data_3EPZ # _model_server_result.job_id LNSLL_FmVKSVBG97ihSkrQ _model_server_result.datetime_utc '2025-04-01 10:13:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3epz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":703}' # _entry.id 3EPZ # _exptl.entry_id 3EPZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.31 _cell.angle_gamma 90 _cell.entry_id 3EPZ _cell.length_a 57.544 _cell.length_b 59.768 _cell.length_c 96.286 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EPZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,H 1 1 B,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLN 47 A GLN 379 1_555 A N MSE 48 A MSE 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C MSE 48 A MSE 380 1_555 A N LEU 49 A LEU 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 A C LEU 156 A LEU 488 1_555 A N MSE 157 A MSE 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale4 A C MSE 157 A MSE 489 1_555 A N ASP 158 A ASP 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 A C LEU 169 A LEU 501 1_555 A N MSE 170 A MSE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C MSE 170 A MSE 502 1_555 A N GLN 171 A GLN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 A C CYS 248 A CYS 580 1_555 A N MSE 249 A MSE 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale8 A C MSE 249 A MSE 581 1_555 A N ARG 250 A ARG 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale9 B C GLN 47 B GLN 379 1_555 B N MSE 48 B MSE 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale10 B C MSE 48 B MSE 380 1_555 B N LEU 49 B LEU 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale11 B C LEU 156 B LEU 488 1_555 B N MSE 157 B MSE 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 B C MSE 157 B MSE 489 1_555 B N ASP 158 B ASP 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale13 B C LEU 169 B LEU 501 1_555 B N MSE 170 B MSE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale14 B C MSE 170 B MSE 502 1_555 B N GLN 171 B GLN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale15 B C CYS 248 B CYS 580 1_555 B N MSE 249 B MSE 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale16 B C MSE 249 B MSE 581 1_555 B N ARG 250 B ARG 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 F NA NA . A NA 1 1_555 A O GLY 168 A GLY 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc2 F NA NA . A NA 1 1_555 A O MSE 170 A MSE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? metalc ? metalc3 F NA NA . A NA 1 1_555 A O LEU 208 A LEU 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc4 F NA NA . A NA 1 1_555 A O ASN 209 A ASN 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.081 ? metalc ? metalc5 A SG CYS 21 A CYS 353 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc6 A SG CYS 24 A CYS 356 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc7 A SG CYS 82 A CYS 414 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc8 A ND1 HIS 86 A HIS 418 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc9 B SG CYS 21 B CYS 353 1_555 G ZN ZN . B ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc10 B SG CYS 24 B CYS 356 1_555 G ZN ZN . B ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc11 B SG CYS 82 B CYS 414 1_555 G ZN ZN . B ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc12 B ND1 HIS 86 B HIS 418 1_555 G ZN ZN . B ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 153 n n C1 C2 GOL sing 154 n n C1 H11 GOL sing 155 n n C1 H12 GOL sing 156 n n O1 HO1 GOL sing 157 n n C2 O2 GOL sing 158 n n C2 C3 GOL sing 159 n n C2 H2 GOL sing 160 n n O2 HO2 GOL sing 161 n n C3 O3 GOL sing 162 n n C3 H31 GOL sing 163 n n C3 H32 GOL sing 164 n n O3 HO3 GOL sing 165 n n # _atom_sites.entry_id 3EPZ _atom_sites.fract_transf_matrix[1][1] 0.017378 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000701 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016731 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010394 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 701 701 ZN ZN . D 3 BGC A 1 702 702 BGC BGC . E 4 GOL A 1 703 703 GOL GOL . F 5 NA A 1 1 1 NA NA . G 2 ZN B 1 701 701 ZN ZN . H 6 HOH A 1 2 2 HOH HOH . H 6 HOH A 2 3 3 HOH HOH . H 6 HOH A 3 4 4 HOH HOH . H 6 HOH A 4 6 6 HOH HOH . H 6 HOH A 5 9 9 HOH HOH . H 6 HOH A 6 10 10 HOH HOH . H 6 HOH A 7 11 11 HOH HOH . H 6 HOH A 8 12 12 HOH HOH . H 6 HOH A 9 13 13 HOH HOH . H 6 HOH A 10 15 15 HOH HOH . H 6 HOH A 11 20 20 HOH HOH . H 6 HOH A 12 24 24 HOH HOH . H 6 HOH A 13 26 26 HOH HOH . H 6 HOH A 14 28 28 HOH HOH . H 6 HOH A 15 30 30 HOH HOH . H 6 HOH A 16 31 31 HOH HOH . H 6 HOH A 17 33 33 HOH HOH . H 6 HOH A 18 35 35 HOH HOH . H 6 HOH A 19 37 37 HOH HOH . H 6 HOH A 20 39 39 HOH HOH . H 6 HOH A 21 44 44 HOH HOH . H 6 HOH A 22 46 46 HOH HOH . H 6 HOH A 23 49 49 HOH HOH . H 6 HOH A 24 50 50 HOH HOH . H 6 HOH A 25 54 54 HOH HOH . H 6 HOH A 26 56 56 HOH HOH . H 6 HOH A 27 57 57 HOH HOH . H 6 HOH A 28 59 59 HOH HOH . H 6 HOH A 29 64 64 HOH HOH . H 6 HOH A 30 65 65 HOH HOH . H 6 HOH A 31 66 66 HOH HOH . H 6 HOH A 32 68 68 HOH HOH . H 6 HOH A 33 70 70 HOH HOH . H 6 HOH A 34 71 71 HOH HOH . H 6 HOH A 35 76 76 HOH HOH . H 6 HOH A 36 77 77 HOH HOH . H 6 HOH A 37 78 78 HOH HOH . H 6 HOH A 38 80 80 HOH HOH . H 6 HOH A 39 81 81 HOH HOH . H 6 HOH A 40 82 82 HOH HOH . H 6 HOH A 41 84 84 HOH HOH . H 6 HOH A 42 85 85 HOH HOH . H 6 HOH A 43 86 86 HOH HOH . H 6 HOH A 44 87 87 HOH HOH . H 6 HOH A 45 88 88 HOH HOH . H 6 HOH A 46 89 89 HOH HOH . H 6 HOH A 47 90 90 HOH HOH . H 6 HOH A 48 91 91 HOH HOH . H 6 HOH A 49 92 92 HOH HOH . H 6 HOH A 50 93 93 HOH HOH . H 6 HOH A 51 94 94 HOH HOH . H 6 HOH A 52 95 95 HOH HOH . H 6 HOH A 53 96 96 HOH HOH . H 6 HOH A 54 97 97 HOH HOH . H 6 HOH A 55 98 98 HOH HOH . H 6 HOH A 56 99 99 HOH HOH . H 6 HOH A 57 100 100 HOH HOH . H 6 HOH A 58 103 103 HOH HOH . H 6 HOH A 59 104 104 HOH HOH . H 6 HOH A 60 105 105 HOH HOH . H 6 HOH A 61 601 4 HOH HOH . H 6 HOH A 62 602 10 HOH HOH . H 6 HOH A 63 603 11 HOH HOH . H 6 HOH A 64 604 12 HOH HOH . H 6 HOH A 65 605 13 HOH HOH . H 6 HOH A 66 606 54 HOH HOH . I 6 HOH B 1 7 7 HOH HOH . I 6 HOH B 2 17 17 HOH HOH . I 6 HOH B 3 18 18 HOH HOH . I 6 HOH B 4 19 19 HOH HOH . I 6 HOH B 5 21 21 HOH HOH . I 6 HOH B 6 23 23 HOH HOH . I 6 HOH B 7 25 25 HOH HOH . I 6 HOH B 8 27 27 HOH HOH . I 6 HOH B 9 29 29 HOH HOH . I 6 HOH B 10 36 36 HOH HOH . I 6 HOH B 11 38 38 HOH HOH . I 6 HOH B 12 45 45 HOH HOH . I 6 HOH B 13 55 55 HOH HOH . I 6 HOH B 14 60 60 HOH HOH . I 6 HOH B 15 67 67 HOH HOH . I 6 HOH B 16 69 69 HOH HOH . I 6 HOH B 17 72 72 HOH HOH . I 6 HOH B 18 74 74 HOH HOH . I 6 HOH B 19 83 83 HOH HOH . I 6 HOH B 20 92 92 HOH HOH . I 6 HOH B 21 101 101 HOH HOH . I 6 HOH B 22 106 106 HOH HOH . I 6 HOH B 23 127 127 HOH HOH . I 6 HOH B 24 166 166 HOH HOH . I 6 HOH B 25 601 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 22.584 -20.005 89.4 1 73.32 ? C1 GOL 703 A 1 HETATM 2 O O1 GOL . . . E 4 22.158 -18.668 89.567 1 73.39 ? O1 GOL 703 A 1 HETATM 3 C C2 GOL . . . E 4 23.936 -20.191 90.076 1 72.9 ? C2 GOL 703 A 1 HETATM 4 O O2 GOL . . . E 4 24.2 -21.555 90.376 1 71.61 ? O2 GOL 703 A 1 HETATM 5 C C3 GOL . . . E 4 25.014 -19.479 89.252 1 72.22 ? C3 GOL 703 A 1 HETATM 6 O O3 GOL . . . E 4 25.894 -20.363 88.6 1 72.97 ? O3 GOL 703 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #