data_3EQB # _model_server_result.job_id PR75-oWeLViOveVrqhrHww _model_server_result.datetime_utc '2024-11-26 11:02:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3eqb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1}' # _entry.id 3EQB # _exptl.entry_id 3EQB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 475.207 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(5-{3,4-difluoro-2-[(2-fluoro-4-iodophenyl)amino]phenyl}-1,3,4-oxadiazol-2-yl)ethane-1,2-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3EQB _cell.length_a 82.128 _cell.length_b 82.128 _cell.length_c 129.099 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EQB _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 82.128 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 135 A ASN 195 1_555 C MG MG . A MG 9002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc2 A OD2 ASP 148 A ASP 208 1_555 C MG MG . A MG 9002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc3 B O2B ATP . A ATP 9001 1_555 C MG MG . A MG 9002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? metalc ? metalc4 B O1A ATP . A ATP 9001 1_555 C MG MG . A MG 9002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.885 ? # _chem_comp.formula 'C16 H13 F3 I N5 O' _chem_comp.formula_weight 475.207 _chem_comp.id LUG _chem_comp.mon_nstd_flag . _chem_comp.name N-(5-{3,4-difluoro-2-[(2-fluoro-4-iodophenyl)amino]phenyl}-1,3,4-oxadiazol-2-yl)ethane-1,2-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F2 C11 LUG sing 243 n n C11 C12 LUG doub 244 n y C11 C10 LUG sing 245 n y C12 F1 LUG sing 246 n n C12 C7 LUG sing 247 n y C10 C9 LUG doub 248 n y C9 C8 LUG sing 249 n y C8 C13 LUG sing 250 n y C8 C7 LUG doub 251 n y C13 N2 LUG doub 252 n y C13 O1 LUG sing 253 n y N2 N3 LUG sing 254 n y N3 C14 LUG doub 255 n y C14 N4 LUG sing 256 n n C14 O1 LUG sing 257 n y N4 C15 LUG sing 258 n n C15 C16 LUG sing 259 n n C16 N5 LUG sing 260 n n C7 N1 LUG sing 261 n n N1 C3 LUG sing 262 n n C3 C4 LUG doub 263 n y C3 C2 LUG sing 264 n y C4 C5 LUG sing 265 n y C5 C6 LUG doub 266 n y C6 I1 LUG sing 267 n n C6 C1 LUG sing 268 n y C1 C2 LUG doub 269 n y C2 F3 LUG sing 270 n n C10 H10 LUG sing 271 n n C9 H9 LUG sing 272 n n N4 HN4 LUG sing 273 n n C15 H15 LUG sing 274 n n C15 H15A LUG sing 275 n n C16 H16 LUG sing 276 n n C16 H16A LUG sing 277 n n N5 HN5 LUG sing 278 n n N5 HN5A LUG sing 279 n n N1 HN1 LUG sing 280 n n C4 H4 LUG sing 281 n n C5 H5 LUG sing 282 n n C1 H1 LUG sing 283 n n # _atom_sites.entry_id 3EQB _atom_sites.fract_transf_matrix[1][1] 0.012176 _atom_sites.fract_transf_matrix[1][2] 0.00703 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01406 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007746 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 9001 9001 ATP ATP . C 3 MG A 1 9002 9002 MG MG . D 4 LUG A 1 1 1 LUG LUG . E 5 HOH A 1 9003 9003 HOH HOH . E 5 HOH A 2 9004 9004 HOH HOH . E 5 HOH A 3 9006 9006 HOH HOH . E 5 HOH A 4 9007 9007 HOH HOH . E 5 HOH A 5 9008 9008 HOH HOH . E 5 HOH A 6 9010 9010 HOH HOH . E 5 HOH A 7 9011 9011 HOH HOH . E 5 HOH A 8 9012 9012 HOH HOH . E 5 HOH A 9 9014 9014 HOH HOH . E 5 HOH A 10 9018 9018 HOH HOH . E 5 HOH A 11 9019 9019 HOH HOH . E 5 HOH A 12 9020 9020 HOH HOH . E 5 HOH A 13 9024 9024 HOH HOH . E 5 HOH A 14 9030 9030 HOH HOH . E 5 HOH A 15 9033 9033 HOH HOH . E 5 HOH A 16 9037 9037 HOH HOH . E 5 HOH A 17 9038 9038 HOH HOH . E 5 HOH A 18 9039 9039 HOH HOH . E 5 HOH A 19 9040 9040 HOH HOH . E 5 HOH A 20 9041 9041 HOH HOH . E 5 HOH A 21 9042 9042 HOH HOH . E 5 HOH A 22 9043 9043 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F F2 LUG . . . D 4 35.904 -15.718 3.695 1 61.53 ? F2 LUG 1 A 1 HETATM 2 C C11 LUG . . . D 4 37.002 -14.995 4.015 1 60.7 ? C11 LUG 1 A 1 HETATM 3 C C12 LUG . . . D 4 37.87 -15.255 5.116 1 59.9 ? C12 LUG 1 A 1 HETATM 4 F F1 LUG . . . D 4 37.701 -16.27 5.98 1 59.26 ? F1 LUG 1 A 1 HETATM 5 C C10 LUG . . . D 4 37.228 -13.938 3.153 1 60.44 ? C10 LUG 1 A 1 HETATM 6 C C9 LUG . . . D 4 38.32 -13.137 3.406 1 60.92 ? C9 LUG 1 A 1 HETATM 7 C C8 LUG . . . D 4 39.164 -13.424 4.468 1 61.45 ? C8 LUG 1 A 1 HETATM 8 C C13 LUG . . . D 4 40.275 -12.509 4.705 1 63.89 ? C13 LUG 1 A 1 HETATM 9 N N2 LUG . . . D 4 40.908 -12.396 5.892 1 65.22 ? N2 LUG 1 A 1 HETATM 10 N N3 LUG . . . D 4 41.862 -11.392 5.759 1 68.42 ? N3 LUG 1 A 1 HETATM 11 C C14 LUG . . . D 4 41.708 -10.952 4.494 1 69.26 ? C14 LUG 1 A 1 HETATM 12 N N4 LUG . . . D 4 42.509 -9.856 3.933 1 71.3 ? N4 LUG 1 A 1 HETATM 13 C C15 LUG . . . D 4 42.305 -8.626 4.726 1 70.83 ? C15 LUG 1 A 1 HETATM 14 C C16 LUG . . . D 4 41.773 -7.555 3.797 1 73.03 ? C16 LUG 1 A 1 HETATM 15 N N5 LUG . . . D 4 42.373 -6.25 4.205 1 75.67 ? N5 LUG 1 A 1 HETATM 16 O O1 LUG . . . D 4 40.736 -11.599 3.801 1 66.07 ? O1 LUG 1 A 1 HETATM 17 C C7 LUG . . . D 4 38.982 -14.464 5.344 1 59.91 ? C7 LUG 1 A 1 HETATM 18 N N1 LUG . . . D 4 39.918 -14.599 6.429 1 58.4 ? N1 LUG 1 A 1 HETATM 19 C C3 LUG . . . D 4 40.629 -15.804 6.703 1 58.51 ? C3 LUG 1 A 1 HETATM 20 C C4 LUG . . . D 4 40.364 -16.996 6.042 1 58.34 ? C4 LUG 1 A 1 HETATM 21 C C5 LUG . . . D 4 41.084 -18.149 6.364 1 57.36 ? C5 LUG 1 A 1 HETATM 22 C C6 LUG . . . D 4 42.076 -18.154 7.356 1 58.16 ? C6 LUG 1 A 1 HETATM 23 I I1 LUG . . . D 4 43.154 -19.914 7.832 1 58.06 ? I1 LUG 1 A 1 HETATM 24 C C1 LUG . . . D 4 42.343 -16.968 8.019 1 57.01 ? C1 LUG 1 A 1 HETATM 25 C C2 LUG . . . D 4 41.623 -15.812 7.699 1 59.14 ? C2 LUG 1 A 1 HETATM 26 F F3 LUG . . . D 4 41.921 -14.685 8.386 1 59.13 ? F3 LUG 1 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #