data_3EPR # _model_server_result.job_id '_eQWtvoX2OhwjVEfiWgdUQ' _model_server_result.datetime_utc '2025-04-22 08:33:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3epr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":266}' # _entry.id 3EPR # _exptl.entry_id 3EPR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3EPR _cell.length_a 82.367 _cell.length_b 82.954 _cell.length_c 99.604 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EPR _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1,2,3,4 A,B,C,D 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 82.367 82.954 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 82.367 0 0 4 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 82.954 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 11 A ASP 11 1_555 C NA NA . A NA 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc2 A O ASP 13 A ASP 13 1_555 C NA NA . A NA 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc3 A OD1 ASP 207 A ASP 207 1_555 C NA NA . A NA 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc4 C NA NA . A NA 266 1_555 D O HOH . A HOH 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc5 C NA NA . A NA 266 1_555 D O HOH . A HOH 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3EPR _atom_sites.fract_transf_matrix[1][1] 0.012141 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012055 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01004 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 265 1 GOL GOL . C 3 NA A 1 266 1 NA NA . D 4 HOH A 1 267 1 HOH HOH . D 4 HOH A 2 268 2 HOH HOH . D 4 HOH A 3 269 3 HOH HOH . D 4 HOH A 4 270 4 HOH HOH . D 4 HOH A 5 271 5 HOH HOH . D 4 HOH A 6 272 6 HOH HOH . D 4 HOH A 7 273 7 HOH HOH . D 4 HOH A 8 274 8 HOH HOH . D 4 HOH A 9 275 9 HOH HOH . D 4 HOH A 10 276 10 HOH HOH . D 4 HOH A 11 277 11 HOH HOH . D 4 HOH A 12 278 12 HOH HOH . D 4 HOH A 13 279 13 HOH HOH . D 4 HOH A 14 280 14 HOH HOH . D 4 HOH A 15 281 15 HOH HOH . D 4 HOH A 16 282 16 HOH HOH . D 4 HOH A 17 283 17 HOH HOH . D 4 HOH A 18 284 18 HOH HOH . D 4 HOH A 19 285 19 HOH HOH . D 4 HOH A 20 286 20 HOH HOH . D 4 HOH A 21 287 21 HOH HOH . D 4 HOH A 22 288 22 HOH HOH . D 4 HOH A 23 289 23 HOH HOH . D 4 HOH A 24 290 24 HOH HOH . D 4 HOH A 25 291 25 HOH HOH . D 4 HOH A 26 292 26 HOH HOH . D 4 HOH A 27 293 27 HOH HOH . D 4 HOH A 28 294 28 HOH HOH . D 4 HOH A 29 295 29 HOH HOH . D 4 HOH A 30 296 30 HOH HOH . D 4 HOH A 31 297 31 HOH HOH . D 4 HOH A 32 298 32 HOH HOH . D 4 HOH A 33 299 33 HOH HOH . D 4 HOH A 34 300 34 HOH HOH . D 4 HOH A 35 301 37 HOH HOH . D 4 HOH A 36 302 38 HOH HOH . D 4 HOH A 37 303 40 HOH HOH . D 4 HOH A 38 304 41 HOH HOH . D 4 HOH A 39 305 42 HOH HOH . D 4 HOH A 40 306 43 HOH HOH . D 4 HOH A 41 307 44 HOH HOH . D 4 HOH A 42 308 45 HOH HOH . D 4 HOH A 43 309 46 HOH HOH . D 4 HOH A 44 310 47 HOH HOH . D 4 HOH A 45 311 48 HOH HOH . D 4 HOH A 46 312 49 HOH HOH . D 4 HOH A 47 313 51 HOH HOH . D 4 HOH A 48 314 52 HOH HOH . D 4 HOH A 49 315 53 HOH HOH . D 4 HOH A 50 316 54 HOH HOH . D 4 HOH A 51 317 55 HOH HOH . D 4 HOH A 52 318 57 HOH HOH . D 4 HOH A 53 319 58 HOH HOH . D 4 HOH A 54 320 59 HOH HOH . D 4 HOH A 55 321 60 HOH HOH . D 4 HOH A 56 322 61 HOH HOH . D 4 HOH A 57 323 62 HOH HOH . D 4 HOH A 58 324 64 HOH HOH . D 4 HOH A 59 325 65 HOH HOH . D 4 HOH A 60 326 66 HOH HOH . D 4 HOH A 61 327 67 HOH HOH . D 4 HOH A 62 328 68 HOH HOH . D 4 HOH A 63 329 69 HOH HOH . D 4 HOH A 64 330 70 HOH HOH . D 4 HOH A 65 331 71 HOH HOH . D 4 HOH A 66 332 72 HOH HOH . D 4 HOH A 67 333 73 HOH HOH . D 4 HOH A 68 334 74 HOH HOH . D 4 HOH A 69 335 75 HOH HOH . D 4 HOH A 70 336 76 HOH HOH . D 4 HOH A 71 337 77 HOH HOH . D 4 HOH A 72 338 78 HOH HOH . D 4 HOH A 73 339 79 HOH HOH . D 4 HOH A 74 340 80 HOH HOH . D 4 HOH A 75 341 81 HOH HOH . D 4 HOH A 76 342 82 HOH HOH . D 4 HOH A 77 343 83 HOH HOH . D 4 HOH A 78 344 84 HOH HOH . D 4 HOH A 79 345 85 HOH HOH . D 4 HOH A 80 346 86 HOH HOH . D 4 HOH A 81 347 87 HOH HOH . D 4 HOH A 82 348 88 HOH HOH . D 4 HOH A 83 349 89 HOH HOH . D 4 HOH A 84 350 90 HOH HOH . D 4 HOH A 85 351 91 HOH HOH . D 4 HOH A 86 352 92 HOH HOH . D 4 HOH A 87 353 93 HOH HOH . D 4 HOH A 88 354 94 HOH HOH . D 4 HOH A 89 355 95 HOH HOH . D 4 HOH A 90 356 96 HOH HOH . D 4 HOH A 91 357 97 HOH HOH . D 4 HOH A 92 358 98 HOH HOH . D 4 HOH A 93 359 99 HOH HOH . D 4 HOH A 94 360 100 HOH HOH . D 4 HOH A 95 361 101 HOH HOH . D 4 HOH A 96 362 102 HOH HOH . D 4 HOH A 97 363 103 HOH HOH . D 4 HOH A 98 364 104 HOH HOH . D 4 HOH A 99 365 105 HOH HOH . D 4 HOH A 100 366 106 HOH HOH . D 4 HOH A 101 367 107 HOH HOH . D 4 HOH A 102 368 108 HOH HOH . D 4 HOH A 103 369 109 HOH HOH . D 4 HOH A 104 370 110 HOH HOH . D 4 HOH A 105 371 111 HOH HOH . D 4 HOH A 106 372 112 HOH HOH . D 4 HOH A 107 373 113 HOH HOH . D 4 HOH A 108 374 114 HOH HOH . D 4 HOH A 109 375 115 HOH HOH . D 4 HOH A 110 376 116 HOH HOH . D 4 HOH A 111 377 117 HOH HOH . D 4 HOH A 112 378 118 HOH HOH . D 4 HOH A 113 379 119 HOH HOH . D 4 HOH A 114 380 120 HOH HOH . D 4 HOH A 115 381 121 HOH HOH . D 4 HOH A 116 382 122 HOH HOH . D 4 HOH A 117 383 123 HOH HOH . D 4 HOH A 118 384 124 HOH HOH . D 4 HOH A 119 385 125 HOH HOH . D 4 HOH A 120 386 126 HOH HOH . D 4 HOH A 121 387 127 HOH HOH . D 4 HOH A 122 388 128 HOH HOH . D 4 HOH A 123 389 129 HOH HOH . D 4 HOH A 124 390 130 HOH HOH . D 4 HOH A 125 391 131 HOH HOH . D 4 HOH A 126 392 132 HOH HOH . D 4 HOH A 127 393 133 HOH HOH . D 4 HOH A 128 394 134 HOH HOH . D 4 HOH A 129 395 135 HOH HOH . D 4 HOH A 130 396 136 HOH HOH . D 4 HOH A 131 397 137 HOH HOH . D 4 HOH A 132 398 138 HOH HOH . D 4 HOH A 133 399 139 HOH HOH . D 4 HOH A 134 400 140 HOH HOH . D 4 HOH A 135 401 141 HOH HOH . D 4 HOH A 136 402 142 HOH HOH . D 4 HOH A 137 403 143 HOH HOH . D 4 HOH A 138 404 144 HOH HOH . D 4 HOH A 139 405 145 HOH HOH . D 4 HOH A 140 406 147 HOH HOH . D 4 HOH A 141 407 148 HOH HOH . D 4 HOH A 142 408 149 HOH HOH . D 4 HOH A 143 409 150 HOH HOH . D 4 HOH A 144 410 151 HOH HOH . D 4 HOH A 145 411 152 HOH HOH . D 4 HOH A 146 412 153 HOH HOH . D 4 HOH A 147 413 154 HOH HOH . D 4 HOH A 148 414 156 HOH HOH . D 4 HOH A 149 415 157 HOH HOH . D 4 HOH A 150 416 158 HOH HOH . D 4 HOH A 151 417 159 HOH HOH . D 4 HOH A 152 418 160 HOH HOH . D 4 HOH A 153 419 162 HOH HOH . D 4 HOH A 154 420 163 HOH HOH . D 4 HOH A 155 421 164 HOH HOH . D 4 HOH A 156 422 165 HOH HOH . D 4 HOH A 157 423 166 HOH HOH . D 4 HOH A 158 424 167 HOH HOH . D 4 HOH A 159 425 168 HOH HOH . D 4 HOH A 160 426 169 HOH HOH . D 4 HOH A 161 427 171 HOH HOH . D 4 HOH A 162 428 172 HOH HOH . D 4 HOH A 163 429 173 HOH HOH . D 4 HOH A 164 430 174 HOH HOH . D 4 HOH A 165 431 175 HOH HOH . D 4 HOH A 166 432 176 HOH HOH . D 4 HOH A 167 433 178 HOH HOH . D 4 HOH A 168 434 179 HOH HOH . D 4 HOH A 169 435 180 HOH HOH . D 4 HOH A 170 436 181 HOH HOH . D 4 HOH A 171 437 182 HOH HOH . D 4 HOH A 172 438 183 HOH HOH . D 4 HOH A 173 439 184 HOH HOH . D 4 HOH A 174 440 185 HOH HOH . D 4 HOH A 175 441 186 HOH HOH . D 4 HOH A 176 442 187 HOH HOH . D 4 HOH A 177 443 188 HOH HOH . D 4 HOH A 178 444 189 HOH HOH . D 4 HOH A 179 445 190 HOH HOH . D 4 HOH A 180 446 192 HOH HOH . D 4 HOH A 181 447 193 HOH HOH . D 4 HOH A 182 448 194 HOH HOH . D 4 HOH A 183 449 195 HOH HOH . D 4 HOH A 184 450 196 HOH HOH . D 4 HOH A 185 451 197 HOH HOH . D 4 HOH A 186 452 198 HOH HOH . D 4 HOH A 187 453 199 HOH HOH . D 4 HOH A 188 454 200 HOH HOH . D 4 HOH A 189 455 202 HOH HOH . D 4 HOH A 190 456 203 HOH HOH . D 4 HOH A 191 457 204 HOH HOH . D 4 HOH A 192 458 205 HOH HOH . D 4 HOH A 193 459 206 HOH HOH . D 4 HOH A 194 460 207 HOH HOH . D 4 HOH A 195 461 208 HOH HOH . D 4 HOH A 196 462 209 HOH HOH . D 4 HOH A 197 463 210 HOH HOH . D 4 HOH A 198 464 212 HOH HOH . D 4 HOH A 199 465 213 HOH HOH . D 4 HOH A 200 466 214 HOH HOH . D 4 HOH A 201 467 216 HOH HOH . D 4 HOH A 202 468 218 HOH HOH . D 4 HOH A 203 469 219 HOH HOH . D 4 HOH A 204 470 220 HOH HOH . D 4 HOH A 205 471 222 HOH HOH . D 4 HOH A 206 472 223 HOH HOH . D 4 HOH A 207 473 224 HOH HOH . D 4 HOH A 208 474 225 HOH HOH . D 4 HOH A 209 475 226 HOH HOH . D 4 HOH A 210 476 227 HOH HOH . D 4 HOH A 211 477 229 HOH HOH . D 4 HOH A 212 478 231 HOH HOH . D 4 HOH A 213 479 232 HOH HOH . D 4 HOH A 214 480 234 HOH HOH . D 4 HOH A 215 481 237 HOH HOH . D 4 HOH A 216 482 238 HOH HOH . D 4 HOH A 217 483 239 HOH HOH . D 4 HOH A 218 484 241 HOH HOH . D 4 HOH A 219 485 242 HOH HOH . D 4 HOH A 220 486 243 HOH HOH . D 4 HOH A 221 487 246 HOH HOH . D 4 HOH A 222 488 250 HOH HOH . D 4 HOH A 223 489 252 HOH HOH . D 4 HOH A 224 490 253 HOH HOH . D 4 HOH A 225 491 254 HOH HOH . D 4 HOH A 226 492 255 HOH HOH . D 4 HOH A 227 493 257 HOH HOH . D 4 HOH A 228 494 259 HOH HOH . D 4 HOH A 229 495 260 HOH HOH . D 4 HOH A 230 496 1 HOH HOH . D 4 HOH A 231 497 3 HOH HOH . D 4 HOH A 232 498 5 HOH HOH . D 4 HOH A 233 499 13 HOH HOH . D 4 HOH A 234 500 15 HOH HOH . D 4 HOH A 235 501 17 HOH HOH . D 4 HOH A 236 502 18 HOH HOH . D 4 HOH A 237 503 19 HOH HOH . D 4 HOH A 238 504 20 HOH HOH . D 4 HOH A 239 505 21 HOH HOH . D 4 HOH A 240 506 25 HOH HOH . D 4 HOH A 241 507 27 HOH HOH . D 4 HOH A 242 508 29 HOH HOH . D 4 HOH A 243 509 31 HOH HOH . D 4 HOH A 244 510 34 HOH HOH . D 4 HOH A 245 511 37 HOH HOH . D 4 HOH A 246 512 38 HOH HOH . D 4 HOH A 247 513 39 HOH HOH . D 4 HOH A 248 514 40 HOH HOH . D 4 HOH A 249 515 42 HOH HOH . D 4 HOH A 250 516 43 HOH HOH . D 4 HOH A 251 517 44 HOH HOH . D 4 HOH A 252 518 45 HOH HOH . D 4 HOH A 253 519 49 HOH HOH . D 4 HOH A 254 520 50 HOH HOH . D 4 HOH A 255 521 51 HOH HOH . D 4 HOH A 256 522 52 HOH HOH . D 4 HOH A 257 523 54 HOH HOH . D 4 HOH A 258 524 61 HOH HOH . D 4 HOH A 259 525 63 HOH HOH . D 4 HOH A 260 526 64 HOH HOH . D 4 HOH A 261 527 68 HOH HOH . D 4 HOH A 262 528 74 HOH HOH . D 4 HOH A 263 529 76 HOH HOH . D 4 HOH A 264 530 79 HOH HOH . D 4 HOH A 265 531 202 HOH HOH . D 4 HOH A 266 532 233 HOH HOH . D 4 HOH A 267 533 234 HOH HOH . D 4 HOH A 268 534 239 HOH HOH . D 4 HOH A 269 535 241 HOH HOH . D 4 HOH A 270 536 243 HOH HOH . D 4 HOH A 271 537 244 HOH HOH . D 4 HOH A 272 538 253 HOH HOH . D 4 HOH A 273 539 263 HOH HOH . D 4 HOH A 274 540 265 HOH HOH . D 4 HOH A 275 541 266 HOH HOH . D 4 HOH A 276 542 267 HOH HOH . D 4 HOH A 277 543 268 HOH HOH . D 4 HOH A 278 544 269 HOH HOH . D 4 HOH A 279 545 270 HOH HOH . D 4 HOH A 280 546 271 HOH HOH . D 4 HOH A 281 547 273 HOH HOH . D 4 HOH A 282 548 274 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 24.063 _atom_site.Cartn_y 29.833 _atom_site.Cartn_z 15.759 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 21.48 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 266 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 477 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #