data_3EPS # _model_server_result.job_id 5hI4bgEueaw-dh-UeVjgvw _model_server_result.datetime_utc '2024-10-19 05:25:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3eps # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1605}' # _entry.id 3EPS # _exptl.entry_id 3EPS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3EPS _cell.length_a 124.595 _cell.length_b 124.595 _cell.length_c 267.635 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EPS _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 462 A ASN 462 1_555 E MG MG . A MG 1606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc2 A OD1 ASP 475 A ASP 475 1_555 E MG MG . A MG 1606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc3 D O1A ATP . A ATP 1605 1_555 E MG MG . A MG 1606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc4 D O2B ATP . A ATP 1605 1_555 E MG MG . A MG 1606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc5 B OD1 ASN 462 B ASN 462 1_555 H MG MG . B MG 1606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc6 B OD1 ASP 475 B ASP 475 1_555 H MG MG . B MG 1606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc7 G O2B ATP . B ATP 1605 1_555 H MG MG . B MG 1606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc8 G O1A ATP . B ATP 1605 1_555 H MG MG . B MG 1606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 109 n n PG O2G ATP sing 110 n n PG O3G ATP sing 111 n n PG O3B ATP sing 112 n n O2G HOG2 ATP sing 113 n n O3G HOG3 ATP sing 114 n n PB O1B ATP doub 115 n n PB O2B ATP sing 116 n n PB O3B ATP sing 117 n n PB O3A ATP sing 118 n n O2B HOB2 ATP sing 119 n n PA O1A ATP doub 120 n n PA O2A ATP sing 121 n n PA O3A ATP sing 122 n n PA O5' ATP sing 123 n n O2A HOA2 ATP sing 124 n n O5' C5' ATP sing 125 n n C5' C4' ATP sing 126 n n C5' "H5'1" ATP sing 127 n n C5' "H5'2" ATP sing 128 n n C4' O4' ATP sing 129 n n C4' C3' ATP sing 130 n n C4' H4' ATP sing 131 n n O4' C1' ATP sing 132 n n C3' O3' ATP sing 133 n n C3' C2' ATP sing 134 n n C3' H3' ATP sing 135 n n O3' HO3' ATP sing 136 n n C2' O2' ATP sing 137 n n C2' C1' ATP sing 138 n n C2' H2' ATP sing 139 n n O2' HO2' ATP sing 140 n n C1' N9 ATP sing 141 n n C1' H1' ATP sing 142 n n N9 C8 ATP sing 143 n y N9 C4 ATP sing 144 n y C8 N7 ATP doub 145 n y C8 H8 ATP sing 146 n n N7 C5 ATP sing 147 n y C5 C6 ATP sing 148 n y C5 C4 ATP doub 149 n y C6 N6 ATP sing 150 n n C6 N1 ATP doub 151 n y N6 HN61 ATP sing 152 n n N6 HN62 ATP sing 153 n n N1 C2 ATP sing 154 n y C2 N3 ATP doub 155 n y C2 H2 ATP sing 156 n n N3 C4 ATP sing 157 n y # _atom_sites.entry_id 3EPS _atom_sites.fract_transf_matrix[1][1] 0.008026 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008026 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003736 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AMP A 1 1604 1604 AMP AMP . D 3 ATP A 1 1605 1605 ATP ATP . E 4 MG A 1 1606 1606 MG MG . F 2 AMP B 1 1604 1604 AMP AMP . G 3 ATP B 1 1605 1605 ATP ATP . H 4 MG B 1 1606 1606 MG MG . I 5 HOH A 1 579 1 HOH HOH . I 5 HOH A 2 580 2 HOH HOH . I 5 HOH A 3 581 3 HOH HOH . I 5 HOH A 4 582 4 HOH HOH . I 5 HOH A 5 583 5 HOH HOH . I 5 HOH A 6 584 6 HOH HOH . I 5 HOH A 7 585 7 HOH HOH . I 5 HOH A 8 586 8 HOH HOH . I 5 HOH A 9 587 9 HOH HOH . I 5 HOH A 10 588 10 HOH HOH . I 5 HOH A 11 589 11 HOH HOH . I 5 HOH A 12 590 12 HOH HOH . I 5 HOH A 13 591 13 HOH HOH . I 5 HOH A 14 592 14 HOH HOH . I 5 HOH A 15 593 15 HOH HOH . I 5 HOH A 16 594 16 HOH HOH . I 5 HOH A 17 595 17 HOH HOH . I 5 HOH A 18 596 18 HOH HOH . I 5 HOH A 19 597 28 HOH HOH . I 5 HOH A 20 598 33 HOH HOH . I 5 HOH A 21 599 34 HOH HOH . I 5 HOH A 22 600 35 HOH HOH . I 5 HOH A 23 601 36 HOH HOH . I 5 HOH A 24 602 38 HOH HOH . I 5 HOH A 25 603 42 HOH HOH . I 5 HOH A 26 604 43 HOH HOH . I 5 HOH A 27 605 44 HOH HOH . I 5 HOH A 28 606 49 HOH HOH . J 5 HOH B 1 579 19 HOH HOH . J 5 HOH B 2 580 20 HOH HOH . J 5 HOH B 3 581 21 HOH HOH . J 5 HOH B 4 582 22 HOH HOH . J 5 HOH B 5 583 23 HOH HOH . J 5 HOH B 6 584 24 HOH HOH . J 5 HOH B 7 585 25 HOH HOH . J 5 HOH B 8 586 26 HOH HOH . J 5 HOH B 9 587 27 HOH HOH . J 5 HOH B 10 588 29 HOH HOH . J 5 HOH B 11 589 30 HOH HOH . J 5 HOH B 12 590 31 HOH HOH . J 5 HOH B 13 591 32 HOH HOH . J 5 HOH B 14 592 37 HOH HOH . J 5 HOH B 15 593 39 HOH HOH . J 5 HOH B 16 594 40 HOH HOH . J 5 HOH B 17 595 41 HOH HOH . J 5 HOH B 18 596 45 HOH HOH . J 5 HOH B 19 597 46 HOH HOH . J 5 HOH B 20 598 47 HOH HOH . J 5 HOH B 21 599 48 HOH HOH . J 5 HOH B 22 600 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . G 3 28.301 8.522 39.835 1 59.88 ? PG ATP 1605 B 1 HETATM 2 O O1G ATP . . . G 3 29.658 8.295 40.381 1 62.61 ? O1G ATP 1605 B 1 HETATM 3 O O2G ATP . . . G 3 27.916 7.145 39.113 1 74.46 ? O2G ATP 1605 B 1 HETATM 4 O O3G ATP . . . G 3 28.319 9.72 38.755 1 59.85 ? O3G ATP 1605 B 1 HETATM 5 P PB ATP . . . G 3 27.741 10.25 41.652 1 64.36 ? PB ATP 1605 B 1 HETATM 6 O O1B ATP . . . G 3 29.24 10.343 41.785 1 69.02 ? O1B ATP 1605 B 1 HETATM 7 O O2B ATP . . . G 3 27.156 11.211 40.482 1 63.17 ? O2B ATP 1605 B 1 HETATM 8 O O3B ATP . . . G 3 27.273 8.82 41.15 1 60.12 ? O3B ATP 1605 B 1 HETATM 9 P PA ATP . . . G 3 27.982 12.418 42.965 1 55.89 ? PA ATP 1605 B 1 HETATM 10 O O1A ATP . . . G 3 28.201 13.05 41.598 1 52.47 ? O1A ATP 1605 B 1 HETATM 11 O O2A ATP . . . G 3 29.455 12.154 43.575 1 51.9 ? O2A ATP 1605 B 1 HETATM 12 O O3A ATP . . . G 3 27.103 10.956 42.922 1 47.67 ? O3A ATP 1605 B 1 HETATM 13 O O5' ATP . . . G 3 27.244 13.386 43.999 1 77.08 ? O5' ATP 1605 B 1 HETATM 14 C C5' ATP . . . G 3 27.842 14.642 43.775 1 77.08 ? C5' ATP 1605 B 1 HETATM 15 C C4' ATP . . . G 3 27.108 15.634 44.597 1 77.08 ? C4' ATP 1605 B 1 HETATM 16 O O4' ATP . . . G 3 27.297 15.361 45.999 1 77.08 ? O4' ATP 1605 B 1 HETATM 17 C C3' ATP . . . G 3 27.604 17.033 44.297 1 77.08 ? C3' ATP 1605 B 1 HETATM 18 O O3' ATP . . . G 3 26.52 17.816 43.815 1 77.08 ? O3' ATP 1605 B 1 HETATM 19 C C2' ATP . . . G 3 28.17 17.564 45.583 1 77.08 ? C2' ATP 1605 B 1 HETATM 20 O O2' ATP . . . G 3 27.459 18.729 46.007 1 77.08 ? O2' ATP 1605 B 1 HETATM 21 C C1' ATP . . . G 3 28.054 16.433 46.598 1 77.08 ? C1' ATP 1605 B 1 HETATM 22 N N9 ATP . . . G 3 29.414 16.031 46.931 1 53.56 ? N9 ATP 1605 B 1 HETATM 23 C C8 ATP . . . G 3 30.02 14.883 46.502 1 55.51 ? C8 ATP 1605 B 1 HETATM 24 N N7 ATP . . . G 3 31.229 14.828 46.974 1 59.66 ? N7 ATP 1605 B 1 HETATM 25 C C5 ATP . . . G 3 31.462 15.926 47.726 1 48.38 ? C5 ATP 1605 B 1 HETATM 26 C C6 ATP . . . G 3 32.551 16.403 48.471 1 53.74 ? C6 ATP 1605 B 1 HETATM 27 N N6 ATP . . . G 3 33.723 15.663 48.529 1 57.14 ? N6 ATP 1605 B 1 HETATM 28 N N1 ATP . . . G 3 32.425 17.59 49.126 1 53.98 ? N1 ATP 1605 B 1 HETATM 29 C C2 ATP . . . G 3 31.295 18.3 49.069 1 50.5 ? C2 ATP 1605 B 1 HETATM 30 N N3 ATP . . . G 3 30.241 17.878 48.37 1 48.92 ? N3 ATP 1605 B 1 HETATM 31 C C4 ATP . . . G 3 30.289 16.716 47.701 1 51.4 ? C4 ATP 1605 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #