N4 DC 10 C DC 846 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N1 DG 14 B DG 9 1_555 C N3 DC 9 C DC 845 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N2 DG 14 B DG 9 1_555 C O2 DC 9 C DC 845 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B O6 DG 14 B DG 9 1_555 C N4 DC 9 C DC 845 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N1 DA 15 B DA 10 1_555 C N3 DT 8 C DT 844 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N6 DA 15 B DA 10 1_555 C O4 DT 8 C DT 844 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N3 DC 16 B DC 11 1_555 C N1 DG 7 C DG 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N4 DC 16 B DC 11 1_555 C O6 DG 7 C DG 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B O2 DC 16 B DC 11 1_555 C N2 DG 7 C DG 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N3 DC 17 B DC 12 1_555 C N1 DG 6 C DG 842 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N4 DC 17 B DC 12 1_555 C O6 DG 6 C DG 842 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B O2 DC 17 B DC 12 1_555 C N2 DG 6 C DG 842 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N3 DOC 18 B DOC 13 1_555 C N1 DG 5 C DG 841 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N4 DOC 18 B DOC 13 1_555 C O6 DG 5 C DG 841 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B O2 DOC 18 B DOC 13 1_555 C N2 DG 5 C DG 841 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3EPG _atom_sites.fract_transf_matrix[1][1] 0.010149 _atom_sites.fract_transf_matrix[1][2] 0.005859 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011719 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004942 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 DCP A 1 875 875 DCP DCP . E 4 NA A 1 421 1 NA NA . F 4 NA A 1 422 2 NA NA . G 4 NA A 1 423 1 NA NA . H 4 NA C 1 1 1 NA NA . I 5 HOH A 1 424 1 HOH HOH . I 5 HOH A 2 425 3 HOH HOH . I 5 HOH A 3 426 4 HOH HOH . I 5 HOH A 4 427 5 HOH HOH . I 5 HOH A 5 428 7 HOH HOH . I 5 HOH A 6 429 8 HOH HOH . I 5 HOH A 7 430 9 HOH HOH . I 5 HOH A 8 431 10 HOH HOH . I 5 HOH A 9 432 11 HOH HOH . I 5 HOH A 10 433 13 HOH HOH . I 5 HOH A 11 434 14 HOH HOH . I 5 HOH A 12 435 15 HOH HOH . I 5 HOH A 13 436 17 HOH HOH . I 5 HOH A 14 437 18 HOH HOH . I 5 HOH A 15 438 20 HOH HOH . I 5 HOH A 16 439 21 HOH HOH . I 5 HOH A 17 440 24 HOH HOH . I 5 HOH A 18 441 26 HOH HOH . I 5 HOH A 19 442 27 HOH HOH . I 5 HOH A 20 443 28 HOH HOH . I 5 HOH A 21 444 29 HOH HOH . I 5 HOH A 22 445 31 HOH HOH . I 5 HOH A 23 446 32 HOH HOH . I 5 HOH A 24 447 34 HOH HOH . I 5 HOH A 25 448 35 HOH HOH . I 5 HOH A 26 449 36 HOH HOH . I 5 HOH A 27 450 37 HOH HOH . I 5 HOH A 28 451 39 HOH HOH . I 5 HOH A 29 452 40 HOH HOH . I 5 HOH A 30 453 41 HOH HOH . I 5 HOH A 31 454 42 HOH HOH . I 5 HOH A 32 455 43 HOH HOH . I 5 HOH A 33 456 44 HOH HOH . I 5 HOH A 34 457 45 HOH HOH . I 5 HOH A 35 458 46 HOH HOH . I 5 HOH A 36 459 47 HOH HOH . I 5 HOH A 37 460 48 HOH HOH . I 5 HOH A 38 461 50 HOH HOH . I 5 HOH A 39 462 51 HOH HOH . I 5 HOH A 40 463 52 HOH HOH . I 5 HOH A 41 464 53 HOH HOH . I 5 HOH A 42 465 54 HOH HOH . I 5 HOH A 43 466 55 HOH HOH . I 5 HOH A 44 467 56 HOH HOH . I 5 HOH A 45 468 57 HOH HOH . I 5 HOH A 46 469 58 HOH HOH . I 5 HOH A 47 470 59 HOH HOH . I 5 HOH A 48 471 60 HOH HOH . I 5 HOH A 49 472 61 HOH HOH . I 5 HOH A 50 473 62 HOH HOH . I 5 HOH A 51 474 63 HOH HOH . I 5 HOH A 52 475 64 HOH HOH . I 5 HOH A 53 476 65 HOH HOH . I 5 HOH A 54 477 66 HOH HOH . I 5 HOH A 55 478 67 HOH HOH . I 5 HOH A 56 479 68 HOH HOH . I 5 HOH A 57 480 69 HOH HOH . I 5 HOH A 58 481 70 HOH HOH . I 5 HOH A 59 482 71 HOH HOH . I 5 HOH A 60 483 72 HOH HOH . I 5 HOH A 61 484 73 HOH HOH . I 5 HOH A 62 485 74 HOH HOH . I 5 HOH A 63 486 75 HOH HOH . I 5 HOH A 64 487 76 HOH HOH . I 5 HOH A 65 488 77 HOH HOH . I 5 HOH A 66 489 78 HOH HOH . I 5 HOH A 67 490 79 HOH HOH . J 5 HOH C 1 23 23 HOH HOH . J 5 HOH C 2 49 49 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x -1.327 _atom_site.Cartn_y -30.892 _atom_site.Cartn_z 6.214 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 39.36 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 421 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #