data_3EPT
#
_model_server_result.job_id            wjVI5zPmXdiUPooQ6j8reQ 
_model_server_result.datetime_utc      '2025-08-31 17:48:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ept 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":710}' 
#
_entry.id    3EPT 
#
_exptl.entry_id    3EPT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              787.566 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIHYDROFLAVINE-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.66 
_cell.angle_gamma         90 
_cell.entry_id            3EPT 
_cell.length_a            63.261 
_cell.length_b            78.223 
_cell.length_c            123.063 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3EPT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,F 1 1 
B,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
_chem_comp.formula           'C27 H35 N9 O15 P2' 
_chem_comp.formula_weight    787.566 
_chem_comp.id                FDA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIHYDROFLAVINE-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FDA doub 83 n n 
PA O2A FDA sing 84 n n 
PA O5B FDA sing 85 n n 
PA O3P FDA sing 86 n n 
O2A HOA2 FDA sing 87 n n 
O5B C5B FDA sing 88 n n 
C5B C4B FDA sing 89 n n 
C5B H51A FDA sing 90 n n 
C5B H52A FDA sing 91 n n 
C4B O4B FDA sing 92 n n 
C4B C3B FDA sing 93 n n 
C4B H4B FDA sing 94 n n 
O4B C1B FDA sing 95 n n 
C3B O3B FDA sing 96 n n 
C3B C2B FDA sing 97 n n 
C3B H3B FDA sing 98 n n 
O3B HO3A FDA sing 99 n n 
C2B O2B FDA sing 100 n n 
C2B C1B FDA sing 101 n n 
C2B H2B FDA sing 102 n n 
O2B HO2A FDA sing 103 n n 
C1B N9A FDA sing 104 n n 
C1B H1B FDA sing 105 n n 
N9A C8A FDA sing 106 n y 
N9A C4A FDA sing 107 n y 
C8A N7A FDA doub 108 n y 
C8A H8A FDA sing 109 n n 
N7A C5A FDA sing 110 n y 
C5A C6A FDA sing 111 n y 
C5A C4A FDA doub 112 n y 
C6A N6A FDA sing 113 n n 
C6A N1A FDA doub 114 n y 
N6A H61A FDA sing 115 n n 
N6A H62A FDA sing 116 n n 
N1A C2A FDA sing 117 n y 
C2A N3A FDA doub 118 n y 
C2A H2A FDA sing 119 n n 
N3A C4A FDA sing 120 n y 
N1 C2 FDA sing 121 n n 
N1 C10 FDA sing 122 n n 
N1 HN1 FDA sing 123 n n 
C2 O2 FDA doub 124 n n 
C2 N3 FDA sing 125 n n 
N3 C4 FDA sing 126 n n 
N3 HN3 FDA sing 127 n n 
C4 O4 FDA doub 128 n n 
C4 C4X FDA sing 129 n n 
C4X N5 FDA sing 130 n n 
C4X C10 FDA doub 131 n n 
N5 C5X FDA sing 132 n n 
N5 HN5 FDA sing 133 n n 
C5X C6 FDA doub 134 n y 
C5X C9A FDA sing 135 n y 
C6 C7 FDA sing 136 n y 
C6 H6 FDA sing 137 n n 
C7 C7M FDA sing 138 n n 
C7 C8 FDA doub 139 n y 
C7M HM71 FDA sing 140 n n 
C7M HM72 FDA sing 141 n n 
C7M HM73 FDA sing 142 n n 
C8 C8M FDA sing 143 n n 
C8 C9 FDA sing 144 n y 
C8M HM81 FDA sing 145 n n 
C8M HM82 FDA sing 146 n n 
C8M HM83 FDA sing 147 n n 
C9 C9A FDA doub 148 n y 
C9 H9 FDA sing 149 n n 
C9A N10 FDA sing 150 n n 
N10 C10 FDA sing 151 n n 
N10 C1' FDA sing 152 n n 
C1' C2' FDA sing 153 n n 
C1' "H1'1" FDA sing 154 n n 
C1' "H1'2" FDA sing 155 n n 
C2' O2' FDA sing 156 n n 
C2' C3' FDA sing 157 n n 
C2' H2' FDA sing 158 n n 
O2' HO2' FDA sing 159 n n 
C3' O3' FDA sing 160 n n 
C3' C4' FDA sing 161 n n 
C3' H3' FDA sing 162 n n 
O3' HO3' FDA sing 163 n n 
C4' O4' FDA sing 164 n n 
C4' C5' FDA sing 165 n n 
C4' H4' FDA sing 166 n n 
O4' HO4' FDA sing 167 n n 
C5' O5' FDA sing 168 n n 
C5' "H5'1" FDA sing 169 n n 
C5' "H5'2" FDA sing 170 n n 
O5' P FDA sing 171 n n 
P O1P FDA doub 172 n n 
P O2P FDA sing 173 n n 
P O3P FDA sing 174 n n 
O2P HOP2 FDA sing 175 n n 
#
_atom_sites.entry_id                     3EPT 
_atom_sites.fract_transf_matrix[1][1]    0.015808 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002408 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012784 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00822 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NA A 1 530 1 NA NA . 
