data_3EQB # _model_server_result.job_id zfmkAL9IH5gYrTkBYxt0Pw _model_server_result.datetime_utc '2024-11-22 22:14:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3eqb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":9001}' # _entry.id 3EQB # _exptl.entry_id 3EQB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3EQB _cell.length_a 82.128 _cell.length_b 82.128 _cell.length_c 129.099 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EQB _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 82.128 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 135 A ASN 195 1_555 C MG MG . A MG 9002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc2 A OD2 ASP 148 A ASP 208 1_555 C MG MG . A MG 9002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc3 B O2B ATP . A ATP 9001 1_555 C MG MG . A MG 9002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? metalc ? metalc4 B O1A ATP . A ATP 9001 1_555 C MG MG . A MG 9002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.885 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 3EQB _atom_sites.fract_transf_matrix[1][1] 0.012176 _atom_sites.fract_transf_matrix[1][2] 0.00703 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01406 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007746 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 9001 9001 ATP ATP . C 3 MG A 1 9002 9002 MG MG . D 4 LUG A 1 1 1 LUG LUG . E 5 HOH A 1 9003 9003 HOH HOH . E 5 HOH A 2 9004 9004 HOH HOH . E 5 HOH A 3 9006 9006 HOH HOH . E 5 HOH A 4 9007 9007 HOH HOH . E 5 HOH A 5 9008 9008 HOH HOH . E 5 HOH A 6 9010 9010 HOH HOH . E 5 HOH A 7 9011 9011 HOH HOH . E 5 HOH A 8 9012 9012 HOH HOH . E 5 HOH A 9 9014 9014 HOH HOH . E 5 HOH A 10 9018 9018 HOH HOH . E 5 HOH A 11 9019 9019 HOH HOH . E 5 HOH A 12 9020 9020 HOH HOH . E 5 HOH A 13 9024 9024 HOH HOH . E 5 HOH A 14 9030 9030 HOH HOH . E 5 HOH A 15 9033 9033 HOH HOH . E 5 HOH A 16 9037 9037 HOH HOH . E 5 HOH A 17 9038 9038 HOH HOH . E 5 HOH A 18 9039 9039 HOH HOH . E 5 HOH A 19 9040 9040 HOH HOH . E 5 HOH A 20 9041 9041 HOH HOH . E 5 HOH A 21 9042 9042 HOH HOH . E 5 HOH A 22 9043 9043 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 45.847 -6.793 2.006 1 58.26 ? PG ATP 9001 A 1 HETATM 2 O O1G ATP . . . B 2 44.966 -6.7 3.226 1 60.79 ? O1G ATP 9001 A 1 HETATM 3 O O2G ATP . . . B 2 45.488 -7.99 1.167 1 57.82 ? O2G ATP 9001 A 1 HETATM 4 O O3G ATP . . . B 2 46.077 -5.513 1.251 1 59.72 ? O3G ATP 9001 A 1 HETATM 5 P PB ATP . . . B 2 47.607 -8.146 3.745 1 52.07 ? PB ATP 9001 A 1 HETATM 6 O O1B ATP . . . B 2 49.069 -7.999 3.991 1 52.7 ? O1B ATP 9001 A 1 HETATM 7 O O2B ATP . . . B 2 46.99 -9.448 3.26 1 54.22 ? O2B ATP 9001 A 1 HETATM 8 O O3B ATP . . . B 2 47.315 -7.031 2.628 1 55.72 ? O3B ATP 9001 A 1 HETATM 9 P PA ATP . . . B 2 46.188 -8.615 6.219 1 49.98 ? PA ATP 9001 A 1 HETATM 10 O O1A ATP . . . B 2 45.577 -9.842 5.586 1 50.96 ? O1A ATP 9001 A 1 HETATM 11 O O2A ATP . . . B 2 45.301 -7.751 7.072 1 52.88 ? O2A ATP 9001 A 1 HETATM 12 O O3A ATP . . . B 2 46.8 -7.66 5.059 1 51.84 ? O3A ATP 9001 A 1 HETATM 13 O O5' ATP . . . B 2 47.471 -9.013 7.1 1 51.66 ? O5' ATP 9001 A 1 HETATM 14 C C5' ATP . . . B 2 48.406 -8.03 7.526 1 53.27 ? C5' ATP 9001 A 1 HETATM 15 C C4' ATP . . . B 2 49.738 -8.692 7.883 1 55.72 ? C4' ATP 9001 A 1 HETATM 16 O O4' ATP . . . B 2 49.645 -9.462 9.083 1 56.24 ? O4' ATP 9001 A 1 HETATM 17 C C3' ATP . . . B 2 50.216 -9.682 6.839 1 56.11 ? C3' ATP 9001 A 1 HETATM 18 O O3' ATP . . . B 2 51.029 -9.024 5.865 1 57.63 ? O3' ATP 9001 A 1 HETATM 19 C C2' ATP . . . B 2 51.061 -10.654 7.625 1 55.33 ? C2' ATP 9001 A 1 HETATM 20 O O2' ATP . . . B 2 52.387 -10.155 7.664 1 57.81 ? O2' ATP 9001 A 1 HETATM 21 C C1' ATP . . . B 2 50.559 -10.558 9.036 1 54.59 ? C1' ATP 9001 A 1 HETATM 22 N N9 ATP . . . B 2 49.83 -11.794 9.364 1 53.4 ? N9 ATP 9001 A 1 HETATM 23 C C8 ATP . . . B 2 48.567 -12.059 9.024 1 51.88 ? C8 ATP 9001 A 1 HETATM 24 N N7 ATP . . . B 2 48.203 -13.276 9.478 1 52.51 ? N7 ATP 9001 A 1 HETATM 25 C C5 ATP . . . B 2 49.252 -13.812 10.126 1 53.21 ? C5 ATP 9001 A 1 HETATM 26 C C6 ATP . . . B 2 49.546 -15.077 10.851 1 53.49 ? C6 ATP 9001 A 1 HETATM 27 N N6 ATP . . . B 2 48.607 -16.05 10.985 1 52.55 ? N6 ATP 9001 A 1 HETATM 28 N N1 ATP . . . B 2 50.79 -15.219 11.377 1 53.57 ? N1 ATP 9001 A 1 HETATM 29 C C2 ATP . . . B 2 51.744 -14.275 11.262 1 51.71 ? C2 ATP 9001 A 1 HETATM 30 N N3 ATP . . . B 2 51.54 -13.114 10.622 1 52.86 ? N3 ATP 9001 A 1 HETATM 31 C C4 ATP . . . B 2 50.334 -12.826 10.048 1 53.72 ? C4 ATP 9001 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #