data_3EPZ
#
_model_server_result.job_id            dfIYz0thA4bOm2yO-9JEaw 
_model_server_result.datetime_utc      '2025-04-01 10:22:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3epz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1}' 
#
_entry.id    3EPZ 
#
_exptl.entry_id    3EPZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.31 
_cell.angle_gamma         90 
_cell.entry_id            3EPZ 
_cell.length_a            57.544 
_cell.length_b            59.768 
_cell.length_c            96.286 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3EPZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,H 1 1 
B,G,I 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLN 47 A GLN 379 1_555 A N MSE 48 A MSE 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale2 A C MSE 48 A MSE 380 1_555 A N LEU 49 A LEU 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale3 A C LEU 156 A LEU 488 1_555 A N MSE 157 A MSE 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale4 A C MSE 157 A MSE 489 1_555 A N ASP 158 A ASP 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale5 A C LEU 169 A LEU 501 1_555 A N MSE 170 A MSE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale6 A C MSE 170 A MSE 502 1_555 A N GLN 171 A GLN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale7 A C CYS 248 A CYS 580 1_555 A N MSE 249 A MSE 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale8 A C MSE 249 A MSE 581 1_555 A N ARG 250 A ARG 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale9 B C GLN 47 B GLN 379 1_555 B N MSE 48 B MSE 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale10 B C MSE 48 B MSE 380 1_555 B N LEU 49 B LEU 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale11 B C LEU 156 B LEU 488 1_555 B N MSE 157 B MSE 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale12 B C MSE 157 B MSE 489 1_555 B N ASP 158 B ASP 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale13 B C LEU 169 B LEU 501 1_555 B N MSE 170 B MSE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale14 B C MSE 170 B MSE 502 1_555 B N GLN 171 B GLN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale15 B C CYS 248 B CYS 580 1_555 B N MSE 249 B MSE 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale16 B C MSE 249 B MSE 581 1_555 B N ARG 250 B ARG 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
metalc ? metalc1 F NA NA . A NA 1 1_555 A O GLY 168 A GLY 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? 
metalc ? metalc2 F NA NA . A NA 1 1_555 A O MSE 170 A MSE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? 
metalc ? metalc3 F NA NA . A NA 1 1_555 A O LEU 208 A LEU 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? 
metalc ? metalc4 F NA NA . A NA 1 1_555 A O ASN 209 A ASN 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.081 ? 
metalc ? metalc5 A SG CYS 21 A CYS 353 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? 
metalc ? metalc6 A SG CYS 24 A CYS 356 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? 
metalc ? metalc7 A SG CYS 82 A CYS 414 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
metalc ? metalc8 A ND1 HIS 86 A HIS 418 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
metalc ? metalc9 B SG CYS 21 B CYS 353 1_555 G ZN ZN . B ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
metalc ? metalc10 B SG CYS 24 B CYS 356 1_555 G ZN ZN . B ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? 
metalc ? metalc11 B SG CYS 82 B CYS 414 1_555 G ZN ZN . B ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? 
metalc ? metalc12 B ND1 HIS 86 B HIS 418 1_555 G ZN ZN . B ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3EPZ 
_atom_sites.fract_transf_matrix[1][1]    0.017378 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000701 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016731 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010394 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 701 701 ZN ZN . 
D 3 BGC A 1 702 702 BGC BGC . 
E 4 GOL A 1 703 703 GOL GOL . 
F 5 NA A 1 1 1 NA NA . 
G 2 ZN B 1 701 701 ZN ZN . 
H 6 HOH A 1 2 2 HOH HOH . 
H 6 HOH A 2 3 3 HOH HOH . 
H 6 HOH A 3 4 4 HOH HOH . 
H 6 HOH A 4 6 6 HOH HOH . 
H 6 HOH A 5 9 9 HOH HOH . 
H 6 HOH A 6 10 10 HOH HOH . 
H 6 HOH A 7 11 11 HOH HOH . 
H 6 HOH A 8 12 12 HOH HOH . 
H 6 HOH A 9 13 13 HOH HOH . 
H 6 HOH A 10 15 15 HOH HOH . 
H 6 HOH A 11 20 20 HOH HOH . 
H 6 HOH A 12 24 24 HOH HOH . 
H 6 HOH A 13 26 26 HOH HOH . 
H 6 HOH A 14 28 28 HOH HOH . 
H 6 HOH A 15 30 30 HOH HOH . 
H 6 HOH A 16 31 31 HOH HOH . 
H 6 HOH A 17 33 33 HOH HOH . 