D 3 FDA A 1 710 710 FDA FDA . 
E 3 FDA B 1 711 711 FDA FDA . 
F 4 HOH A 1 711 2 HOH HOH . 
F 4 HOH A 2 712 3 HOH HOH . 
F 4 HOH A 3 713 7 HOH HOH . 
F 4 HOH A 4 714 8 HOH HOH . 
F 4 HOH A 5 715 9 HOH HOH . 
F 4 HOH A 6 716 14 HOH HOH . 
F 4 HOH A 7 717 21 HOH HOH . 
F 4 HOH A 8 718 25 HOH HOH . 
F 4 HOH A 9 719 29 HOH HOH . 
F 4 HOH A 10 720 30 HOH HOH . 
F 4 HOH A 11 721 32 HOH HOH . 
F 4 HOH A 12 722 44 HOH HOH . 
F 4 HOH A 13 723 51 HOH HOH . 
F 4 HOH A 14 724 63 HOH HOH . 
F 4 HOH A 15 725 64 HOH HOH . 
F 4 HOH A 16 726 65 HOH HOH . 
F 4 HOH A 17 727 67 HOH HOH . 
F 4 HOH A 18 728 68 HOH HOH . 
F 4 HOH A 19 729 69 HOH HOH . 
F 4 HOH A 20 730 70 HOH HOH . 
F 4 HOH A 21 731 71 HOH HOH . 
F 4 HOH A 22 732 73 HOH HOH . 
F 4 HOH A 23 733 74 HOH HOH . 
F 4 HOH A 24 734 75 HOH HOH . 
F 4 HOH A 25 735 77 HOH HOH . 
F 4 HOH A 26 736 78 HOH HOH . 
F 4 HOH A 27 737 79 HOH HOH . 
F 4 HOH A 28 738 80 HOH HOH . 
F 4 HOH A 29 739 81 HOH HOH . 
F 4 HOH A 30 740 82 HOH HOH . 
G 4 HOH B 1 712 4 HOH HOH . 
G 4 HOH B 2 713 5 HOH HOH . 
G 4 HOH B 3 714 13 HOH HOH . 
G 4 HOH B 4 715 15 HOH HOH . 
G 4 HOH B 5 716 16 HOH HOH . 
G 4 HOH B 6 717 17 HOH HOH . 
G 4 HOH B 7 718 19 HOH HOH . 
G 4 HOH B 8 719 20 HOH HOH . 
G 4 HOH B 9 720 22 HOH HOH . 
G 4 HOH B 10 721 23 HOH HOH . 
G 4 HOH B 11 722 26 HOH HOH . 
G 4 HOH B 12 723 27 HOH HOH . 
G 4 HOH B 13 724 34 HOH HOH . 
G 4 HOH B 14 725 36 HOH HOH . 
G 4 HOH B 15 726 37 HOH HOH . 
G 4 HOH B 16 727 38 HOH HOH . 
G 4 HOH B 17 728 39 HOH HOH . 
G 4 HOH B 18 729 40 HOH HOH . 
G 4 HOH B 19 730 42 HOH HOH . 
G 4 HOH B 20 731 43 HOH HOH . 
