data_3EQC
#
_model_server_result.job_id            9wjm7T9RTdCENJ1kaYUULw 
_model_server_result.datetime_utc      '2024-11-07 21:36:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3eqc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":6}' 
#
_entry.id    3EQC 
#
_exptl.entry_id    3EQC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3EQC 
_cell.length_a            77.22 
_cell.length_b            77.22 
_cell.length_c            222.05 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3EQC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS monomeric 1 author_and_software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G 1 1 
A,B,C,D,E,F,G 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 11_555 -x+y,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 111.025 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C O1B AGS . A AGS 2 1_555 D MG MG . A MG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? 
metalc ? metalc2 C O2A AGS . A AGS 2 1_555 D MG MG . A MG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? 
metalc ? metalc3 D MG MG . A MG 3 1_555 A OD1 ASN 162 A ASN 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? 
metalc ? metalc4 D MG MG . A MG 3 1_555 A OD2 ASP 175 A ASP 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? 
metalc ? metalc5 D MG MG . A MG 3 1_555 G O HOH . A HOH 568 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc6 D MG MG . A MG 3 1_555 G O HOH . A HOH 569 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? 
metalc ? metalc7 E CA CA . A CA 5 1_555 A OD1 ASP 32 A ASP 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 4.437 ? 
metalc ? metalc8 E CA CA . A CA 5 1_555 A OD2 ASP 32 A ASP 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? 
metalc ? metalc9 E CA CA . A CA 5 1_555 A OD1 ASP 33 A ASP 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? 
metalc ? metalc10 F NA NA . A NA 6 1_555 A OD1 ASP 32 A ASP 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? 
metalc ? metalc11 F NA NA . A NA 6 1_555 A OD2 ASP 32 A ASP 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3EQC 
_atom_sites.fract_transf_matrix[1][1]    0.01295 
_atom_sites.fract_transf_matrix[1][2]    0.007477 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014953 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004503 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 3BM A 1 1 1 3BM 3BM . 
C 3 AGS A 1 2 2 AGS AGS . 
D 4 MG A 1 3 3 MG MG . 
E 5 CA A 1 5 5 CA CA . 
F 6 NA A 1 6 6 NA NA . 
G 7 HOH A 1 394 394 HOH HOH . 
G 7 HOH A 2 395 395 HOH HOH . 
G 7 HOH A 3 396 396 HOH HOH . 
G 7 HOH A 4 397 397 HOH HOH . 
G 7 HOH A 5 398 398 HOH HOH . 
G 7 HOH A 6 399 399 HOH HOH . 
G 7 HOH A 7 400 400 HOH HOH . 
G 7 HOH A 8 401 401 HOH HOH . 
G 7 HOH A 9 402 402 HOH HOH . 
G 7 HOH A 10 403 403 HOH HOH . 
G 7 HOH A 11 404 404 HOH HOH . 
G 7 HOH A 12 405 405 HOH HOH . 
G 7 HOH A 13 406 406 HOH HOH . 
G 7 HOH A 14 407 407 HOH HOH . 
G 7 HOH A 15 408 408 HOH HOH . 
G 7 HOH A 16 409 409 HOH HOH . 
G 7 HOH A 17 410 410 HOH HOH . 
G 7 HOH A 18 411 411 HOH HOH . 
G 7 HOH A 19 412 412 HOH HOH . 
G 7 HOH A 20 413 413 HOH HOH . 
G 7 HOH A 21 414 414 HOH HOH . 
G 7 HOH A 22 415 415 HOH HOH . 
G 7 HOH A 23 416 416 HOH HOH . 
G 7 HOH A 24 417 417 HOH HOH . 
G 7 HOH A 25 418 418 HOH HOH . 
G 7 HOH A 26 419 419 HOH HOH . 
G 7 HOH A 27 420 420 HOH HOH . 
G 7 HOH A 28 421 421 HOH HOH . 
G 7 HOH A 29 422 422 HOH HOH . 
G 7 HOH A 30 423 423 HOH HOH . 
G 7 HOH A 31 424 424 HOH HOH . 
G 7 HOH A 32 425 425 HOH HOH . 
G 7 HOH A 33 426 426 HOH HOH . 
G 7 HOH A 34 427 427 HOH HOH . 
G 7 HOH A 35 428 428 HOH HOH . 
G 7 HOH A 36 429 429 HOH HOH . 
G 7 HOH A 37 430 430 HOH HOH . 
G 7 HOH A 38 431 431 HOH HOH . 
