data_3EQ1
#
_model_server_result.job_id            v4edh2VoNa2oIJsk9uWlpg 
_model_server_result.datetime_utc      '2024-12-03 08:11:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3eq1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":400}' 
#
_entry.id    3EQ1 
#
_exptl.entry_id    3EQ1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              420.413 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '3-[5-{[3-(2-carboxyethyl)-4-(carboxymethyl)-5-methyl-1H-pyrrol-2-yl]methyl}-4-(carboxymethyl)-1H-pyrrol-3-yl]propanoic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3EQ1 
_cell.length_a            81.083 
_cell.length_b            104.435 
_cell.length_c            109.732 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3EQ1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F 1 1 
B,G,H,I,J,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 G N N 
#
_chem_comp.formula           'C20 H24 N2 O8' 
_chem_comp.formula_weight    420.413 
_chem_comp.id                DPM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '3-[5-{[3-(2-carboxyethyl)-4-(carboxymethyl)-5-methyl-1H-pyrrol-2-yl]methyl}-4-(carboxymethyl)-1H-pyrrol-3-yl]propanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'DIPYRROMETHANE COFACTOR' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1A C2A DPM doub 83 n y 
C1A CHA DPM sing 84 n n 
C1A NA DPM sing 85 n y 
C2A C3A DPM sing 86 n y 
C2A C5A DPM sing 87 n n 
C3A C4A DPM doub 88 n y 
C3A C7A DPM sing 89 n n 
C4A NA DPM sing 90 n y 
C4A CHB DPM sing 91 n n 
C5A C6A DPM sing 92 n n 
C6A O1A DPM doub 93 n n 
C6A O2A DPM sing 94 n n 
C7A C8A DPM sing 95 n n 
C8A C9A DPM sing 96 n n 
C9A O3A DPM doub 97 n n 
C9A O4A DPM sing 98 n n 
C1B C2B DPM doub 99 n y 
C1B CHB DPM sing 100 n n 
C1B NB DPM sing 101 n y 
C2B C3B DPM sing 102 n y 
C2B C5B DPM sing 103 n n 
C3B C4B DPM doub 104 n y 
C3B C7B DPM sing 105 n n 
C4B NB DPM sing 106 n y 
C5B C6B DPM sing 107 n n 
C6B O1B DPM doub 108 n n 
C6B O2B DPM sing 109 n n 
C7B C8B DPM sing 110 n n 
C8B C9B DPM sing 111 n n 
C9B O3B DPM doub 112 n n 
C9B O4B DPM sing 113 n n 
C5A H5A1 DPM sing 114 n n 
C5A H5A2 DPM sing 115 n n 
C7A H7A1 DPM sing 116 n n 
C7A H7A2 DPM sing 117 n n 
C8A H8A1 DPM sing 118 n n 
C8A H8A2 DPM sing 119 n n 
CHA HCA1 DPM sing 120 n n 
CHA HCA2 DPM sing 121 n n 
CHA HCA3 DPM sing 122 n n 
NA H10 DPM sing 123 n n 
O2A HOA2 DPM sing 124 n n 
O4A HOA4 DPM sing 125 n n 
C4B H4B1 DPM sing 126 n n 
C5B H5B1 DPM sing 127 n n 
C5B H5B2 DPM sing 128 n n 
C7B H7B1 DPM sing 129 n n 
C7B H7B2 DPM sing 130 n n 
C8B H8B1 DPM sing 131 n n 
C8B H8B2 DPM sing 132 n n 
CHB HCB1 DPM sing 133 n n 
CHB HCB2 DPM sing 134 n n 
NB H22 DPM sing 135 n n 
O2B HOB2 DPM sing 136 n n 
O4B HOB4 DPM sing 137 n n 
#
_atom_sites.entry_id                     3EQ1 
_atom_sites.fract_transf_matrix[1][1]    0.012333 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009575 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009113 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 DPM A 1 400 400 DPM DPM . 
D 3 SO4 A 1 362 1 SO4 SO4 . 
E 3 SO4 A 1 363 2 SO4 SO4 . 
F 3 SO4 A 1 364 3 SO4 SO4 . 
G 2 DPM B 1 401 401 DPM DPM . 
H 3 SO4 B 1 362 100 SO4 SO4 . 