G 4 HOH B 21 732 45 HOH HOH . 
G 4 HOH B 22 733 46 HOH HOH . 
G 4 HOH B 23 734 47 HOH HOH . 
G 4 HOH B 24 735 48 HOH HOH . 
G 4 HOH B 25 736 49 HOH HOH . 
G 4 HOH B 26 737 50 HOH HOH . 
G 4 HOH B 27 738 52 HOH HOH . 
G 4 HOH B 28 739 54 HOH HOH . 
G 4 HOH B 29 740 55 HOH HOH . 
G 4 HOH B 30 741 57 HOH HOH . 
G 4 HOH B 31 742 58 HOH HOH . 
G 4 HOH B 32 743 59 HOH HOH . 
G 4 HOH B 33 744 60 HOH HOH . 
G 4 HOH B 34 745 61 HOH HOH . 
G 4 HOH B 35 746 83 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FDA . . . D 3 -6.896 29.219 38.014 1 37 ? PA FDA 710 A 1 
HETATM 2 O O1A FDA . . . D 3 -7.588 28.535 39.114 1 37.55 ? O1A FDA 710 A 1 
HETATM 3 O O2A FDA . . . D 3 -6.451 28.415 36.837 1 38.96 ? O2A FDA 710 A 1 
HETATM 4 O O5B FDA . . . D 3 -7.872 30.409 37.605 1 34.49 ? O5B FDA 710 A 1 
HETATM 5 C C5B FDA . . . D 3 -7.641 31.385 36.548 1 33.74 ? C5B FDA 710 A 1 
HETATM 6 C C4B FDA . . . D 3 -8.79 32.383 36.759 1 34.45 ? C4B FDA 710 A 1 
HETATM 7 O O4B FDA . . . D 3 -8.563 33.462 35.819 1 36.71 ? O4B FDA 710 A 1 
HETATM 8 C C3B FDA . . . D 3 -10.188 31.872 36.472 1 34.66 ? C3B FDA 710 A 1 
HETATM 9 O O3B FDA . . . D 3 -11.075 32.147 37.517 1 33.01 ? O3B FDA 710 A 1 
HETATM 10 C C2B FDA . . . D 3 -10.526 32.528 35.146 1 35.85 ? C2B FDA 710 A 1 
HETATM 11 O O2B FDA . . . D 3 -11.896 32.646 34.801 1 36.38 ? O2B FDA 710 A 1 
HETATM 12 C C1B FDA . . . D 3 -9.811 33.826 35.246 1 36.85 ? C1B FDA 710 A 1 
HETATM 13 N N9A FDA . . . D 3 -9.475 34.499 33.992 1 40.11 ? N9A FDA 710 A 1 
HETATM 14 C C8A FDA . . . D 3 -8.636 34.041 33.008 1 42.32 ? C8A FDA 710 A 1 
HETATM 15 N N7A FDA . . . D 3 -8.516 34.875 31.99 1 43.89 ? N7A FDA 710 A 1 
HETATM 16 C C5A FDA . . . D 3 -9.324 35.934 32.331 1 42.68 ? C5A FDA 710 A 1 
HETATM 17 C C6A FDA . . . D 3 -9.632 37.156 31.675 1 42.12 ? C6A FDA 710 A 1 
HETATM 18 N N6A FDA . . . D 3 -9.09 37.469 30.459 1 42.55 ? N6A FDA 710 A 1 
HETATM 19 N N1A FDA . . . D 3 -10.49 38.037 32.276 1 41.16 ? N1A FDA 710 A 1 
HETATM 20 C C2A FDA . . . D 3 -11.009 37.721 33.463 1 38.56 ? C2A FDA 710 A 1 
HETATM 21 N N3A FDA . . . D 3 -10.806 36.599 34.207 1 40.11 ? N3A FDA 710 A 1 
HETATM 22 C C4A FDA . . . D 3 -9.921 35.712 33.564 1 41.27 ? C4A FDA 710 A 1 
HETATM 23 N N1 FDA . . . D 3 -3.885 22.16 43.657 1 38.79 ? N1 FDA 710 A 1 
HETATM 24 C C2 FDA . . . D 3 -3.81 22.103 44.996 1 38.48 ? C2 FDA 710 A 1 
HETATM 25 O O2 FDA . . . D 3 -3.142 22.884 45.689 1 39.84 ? O2 FDA 710 A 1 
HETATM 26 N N3 FDA . . . D 3 -4.548 21.114 45.686 1 36.71 ? N3 FDA 710 A 1 
HETATM 27 C C4 FDA . . . D 3 -5.346 20.139 45.06 1 38.67 ? C4 FDA 710 A 1 
HETATM 28 O O4 FDA . . . D 3 -5.962 19.311 45.764 1 40.01 ? O4 FDA 710 A 1 
HETATM 29 C C4X FDA . . . D 3 -5.379 20.204 43.658 1 38.57 ? C4X FDA 710 A 1 
HETATM 30 N N5 FDA . . . D 3 -6.157 19.25 42.946 1 38.42 ? N5 FDA 710 A 1 
HETATM 31 C C5X FDA . . . D 3 -6.183 19.338 41.55 1 39.6 ? C5X FDA 710 A 1 
HETATM 32 C C6 FDA . . . D 3 -6.929 18.404 40.836 1 40.54 ? C6 FDA 710 A 1 
HETATM 33 C C7 FDA . . . D 3 -7.001 18.41 39.458 1 41.34 ? C7 FDA 710 A 1 
HETATM 34 C C7M FDA . . . D 3 -7.849 17.334 38.712 1 42.13 ? C7M FDA 710 A 1 
HETATM 35 C C8 FDA . . . D 3 -6.292 19.403 38.712 1 42.01 ? C8 FDA 710 A 1 
HETATM 36 C C8M FDA . . . D 3 -6.303 19.488 37.206 1 43.5 ? C8M FDA 710 A 1 
HETATM 37 C C9 FDA . . . D 3 -5.535 20.358 39.445 1 39.71 ? C9 FDA 710 A 1 
HETATM 38 C C9A FDA . . . D 3 -5.455 20.363 40.811 1 38.84 ? C9A FDA 710 A 1 
HETATM 39 N N10 FDA . . . D 3 -4.675 21.333 41.597 1 38.49 ? N10 FDA 710 A 1 
HETATM 40 C C10 FDA . . . D 3 -4.626 21.251 42.989 1 38.49 ? C10 FDA 710 A 1 
HETATM 41 C C1' FDA . . . D 3 -3.941 22.441 40.893 1 37.16 ? C1' FDA 710 A 1 
HETATM 42 C C2' FDA . . . D 3 -4.711 23.782 41.159 1 36.53 ? C2' FDA 710 A 1 
HETATM 43 O O2' FDA . . . D 3 -6.045 23.631 40.734 1 38.36 ? O2' FDA 710 A 1 
HETATM 44 C C3' FDA . . . D 3 -4.04 25.006 40.465 1 35.35 ? C3' FDA 710 A 1 
HETATM 45 O O3' FDA . . . D 3 -2.702 25.096 40.928 1 37.01 ? O3' FDA 710 A 1 
HETATM 46 C C4' FDA . . . D 3 -4.784 26.302 40.802 1 32.66 ? C4' FDA 710 A 1 
HETATM 47 O O4' FDA . . . D 3 -6.119 26.225 40.361 1 28.8 ? O4' FDA 710 A 1 
HETATM 48 C C5' FDA . . . D 3 -4.181 27.496 40.181 1 31.4 ? C5' FDA 710 A 1 
HETATM 49 O O5' FDA . . . D 3 -4.908 28.614 40.661 1 33.91 ? O5' FDA 710 A 1 
HETATM 50 P P FDA . . . D 3 -4.894 30.041 39.998 1 36.43 ? P FDA 710 A 1 
HETATM 51 O O1P FDA . . . D 3 -3.481 30.408 39.725 1 37.54 ? O1P FDA 710 A 1 
HETATM 52 O O2P FDA . . . D 3 -5.706 30.914 40.857 1 35.35 ? O2P FDA 710 A 1 
HETATM 53 O O3P FDA . . . D 3 -5.582 29.92 38.566 1 36.37 ? O3P FDA 710 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          50 
_model_server_stats.element_count           53 
#