data_3EPI
#
_model_server_result.job_id            Hwij0lgXV8Q0TguAOzXDjA 
_model_server_result.datetime_utc      '2024-11-16 03:26:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3epi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":422}' 
#
_entry.id    3EPI 
#
_exptl.entry_id    3EPI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              94.971 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3EPI 
_cell.length_a            98.643 
_cell.length_b            98.643 
_cell.length_c            202.231 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3EPI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_544 x,x-y-1,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 49.3215 -85.427344 -33.705167 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B O3' DC 17 B DC 12 1_555 B P DOC 18 B DOC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.6 ? 
covale ? covale2 C O3' 2EG 4 C 2EG 840 1_555 C P DG 5 C DG 841 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.51 ? 
metalc ? metalc1 A O LYS 237 A LYS 237 1_555 D NA NA . A NA 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? 
metalc ? metalc2 A O ILE 239 A ILE 239 1_555 D NA NA . A NA 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? 
metalc ? metalc3 A O ILE 242 A ILE 242 1_555 D NA NA . A NA 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? 
metalc ? metalc4 D NA NA . A NA 421 1_555 B OP1 DC 17 B DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
hydrog 'DA-DT PAIR' hydrog1 B N1 DA 12 B DA 7 1_555 C N3 DT 11 C DT 847 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DG-DC PAIR' hydrog2 B N2 DG 13 B DG 8 1_555 C O2 DC 10 C DC 846 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 B N1 DG 14 B DG 9 1_555 C N3 DC 9 C DC 845 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 B N2 DG 14 B DG 9 1_555 C O2 DC 9 C DC 845 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 B O6 DG 14 B DG 9 1_555 C N4 DC 9 C DC 845 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DA-DT PAIR' hydrog6 B N1 DA 15 B DA 10 1_555 C N3 DT 8 C DT 844 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DC-DG PAIR' hydrog7 B O2 DC 16 B DC 11 1_555 C N2 DG 7 C DG 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DC-DG PAIR' hydrog8 B O2 DC 17 B DC 12 1_555 C N2 DG 6 C DG 842 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 B N3 DOC 18 B DOC 13 1_555 C N1 DG 5 C DG 841 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 B N4 DOC 18 B DOC 13 1_555 C O6 DG 5 C DG 841 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 B O2 DOC 18 B DOC 13 1_555 C N2 DG 5 C DG 841 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 488 n n 
P O2 PO4 sing 489 n n 
P O3 PO4 sing 490 n n 
P O4 PO4 sing 491 n n 
#
_atom_sites.entry_id                     3EPI 
_atom_sites.fract_transf_matrix[1][1]    0.010138 
_atom_sites.fract_transf_matrix[1][2]    0.005853 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011706 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004945 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 NA A 1 421 1 NA NA . 
E 4 PO4 A 1 422 1 PO4 PO4 . 
F 5 HOH A 1 423 1 HOH HOH . 
F 5 HOH A 2 424 2 HOH HOH . 
F 5 HOH A 3 425 3 HOH HOH . 
F 5 HOH A 4 426 4 HOH HOH . 
F 5 HOH A 5 427 5 HOH HOH . 
F 5 HOH A 6 428 6 HOH HOH . 
F 5 HOH A 7 429 7 HOH HOH . 
F 5 HOH A 8 430 8 HOH HOH . 
F 5 HOH A 9 431 10 HOH HOH . 
F 5 HOH A 10 432 12 HOH HOH . 
F 5 HOH A 11 433 13 HOH HOH . 
F 5 HOH A 12 434 16 HOH HOH . 
F 5 HOH A 13 435 17 HOH HOH . 
F 5 HOH A 14 436 18 HOH HOH . 
F 5 HOH A 15 437 19 HOH HOH . 
F 5 HOH A 16 438 21 HOH HOH . 
F 5 HOH A 17 439 22 HOH HOH . 
F 5 HOH A 18 440 25 HOH HOH . 
F 5 HOH A 19 441 26 HOH HOH . 
F 5 HOH A 20 442 27 HOH HOH . 
F 5 HOH A 21 443 28 HOH HOH . 
F 5 HOH A 22 444 29 HOH HOH . 
F 5 HOH A 23 445 30 HOH HOH . 
F 5 HOH A 24 446 31 HOH HOH . 
F 5 HOH A 25 447 32 HOH HOH . 
F 5 HOH A 26 448 33 HOH HOH . 
F 5 HOH A 27 449 35 HOH HOH . 
F 5 HOH A 28 450 36 HOH HOH . 
F 5 HOH A 29 451 37 HOH HOH . 
F 5 HOH A 30 452 38 HOH HOH . 
F 5 HOH A 31 453 39 HOH HOH . 
F 5 HOH A 32 454 40 HOH HOH . 
F 5 HOH A 33 455 41 HOH HOH . 
F 5 HOH A 34 456 42 HOH HOH . 
F 5 HOH A 35 457 43 HOH HOH . 
F 5 HOH A 36 458 44 HOH HOH . 
F 5 HOH A 37 459 45 HOH HOH . 
F 5 HOH A 38 460 46 HOH HOH . 
F 5 HOH A 39 461 49 HOH HOH . 
F 5 HOH A 40 462 51 HOH HOH . 
F 5 HOH A 41 463 52 HOH HOH . 
F 5 HOH A 42 464 53 HOH HOH . 
F 5 HOH A 43 465 54 HOH HOH . 
F 5 HOH A 44 466 55 HOH HOH . 
F 5 HOH A 45 467 56 HOH HOH . 
F 5 HOH A 46 468 57 HOH HOH . 
F 5 HOH A 47 469 58 HOH HOH . 
F 5 HOH A 48 470 59 HOH HOH . 
F 5 HOH A 49 471 60 HOH HOH . 
F 5 HOH A 50 472 61 HOH HOH . 
F 5 HOH A 51 473 62 HOH HOH . 
F 5 HOH A 52 474 63 HOH HOH . 
F 5 HOH A 53 475 65 HOH HOH . 
F 5 HOH A 54 476 67 HOH HOH . 
F 5 HOH A 55 477 71 HOH HOH . 
F 5 HOH A 56 478 73 HOH HOH . 
F 5 HOH A 57 479 74 HOH HOH . 
F 5 HOH A 58 480 75 HOH HOH . 
F 5 HOH A 59 481 76 HOH HOH . 
F 5 HOH A 60 482 77 HOH HOH . 
F 5 HOH A 61 483 78 HOH HOH . 
F 5 HOH A 62 484 79 HOH HOH . 
G 5 HOH B 1 34 34 HOH HOH . 
G 5 HOH B 2 69 69 HOH HOH . 
H 5 HOH C 1 15 15 HOH HOH . 
H 5 HOH C 2 20 20 HOH HOH . 
H 5 HOH C 3 24 24 HOH HOH . 
H 5 HOH C 4 47 47 HOH HOH . 
H 5 HOH C 5 66 66 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . E 4 1.615 -17.527 -14.274 1 33.32 ? P PO4 422 A 1 
HETATM 2 O O1 PO4 . . . E 4 2.974 -16.867 -14.349 1 32.74 ? O1 PO4 422 A 1 
HETATM 3 O O2 PO4 . . . E 4 0.868 -17.327 -15.577 1 32.86 ? O2 PO4 422 A 1 
HETATM 4 O O3 PO4 . . . E 4 1.769 -19.01 -13.994 1 33.48 ? O3 PO4 422 A 1 
HETATM 5 O O4 PO4 . . . E 4 0.83 -16.902 -13.14 1 33.92 ? O4 PO4 422 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           5 
#