I 3 SO4 B 1 363 101 SO4 SO4 . 
J 3 SO4 B 1 364 102 SO4 SO4 . 
K 3 SO4 B 1 365 104 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1A DPM . . . C 2 32.271 12.128 14.268 1 65.45 ? C1A DPM 400 A 1 
HETATM 2 C C2A DPM . . . C 2 33.066 12.236 15.398 1 65.45 ? C2A DPM 400 A 1 
HETATM 3 C C3A DPM . . . C 2 32.267 11.824 16.452 1 65.45 ? C3A DPM 400 A 1 
HETATM 4 C C4A DPM . . . C 2 31.019 11.5 15.918 1 65.45 ? C4A DPM 400 A 1 
HETATM 5 C C5A DPM . . . C 2 34.531 12.689 15.466 1 65.45 ? C5A DPM 400 A 1 
HETATM 6 C C6A DPM . . . C 2 34.64 14.191 15.697 1 65.45 ? C6A DPM 400 A 1 
HETATM 7 C C7A DPM . . . C 2 32.68 11.781 17.925 1 65.45 ? C7A DPM 400 A 1 
HETATM 8 C C8A DPM . . . C 2 32.941 10.385 18.479 1 65.45 ? C8A DPM 400 A 1 
HETATM 9 C C9A DPM . . . C 2 33.323 10.531 19.953 1 65.45 ? C9A DPM 400 A 1 
HETATM 10 C CHA DPM . . . C 2 32.726 12.472 12.847 1 65.45 ? CHA DPM 400 A 1 
HETATM 11 N NA DPM . . . C 2 31.058 11.691 14.597 1 65.45 ? NA DPM 400 A 1 
HETATM 12 O O1A DPM . . . C 2 33.582 14.808 15.95 1 65.45 ? O1A DPM 400 A 1 
HETATM 13 O O2A DPM . . . C 2 35.783 14.684 15.611 1 65.45 ? O2A DPM 400 A 1 
HETATM 14 O O3A DPM . . . C 2 32.432 10.925 20.731 1 65.45 ? O3A DPM 400 A 1 
HETATM 15 O O4A DPM . . . C 2 34.502 10.282 20.27 1 65.45 ? O4A DPM 400 A 1 
HETATM 16 C C1B DPM . . . C 2 28.67 12.015 16.545 1 65.45 ? C1B DPM 400 A 1 
HETATM 17 C C2B DPM . . . C 2 28.115 12.777 17.561 1 65.45 ? C2B DPM 400 A 1 
HETATM 18 C C3B DPM . . . C 2 27.133 13.558 16.959 1 65.45 ? C3B DPM 400 A 1 
HETATM 19 C C4B DPM . . . C 2 27.128 13.267 15.66 1 65.45 ? C4B DPM 400 A 1 
HETATM 20 C C5B DPM . . . C 2 28.505 12.731 19.046 1 65.45 ? C5B DPM 400 A 1 
HETATM 21 C C6B DPM . . . C 2 29.387 13.916 19.441 1 65.45 ? C6B DPM 400 A 1 
HETATM 22 C C7B DPM . . . C 2 26.226 14.575 17.655 1 65.45 ? C7B DPM 400 A 1 
HETATM 23 C C8B DPM . . . C 2 26.441 15.998 17.117 1 65.45 ? C8B DPM 400 A 1 
HETATM 24 C C9B DPM . . . C 2 26.123 16.127 15.621 1 65.45 ? C9B DPM 400 A 1 
HETATM 25 C CHB DPM . . . C 2 29.796 10.997 16.698 1 65.45 ? CHB DPM 400 A 1 
HETATM 26 N NB DPM . . . C 2 28.052 12.338 15.41 1 65.45 ? NB DPM 400 A 1 
HETATM 27 O O1B DPM . . . C 2 29.471 14.172 20.663 1 65.45 ? O1B DPM 400 A 1 
HETATM 28 O O2B DPM . . . C 2 29.962 14.53 18.522 1 65.45 ? O2B DPM 400 A 1 
HETATM 29 O O3B DPM . . . C 2 26.808 16.933 14.958 1 65.45 ? O3B DPM 400 A 1 
HETATM 30 O O4B DPM . . . C 2 25.182 15.44 15.176 1 65.45 ? O4B DPM 400 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           30 
#