G 7 HOH A 39 432 432 HOH HOH . 
G 7 HOH A 40 433 433 HOH HOH . 
G 7 HOH A 41 434 434 HOH HOH . 
G 7 HOH A 42 435 435 HOH HOH . 
G 7 HOH A 43 436 436 HOH HOH . 
G 7 HOH A 44 437 437 HOH HOH . 
G 7 HOH A 45 438 438 HOH HOH . 
G 7 HOH A 46 439 439 HOH HOH . 
G 7 HOH A 47 440 440 HOH HOH . 
G 7 HOH A 48 441 441 HOH HOH . 
G 7 HOH A 49 442 442 HOH HOH . 
G 7 HOH A 50 443 443 HOH HOH . 
G 7 HOH A 51 444 444 HOH HOH . 
G 7 HOH A 52 445 445 HOH HOH . 
G 7 HOH A 53 446 446 HOH HOH . 
G 7 HOH A 54 447 447 HOH HOH . 
G 7 HOH A 55 448 448 HOH HOH . 
G 7 HOH A 56 449 449 HOH HOH . 
G 7 HOH A 57 450 450 HOH HOH . 
G 7 HOH A 58 451 451 HOH HOH . 
G 7 HOH A 59 452 452 HOH HOH . 
G 7 HOH A 60 453 453 HOH HOH . 
G 7 HOH A 61 454 454 HOH HOH . 
G 7 HOH A 62 455 455 HOH HOH . 
G 7 HOH A 63 456 456 HOH HOH . 
G 7 HOH A 64 457 457 HOH HOH . 
G 7 HOH A 65 458 458 HOH HOH . 
G 7 HOH A 66 459 459 HOH HOH . 
G 7 HOH A 67 460 460 HOH HOH . 
G 7 HOH A 68 461 461 HOH HOH . 
G 7 HOH A 69 462 462 HOH HOH . 
G 7 HOH A 70 463 463 HOH HOH . 
G 7 HOH A 71 464 464 HOH HOH . 
G 7 HOH A 72 465 465 HOH HOH . 
G 7 HOH A 73 466 466 HOH HOH . 
G 7 HOH A 74 467 467 HOH HOH . 
G 7 HOH A 75 468 468 HOH HOH . 
G 7 HOH A 76 469 469 HOH HOH . 
G 7 HOH A 77 470 470 HOH HOH . 
G 7 HOH A 78 471 471 HOH HOH . 
G 7 HOH A 79 472 472 HOH HOH . 
G 7 HOH A 80 473 473 HOH HOH . 
G 7 HOH A 81 474 474 HOH HOH . 
G 7 HOH A 82 475 475 HOH HOH . 
G 7 HOH A 83 476 476 HOH HOH . 
G 7 HOH A 84 477 477 HOH HOH . 
G 7 HOH A 85 478 478 HOH HOH . 
G 7 HOH A 86 479 479 HOH HOH . 
G 7 HOH A 87 480 480 HOH HOH . 
G 7 HOH A 88 481 481 HOH HOH . 
G 7 HOH A 89 482 482 HOH HOH . 
G 7 HOH A 90 483 483 HOH HOH . 
G 7 HOH A 91 484 484 HOH HOH . 
G 7 HOH A 92 485 485 HOH HOH . 
G 7 HOH A 93 486 486 HOH HOH . 
G 7 HOH A 94 487 487 HOH HOH . 
G 7 HOH A 95 488 488 HOH HOH . 
G 7 HOH A 96 489 489 HOH HOH . 
G 7 HOH A 97 490 490 HOH HOH . 
G 7 HOH A 98 491 491 HOH HOH . 
G 7 HOH A 99 492 492 HOH HOH . 
G 7 HOH A 100 493 493 HOH HOH . 
G 7 HOH A 101 494 494 HOH HOH . 
G 7 HOH A 102 495 495 HOH HOH . 
G 7 HOH A 103 496 496 HOH HOH . 
G 7 HOH A 104 497 497 HOH HOH . 
G 7 HOH A 105 498 498 HOH HOH . 
G 7 HOH A 106 499 499 HOH HOH . 
G 7 HOH A 107 500 500 HOH HOH . 
G 7 HOH A 108 501 501 HOH HOH . 
G 7 HOH A 109 502 502 HOH HOH . 
G 7 HOH A 110 503 503 HOH HOH . 
G 7 HOH A 111 504 504 HOH HOH . 
G 7 HOH A 112 505 505 HOH HOH . 
G 7 HOH A 113 506 506 HOH HOH . 
G 7 HOH A 114 507 507 HOH HOH . 
G 7 HOH A 115 508 508 HOH HOH . 
G 7 HOH A 116 509 509 HOH HOH . 
G 7 HOH A 117 510 510 HOH HOH . 
G 7 HOH A 118 511 511 HOH HOH . 
G 7 HOH A 119 512 512 HOH HOH . 
G 7 HOH A 120 513 513 HOH HOH . 
G 7 HOH A 121 514 514 HOH HOH . 
G 7 HOH A 122 515 515 HOH HOH . 
G 7 HOH A 123 516 516 HOH HOH . 
G 7 HOH A 124 517 517 HOH HOH . 
G 7 HOH A 125 518 518 HOH HOH . 
G 7 HOH A 126 519 519 HOH HOH . 
G 7 HOH A 127 520 520 HOH HOH . 
G 7 HOH A 128 521 521 HOH HOH . 
G 7 HOH A 129 522 522 HOH HOH . 
G 7 HOH A 130 523 523 HOH HOH . 
G 7 HOH A 131 524 524 HOH HOH . 
G 7 HOH A 132 525 525 HOH HOH . 
G 7 HOH A 133 526 526 HOH HOH . 
G 7 HOH A 134 527 527 HOH HOH . 
G 7 HOH A 135 528 528 HOH HOH . 
G 7 HOH A 136 529 529 HOH HOH . 
G 7 HOH A 137 530 530 HOH HOH . 
G 7 HOH A 138 531 531 HOH HOH . 
G 7 HOH A 139 532 532 HOH HOH . 
G 7 HOH A 140 533 533 HOH HOH . 
G 7 HOH A 141 534 534 HOH HOH . 
G 7 HOH A 142 535 535 HOH HOH . 
G 7 HOH A 143 536 536 HOH HOH . 
G 7 HOH A 144 537 537 HOH HOH . 
G 7 HOH A 145 538 538 HOH HOH . 
G 7 HOH A 146 539 539 HOH HOH . 
G 7 HOH A 147 540 540 HOH HOH . 
G 7 HOH A 148 541 541 HOH HOH . 
G 7 HOH A 149 542 542 HOH HOH . 
G 7 HOH A 150 543 543 HOH HOH . 
G 7 HOH A 151 544 544 HOH HOH . 
G 7 HOH A 152 545 545 HOH HOH . 
G 7 HOH A 153 546 546 HOH HOH . 
G 7 HOH A 154 547 547 HOH HOH . 
G 7 HOH A 155 548 548 HOH HOH . 
G 7 HOH A 156 549 549 HOH HOH . 
G 7 HOH A 157 550 550 HOH HOH . 
G 7 HOH A 158 551 551 HOH HOH . 
G 7 HOH A 159 552 552 HOH HOH . 
G 7 HOH A 160 553 553 HOH HOH . 
G 7 HOH A 161 554 554 HOH HOH . 
G 7 HOH A 162 555 555 HOH HOH . 
G 7 HOH A 163 556 556 HOH HOH . 
G 7 HOH A 164 557 557 HOH HOH . 
G 7 HOH A 165 558 558 HOH HOH . 
G 7 HOH A 166 559 559 HOH HOH . 
G 7 HOH A 167 560 560 HOH HOH . 
G 7 HOH A 168 561 561 HOH HOH . 
G 7 HOH A 169 562 562 HOH HOH . 
G 7 HOH A 170 563 563 HOH HOH . 
G 7 HOH A 171 564 564 HOH HOH . 
G 7 HOH A 172 565 565 HOH HOH . 
G 7 HOH A 173 566 566 HOH HOH . 
G 7 HOH A 174 567 567 HOH HOH . 
G 7 HOH A 175 568 568 HOH HOH . 
G 7 HOH A 176 569 569 HOH HOH . 
G 7 HOH A 177 570 570 HOH HOH . 
G 7 HOH A 178 571 571 HOH HOH . 
G 7 HOH A 179 572 572 HOH HOH . 
G 7 HOH A 180 573 573 HOH HOH . 
G 7 HOH A 181 574 574 HOH HOH . 
G 7 HOH A 182 575 575 HOH HOH . 
G 7 HOH A 183 576 576 HOH HOH . 
G 7 HOH A 184 577 393 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       6 
_atom_site.Cartn_x               -2.492 
_atom_site.Cartn_y               65.624 
_atom_site.Cartn_z               52.387 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        37.59 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           6 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#