H 6 HOH A 18 35 35 HOH HOH . 
H 6 HOH A 19 37 37 HOH HOH . 
H 6 HOH A 20 39 39 HOH HOH . 
H 6 HOH A 21 44 44 HOH HOH . 
H 6 HOH A 22 46 46 HOH HOH . 
H 6 HOH A 23 49 49 HOH HOH . 
H 6 HOH A 24 50 50 HOH HOH . 
H 6 HOH A 25 54 54 HOH HOH . 
H 6 HOH A 26 56 56 HOH HOH . 
H 6 HOH A 27 57 57 HOH HOH . 
H 6 HOH A 28 59 59 HOH HOH . 
H 6 HOH A 29 64 64 HOH HOH . 
H 6 HOH A 30 65 65 HOH HOH . 
H 6 HOH A 31 66 66 HOH HOH . 
H 6 HOH A 32 68 68 HOH HOH . 
H 6 HOH A 33 70 70 HOH HOH . 
H 6 HOH A 34 71 71 HOH HOH . 
H 6 HOH A 35 76 76 HOH HOH . 
H 6 HOH A 36 77 77 HOH HOH . 
H 6 HOH A 37 78 78 HOH HOH . 
H 6 HOH A 38 80 80 HOH HOH . 
H 6 HOH A 39 81 81 HOH HOH . 
H 6 HOH A 40 82 82 HOH HOH . 
H 6 HOH A 41 84 84 HOH HOH . 
H 6 HOH A 42 85 85 HOH HOH . 
H 6 HOH A 43 86 86 HOH HOH . 
H 6 HOH A 44 87 87 HOH HOH . 
H 6 HOH A 45 88 88 HOH HOH . 
H 6 HOH A 46 89 89 HOH HOH . 
H 6 HOH A 47 90 90 HOH HOH . 
H 6 HOH A 48 91 91 HOH HOH . 
H 6 HOH A 49 92 92 HOH HOH . 
H 6 HOH A 50 93 93 HOH HOH . 
H 6 HOH A 51 94 94 HOH HOH . 
H 6 HOH A 52 95 95 HOH HOH . 
H 6 HOH A 53 96 96 HOH HOH . 
H 6 HOH A 54 97 97 HOH HOH . 
H 6 HOH A 55 98 98 HOH HOH . 
H 6 HOH A 56 99 99 HOH HOH . 
H 6 HOH A 57 100 100 HOH HOH . 
H 6 HOH A 58 103 103 HOH HOH . 
H 6 HOH A 59 104 104 HOH HOH . 
H 6 HOH A 60 105 105 HOH HOH . 
H 6 HOH A 61 601 4 HOH HOH . 
H 6 HOH A 62 602 10 HOH HOH . 
H 6 HOH A 63 603 11 HOH HOH . 
H 6 HOH A 64 604 12 HOH HOH . 
H 6 HOH A 65 605 13 HOH HOH . 
H 6 HOH A 66 606 54 HOH HOH . 
I 6 HOH B 1 7 7 HOH HOH . 
I 6 HOH B 2 17 17 HOH HOH . 
I 6 HOH B 3 18 18 HOH HOH . 
I 6 HOH B 4 19 19 HOH HOH . 
I 6 HOH B 5 21 21 HOH HOH . 
I 6 HOH B 6 23 23 HOH HOH . 
I 6 HOH B 7 25 25 HOH HOH . 
I 6 HOH B 8 27 27 HOH HOH . 
I 6 HOH B 9 29 29 HOH HOH . 
I 6 HOH B 10 36 36 HOH HOH . 
I 6 HOH B 11 38 38 HOH HOH . 
I 6 HOH B 12 45 45 HOH HOH . 
I 6 HOH B 13 55 55 HOH HOH . 
I 6 HOH B 14 60 60 HOH HOH . 
I 6 HOH B 15 67 67 HOH HOH . 
I 6 HOH B 16 69 69 HOH HOH . 
I 6 HOH B 17 72 72 HOH HOH . 
I 6 HOH B 18 74 74 HOH HOH . 
I 6 HOH B 19 83 83 HOH HOH . 
I 6 HOH B 20 92 92 HOH HOH . 
I 6 HOH B 21 101 101 HOH HOH . 
I 6 HOH B 22 106 106 HOH HOH . 
I 6 HOH B 23 127 127 HOH HOH . 
I 6 HOH B 24 166 166 HOH HOH . 
I 6 HOH B 25 601 23 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               46.377 
_atom_site.Cartn_y               -3.25 
_atom_site.Cartn_z               102.243 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        50.98 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           1 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#