data_3EPP # _model_server_result.job_id BVzHfV1oOu91hXf8Tdokqg _model_server_result.datetime_utc '2024-10-19 15:33:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3epp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 3EPP # _exptl.entry_id 3EPP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 381.387 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SINEFUNGIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3EPP _cell.length_a 58.515 _cell.length_b 73.65 _cell.length_c 147.518 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EPP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C15 H23 N7 O5' _chem_comp.formula_weight 381.387 _chem_comp.id SFG _chem_comp.mon_nstd_flag . _chem_comp.name SINEFUNGIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ADENOSYL-ORNITHINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SFG sing 290 n n N HN1 SFG sing 291 n n N HN2 SFG sing 292 n n CA C SFG sing 293 n n CA CB SFG sing 294 n n CA HA SFG sing 295 n n C O SFG doub 296 n n C OXT SFG sing 297 n n OXT HXT SFG sing 298 n n CB CG SFG sing 299 n n CB HB1 SFG sing 300 n n CB HB2 SFG sing 301 n n CG CD SFG sing 302 n n CG HG1 SFG sing 303 n n CG HG2 SFG sing 304 n n CD NE SFG sing 305 n n CD C5' SFG sing 306 n n CD HD SFG sing 307 n n NE HNE1 SFG sing 308 n n NE HNE2 SFG sing 309 n n C5' C4' SFG sing 310 n n C5' "H5'1" SFG sing 311 n n C5' "H5'2" SFG sing 312 n n C4' O4' SFG sing 313 n n C4' C3' SFG sing 314 n n C4' H4' SFG sing 315 n n O4' C1' SFG sing 316 n n C3' O3' SFG sing 317 n n C3' C2' SFG sing 318 n n C3' H3' SFG sing 319 n n O3' HO3' SFG sing 320 n n C2' O2' SFG sing 321 n n C2' C1' SFG sing 322 n n C2' H2' SFG sing 323 n n O2' HO2' SFG sing 324 n n C1' N9 SFG sing 325 n n C1' H1' SFG sing 326 n n N9 C8 SFG sing 327 n y N9 C4 SFG sing 328 n y C8 N7 SFG doub 329 n y C8 H8 SFG sing 330 n n N7 C5 SFG sing 331 n y C5 C6 SFG sing 332 n y C5 C4 SFG doub 333 n y C6 N6 SFG sing 334 n n C6 N1 SFG doub 335 n y N6 HN61 SFG sing 336 n n N6 HN62 SFG sing 337 n n N1 C2 SFG sing 338 n y C2 N3 SFG doub 339 n y C2 H2 SFG sing 340 n n N3 C4 SFG sing 341 n y # _atom_sites.entry_id 3EPP _atom_sites.fract_transf_matrix[1][1] 0.01709 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013578 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006779 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SFG A 1 401 401 SFG SFG . D 2 SFG B 1 401 401 SFG SFG . E 3 HOH A 1 402 5 HOH HOH . E 3 HOH A 2 403 7 HOH HOH . E 3 HOH A 3 404 8 HOH HOH . E 3 HOH A 4 405 10 HOH HOH . E 3 HOH A 5 406 11 HOH HOH . E 3 HOH A 6 407 15 HOH HOH . E 3 HOH A 7 408 17 HOH HOH . E 3 HOH A 8 409 18 HOH HOH . E 3 HOH A 9 410 19 HOH HOH . E 3 HOH A 10 411 20 HOH HOH . E 3 HOH A 11 412 25 HOH HOH . E 3 HOH A 12 413 26 HOH HOH . E 3 HOH A 13 414 28 HOH HOH . E 3 HOH A 14 415 29 HOH HOH . E 3 HOH A 15 416 32 HOH HOH . E 3 HOH A 16 417 34 HOH HOH . E 3 HOH A 17 418 37 HOH HOH . E 3 HOH A 18 419 39 HOH HOH . E 3 HOH A 19 420 40 HOH HOH . E 3 HOH A 20 421 42 HOH HOH . E 3 HOH A 21 422 43 HOH HOH . E 3 HOH A 22 423 44 HOH HOH . E 3 HOH A 23 424 46 HOH HOH . E 3 HOH A 24 425 47 HOH HOH . E 3 HOH A 25 426 48 HOH HOH . E 3 HOH A 26 427 53 HOH HOH . E 3 HOH A 27 428 54 HOH HOH . E 3 HOH A 28 429 57 HOH HOH . E 3 HOH A 29 430 59 HOH HOH . E 3 HOH A 30 431 60 HOH HOH . E 3 HOH A 31 432 64 HOH HOH . E 3 HOH A 32 433 66 HOH HOH . E 3 HOH A 33 434 67 HOH HOH . E 3 HOH A 34 435 68 HOH HOH . E 3 HOH A 35 436 69 HOH HOH . E 3 HOH A 36 437 70 HOH HOH . E 3 HOH A 37 438 73 HOH HOH . E 3 HOH A 38 439 74 HOH HOH . E 3 HOH A 39 440 75 HOH HOH . E 3 HOH A 40 441 76 HOH HOH . E 3 HOH A 41 442 77 HOH HOH . E 3 HOH A 42 443 81 HOH HOH . E 3 HOH A 43 444 82 HOH HOH . E 3 HOH A 44 445 86 HOH HOH . E 3 HOH A 45 446 89 HOH HOH . E 3 HOH A 46 447 90 HOH HOH . E 3 HOH A 47 448 95 HOH HOH . E 3 HOH A 48 449 96 HOH HOH . E 3 HOH A 49 450 100 HOH HOH . E 3 HOH A 50 451 102 HOH HOH . E 3 HOH A 51 452 105 HOH HOH . E 3 HOH A 52 453 107 HOH HOH . E 3 HOH A 53 454 116 HOH HOH . E 3 HOH A 54 455 118 HOH HOH . E 3 HOH A 55 456 119 HOH HOH . E 3 HOH A 56 457 120 HOH HOH . E 3 HOH A 57 458 123 HOH HOH . E 3 HOH A 58 459 124 HOH HOH . E 3 HOH A 59 460 125 HOH HOH . E 3 HOH A 60 461 126 HOH HOH . E 3 HOH A 61 462 129 HOH HOH . E 3 HOH A 62 463 130 HOH HOH . E 3 HOH A 63 464 132 HOH HOH . E 3 HOH A 64 465 133 HOH HOH . E 3 HOH A 65 466 134 HOH HOH . E 3 HOH A 66 467 137 HOH HOH . E 3 HOH A 67 468 140 HOH HOH . E 3 HOH A 68 469 142 HOH HOH . E 3 HOH A 69 470 143 HOH HOH . E 3 HOH A 70 471 147 HOH HOH . E 3 HOH A 71 472 149 HOH HOH . E 3 HOH A 72 473 150 HOH HOH . E 3 HOH A 73 474 153 HOH HOH . E 3 HOH A 74 475 155 HOH HOH . E 3 HOH A 75 476 158 HOH HOH . E 3 HOH A 76 477 160 HOH HOH . E 3 HOH A 77 478 162 HOH HOH . E 3 HOH A 78 479 163 HOH HOH . E 3 HOH A 79 480 164 HOH HOH . E 3 HOH A 80 481 165 HOH HOH . F 3 HOH B 1 403 6 HOH HOH . F 3 HOH B 2 404 9 HOH HOH . F 3 HOH B 3 405 12 HOH HOH . F 3 HOH B 4 406 13 HOH HOH . F 3 HOH B 5 407 14 HOH HOH . F 3 HOH B 6 408 16 HOH HOH . F 3 HOH B 7 409 21 HOH HOH . F 3 HOH B 8 410 22 HOH HOH . F 3 HOH B 9 411 23 HOH HOH . F 3 HOH B 10 412 24 HOH HOH . F 3 HOH B 11 413 27 HOH HOH . F 3 HOH B 12 414 30 HOH HOH . F 3 HOH B 13 415 31 HOH HOH . F 3 HOH B 14 416 33 HOH HOH . F 3 HOH B 15 417 35 HOH HOH . F 3 HOH B 16 418 36 HOH HOH . F 3 HOH B 17 419 38 HOH HOH . F 3 HOH B 18 420 41 HOH HOH . F 3 HOH B 19 421 45 HOH HOH . F 3 HOH B 20 422 49 HOH HOH . F 3 HOH B 21 423 50 HOH HOH . F 3 HOH B 22 424 51 HOH HOH . F 3 HOH B 23 425 52 HOH HOH . F 3 HOH B 24 426 55 HOH HOH . F 3 HOH B 25 427 56 HOH HOH . F 3 HOH B 26 428 58 HOH HOH . F 3 HOH B 27 429 61 HOH HOH . F 3 HOH B 28 430 62 HOH HOH . F 3 HOH B 29 431 63 HOH HOH . F 3 HOH B 30 432 65 HOH HOH . F 3 HOH B 31 433 71 HOH HOH . F 3 HOH B 32 434 72 HOH HOH . F 3 HOH B 33 435 78 HOH HOH . F 3 HOH B 34 436 79 HOH HOH . F 3 HOH B 35 437 80 HOH HOH . F 3 HOH B 36 438 83 HOH HOH . F 3 HOH B 37 439 3 HOH HOH . F 3 HOH B 38 440 4 HOH HOH . F 3 HOH B 39 441 84 HOH HOH . F 3 HOH B 40 442 85 HOH HOH . F 3 HOH B 41 443 87 HOH HOH . F 3 HOH B 42 444 88 HOH HOH . F 3 HOH B 43 445 91 HOH HOH . F 3 HOH B 44 446 92 HOH HOH . F 3 HOH B 45 447 93 HOH HOH . F 3 HOH B 46 448 94 HOH HOH . F 3 HOH B 47 449 97 HOH HOH . F 3 HOH B 48 450 98 HOH HOH . F 3 HOH B 49 451 99 HOH HOH . F 3 HOH B 50 452 101 HOH HOH . F 3 HOH B 51 453 103 HOH HOH . F 3 HOH B 52 454 104 HOH HOH . F 3 HOH B 53 455 106 HOH HOH . F 3 HOH B 54 456 108 HOH HOH . F 3 HOH B 55 457 109 HOH HOH . F 3 HOH B 56 458 110 HOH HOH . F 3 HOH B 57 459 111 HOH HOH . F 3 HOH B 58 460 112 HOH HOH . F 3 HOH B 59 461 113 HOH HOH . F 3 HOH B 60 462 114 HOH HOH . F 3 HOH B 61 463 115 HOH HOH . F 3 HOH B 62 464 117 HOH HOH . F 3 HOH B 63 465 121 HOH HOH . F 3 HOH B 64 466 122 HOH HOH . F 3 HOH B 65 467 127 HOH HOH . F 3 HOH B 66 468 128 HOH HOH . F 3 HOH B 67 469 131 HOH HOH . F 3 HOH B 68 470 135 HOH HOH . F 3 HOH B 69 471 136 HOH HOH . F 3 HOH B 70 472 138 HOH HOH . F 3 HOH B 71 473 139 HOH HOH . F 3 HOH B 72 474 141 HOH HOH . F 3 HOH B 73 475 144 HOH HOH . F 3 HOH B 74 476 145 HOH HOH . F 3 HOH B 75 477 146 HOH HOH . F 3 HOH B 76 478 148 HOH HOH . F 3 HOH B 77 479 151 HOH HOH . F 3 HOH B 78 480 152 HOH HOH . F 3 HOH B 79 481 154 HOH HOH . F 3 HOH B 80 482 156 HOH HOH . F 3 HOH B 81 483 157 HOH HOH . F 3 HOH B 82 484 159 HOH HOH . F 3 HOH B 83 485 161 HOH HOH . F 3 HOH B 84 486 166 HOH HOH . F 3 HOH B 85 487 167 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SFG . . . C 2 2.332 -3.296 34.242 1 26.9 ? N SFG 401 A 1 HETATM 2 C CA SFG . . . C 2 3.601 -3.919 34.758 1 28.11 ? CA SFG 401 A 1 HETATM 3 C C SFG . . . C 2 4.58 -2.87 35.181 1 28.23 ? C SFG 401 A 1 HETATM 4 O O SFG . . . C 2 4.717 -1.838 34.506 1 28.32 ? O SFG 401 A 1 HETATM 5 O OXT SFG . . . C 2 5.292 -3.032 36.177 1 28.79 ? OXT SFG 401 A 1 HETATM 6 C CB SFG . . . C 2 4.362 -4.61 33.636 1 27.74 ? CB SFG 401 A 1 HETATM 7 C CG SFG . . . C 2 4.35 -6.113 33.495 1 26.42 ? CG SFG 401 A 1 HETATM 8 C CD SFG . . . C 2 4.586 -6.348 31.991 1 25.03 ? CD SFG 401 A 1 HETATM 9 N NE SFG . . . C 2 5.982 -6.552 31.647 1 22.5 ? NE SFG 401 A 1 HETATM 10 C C5' SFG . . . C 2 3.756 -7.469 31.36 1 23.82 ? C5' SFG 401 A 1 HETATM 11 C C4' SFG . . . C 2 2.565 -7.861 32.195 1 20.62 ? C4' SFG 401 A 1 HETATM 12 O O4' SFG . . . C 2 1.419 -8.08 31.377 1 20.51 ? O4' SFG 401 A 1 HETATM 13 C C3' SFG . . . C 2 2.846 -9.126 32.973 1 20.68 ? C3' SFG 401 A 1 HETATM 14 O O3' SFG . . . C 2 2.249 -8.944 34.265 1 17.56 ? O3' SFG 401 A 1 HETATM 15 C C2' SFG . . . C 2 2.08 -10.201 32.236 1 20.02 ? C2' SFG 401 A 1 HETATM 16 O O2' SFG . . . C 2 1.601 -11.133 33.197 1 23.16 ? O2' SFG 401 A 1 HETATM 17 C C1' SFG . . . C 2 0.911 -9.387 31.726 1 18.57 ? C1' SFG 401 A 1 HETATM 18 N N9 SFG . . . C 2 0.217 -9.983 30.577 1 17.02 ? N9 SFG 401 A 1 HETATM 19 C C8 SFG . . . C 2 0.754 -10.603 29.501 1 15.36 ? C8 SFG 401 A 1 HETATM 20 N N7 SFG . . . C 2 -0.249 -10.974 28.648 1 16.84 ? N7 SFG 401 A 1 HETATM 21 C C5 SFG . . . C 2 -1.425 -10.559 29.173 1 14.96 ? C5 SFG 401 A 1 HETATM 22 C C6 SFG . . . C 2 -2.854 -10.64 28.808 1 17.31 ? C6 SFG 401 A 1 HETATM 23 N N6 SFG . . . C 2 -3.25 -11.252 27.648 1 16.5 ? N6 SFG 401 A 1 HETATM 24 N N1 SFG . . . C 2 -3.738 -10.074 29.661 1 14.78 ? N1 SFG 401 A 1 HETATM 25 C C2 SFG . . . C 2 -3.351 -9.474 30.797 1 15.66 ? C2 SFG 401 A 1 HETATM 26 N N3 SFG . . . C 2 -2.087 -9.386 31.206 1 13.87 ? N3 SFG 401 A 1 HETATM 27 C C4 SFG . . . C 2 -1.106 -9.905 30.449 1 15.44 ? C4 SFG 401 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #